Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 1.2e-278 962.6 508 100.0
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 8.7e-229 797.0 508 85.8
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 8.4e-216 753.8 507 80.3
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 3.0e-205 718.8 507 75.9
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 6.2e-203 711.1 508 75.0
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 1.1e-202 710.3 511 75.9
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 6.0e-198 694.5 505 71.7
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 1.1e-196 690.3 509 70.7
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 2.8e-195 685.6 500 73.6
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 3.7e-195 685.3 509 70.5
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 7.2e-191 671.0 487 70.8
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 2.2e-168 596.3 509 61.9
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 1.9e-167 593.2 423 74.2
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 8.0e-158 561.2 498 60.4
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 2.6e-156 556.2 507 57.4
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 2.8e-155 552.7 509 57.8
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 8.0e-150 534.6 522 58.0
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 5.2e-149 531.9 511 57.3
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 1.6e-145 520.4 505 56.8
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 2.0e-145 520.0 507 55.6
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 5.2e-141 505.4 531 53.5
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 8.9e-141 504.6 539 52.7
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.0e-140 503.4 502 56.4
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 4.4e-140 502.3 502 55.0
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 9.8e-140 501.1 508 56.3
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.9e-139 499.6 499 55.5
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 1.9e-138 496.9 502 54.8
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 3.2e-138 496.1 502 54.6
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 3.2e-138 496.1 507 54.8
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 7.0e-138 495.0 537 52.0
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 2.0e-137 493.4 504 55.0
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 6.0e-137 491.9 503 52.7
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 1.5e-135 487.3 499 55.3
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.5e-135 487.3 499 55.1
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 2.1e-134 483.4 501 54.5
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 6.2e-134 481.9 499 54.7
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 1.1e-133 481.1 503 53.5
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 1.5e-132 477.2 510 53.3
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 4.4e-132 475.7 502 52.4
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 3.7e-131 472.6 504 51.8
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 6.4e-131 471.9 510 52.0
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 6.4e-131 471.9 507 53.1
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 2.4e-130 469.9 513 52.4
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 2.4e-130 469.9 513 52.4
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 6.6e-128 461.8 508 52.2
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 1.9e-127 460.3 506 49.8
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 3.3e-127 459.5 504 51.6
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 1.2e-126 457.6 501 50.9
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 6.2e-126 455.3 511 52.1
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 1.1e-125 454.5 513 50.5
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 2.3e-125 453.4 514 51.2
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 3.1e-125 453.0 522 48.9
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 2.0e-124 450.3 493 48.7
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 3.4e-124 449.5 510 51.6
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 3.4e-124 449.5 509 50.5
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.2e-123 446.8 527 50.1
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 3.2e-122 443.0 284 88.0
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 2.7e-121 439.9 502 49.6
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 6.0e-121 438.7 447 53.0
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 1.0e-120 438.0 511 49.3
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.0e-120 438.0 505 49.5
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 1.3e-120 437.6 515 47.8
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 1.1e-119 434.5 510 49.2
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 1.5e-119 434.1 509 49.5
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 5.6e-119 432.2 509 48.1
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 5.6e-119 432.2 578 45.0
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 7.3e-119 431.8 519 50.3
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 2.1e-118 430.3 515 47.6
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 6.2e-118 428.7 508 48.0
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 4.0e-117 426.0 509 49.3
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 2.6e-116 423.3 503 46.7
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 9.9e-116 421.4 444 50.0
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 1.3e-115 421.0 498 45.2
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 2.9e-115 419.9 508 48.4
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 3.8e-115 419.5 509 46.6
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 8.4e-115 418.3 505 46.5
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 1.1e-114 417.9 511 45.6
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 4.2e-114 416.0 514 48.8
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 2.7e-113 413.3 515 44.9
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 4.6e-113 412.5 511 46.6
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 1.1e-111 407.9 515 48.3
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 8.1e-110 401.7 525 46.5
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 1.8e-101 374.0 482 48.5
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 2.6e-100 370.2 500 46.0
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 3.2e-98 363.2 430 48.1
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 8.1e-94 348.6 497 41.9
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 2.0e-92 344.0 375 50.4
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 5.8e-92 342.4 510 42.7
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 2.5e-90 337.0 433 43.0
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 7.9e-89 332.0 503 41.6
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 2.5e-87 327.0 260 65.8
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 4.3e-87 326.2 411 46.0
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.8e-86 323.6 377 51.2
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 1.2e-81 308.1 482 39.4
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 3.0e-80 303.5 506 41.3
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 2.0e-68 264.2 174 70.1
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 1.0e-67 261.9 207 63.8
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 6.1e-65 252.7 416 39.2
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 8.8e-64 248.8 527 34.7
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 6.3e-62 242.7 541 32.0
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 3.8e-59 233.4 174 64.4
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.9e-58 231.1 323 44.6
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 1.6e-57 228.0 302 41.1
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 5.2e-56 223.0 218 56.0
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 5.3e-53 213.0 283 43.8
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 1.5e-50 204.9 516 30.6
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 2.5e-50 204.1 123 79.7
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 2.8e-46 190.7 530 29.1
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 4.1e-45 186.8 109 85.3
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 5.5e-42 176.4 123 70.7
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 7.5e-39 166.0 118 68.6
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 1.3e-35 155.2 179 44.1
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 4.1e-29 133.7 70 90.0
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 7.8e-28 129.4 136 54.4
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 1.3e-27 128.6 70 87.1
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 1.6e-17 95.1 108 51.9
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 8.1e-17 92.8 170 38.8
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 7.5e-15 86.3 48 83.3
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 4.6e-12 77.0 54 68.5
Medtr6g471100 Medicago truncatula HOM05D000162 ORTHO05D000090 3.9e-11 73.9 103 46.6
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 1.4e-08 65.5 48 62.5
MCO09G287 Micromonas commoda HOM05D006388 ORTHO05D008026 1.3e-06 58.9 220 24.5
Zm00001eb135490 Zea mays HOM05D006388 ORTHO05D008026 8.4e-06 56.2 49 57.1


User provided reference genes

Program Settings