Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 8.8e-107 390.6 240 100.0
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 3.5e-79 298.9 258 68.2
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.1e-67 260.8 256 60.5
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 4.9e-65 251.9 256 60.2
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 1.1e-64 250.8 256 59.4
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.9e-64 250.0 254 58.7
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.9e-64 250.0 255 58.4
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 7.1e-64 248.1 241 62.7
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 9.2e-64 247.7 254 57.5
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 6.6e-62 241.5 255 58.0
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 6.2e-60 235.0 255 56.9
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 3.4e-58 229.2 244 57.8
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 4.4e-58 228.8 243 55.6
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 9.9e-58 227.6 257 55.6
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 1.3e-57 227.3 257 56.0
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 1.1e-56 224.2 254 54.7
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.2e-55 220.7 255 53.7
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.1e-55 219.9 252 54.8
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 3.5e-55 219.2 250 55.2
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 6.0e-55 218.4 242 56.2
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 7.8e-55 218.0 257 53.3
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.7e-54 216.9 248 51.2
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 2.3e-54 216.5 257 52.9
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 3.0e-54 216.1 260 51.9
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 3.0e-54 216.1 247 53.4
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.9e-53 213.4 257 52.5
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 9.6e-53 211.1 257 51.4
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 9.6e-53 211.1 257 52.1
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 1.3e-52 210.7 257 52.1
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 4.8e-52 208.8 256 51.2
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 6.2e-52 208.4 250 52.8
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 1.4e-51 207.2 257 52.1
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.4e-51 207.2 282 46.1
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.4e-51 207.2 257 53.3
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 3.1e-51 206.1 257 51.4
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 5.3e-51 205.3 252 51.6
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 5.3e-51 205.3 252 51.2
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 6.9e-51 204.9 257 52.1
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 6.9e-51 204.9 257 50.6
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 1.2e-50 204.1 249 50.6
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 1.2e-50 204.1 257 50.6
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 2.0e-50 203.4 249 51.8
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.0e-50 203.4 249 48.6
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 3.4e-50 202.6 251 50.2
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.5e-50 202.2 249 48.6
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.5e-50 202.2 249 48.6
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 7.6e-50 201.4 254 50.0
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 9.9e-50 201.1 254 52.0
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 1.3e-49 200.7 255 52.5
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 1.3e-49 200.7 256 56.2
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 2.2e-49 199.9 254 51.6
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 2.9e-49 199.5 254 50.0
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 3.8e-49 199.1 248 48.0
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 6.4e-49 198.4 240 51.7
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 6.4e-49 198.4 255 50.6
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 8.4e-49 198.0 250 51.6
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 1.1e-48 197.6 223 55.6
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 1.4e-48 197.2 257 49.8
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.2e-47 194.1 252 50.0
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 1.2e-47 194.1 245 50.2
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 1.6e-47 193.7 243 47.7
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.6e-47 193.7 257 48.2
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.6e-47 193.7 251 48.6
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 2.1e-47 193.4 241 51.0
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 2.7e-47 193.0 248 49.2
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 7.9e-47 191.4 243 49.0
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 7.9e-47 191.4 241 51.0
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 1.0e-46 191.0 251 49.8
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.0e-46 191.0 242 49.6
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.0e-46 191.0 261 48.7
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 1.3e-46 190.7 241 51.9
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 1.8e-46 190.3 238 48.3
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 2.3e-46 189.9 248 48.4
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 3.0e-46 189.5 247 49.8
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 3.9e-46 189.1 251 49.4
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 3.9e-46 189.1 279 47.0
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 5.1e-46 188.7 232 51.3
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 5.1e-46 188.7 254 48.8
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 6.7e-46 188.3 249 49.4
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 6.7e-46 188.3 241 53.1
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 1.5e-45 187.2 260 46.5
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 1.9e-45 186.8 252 48.8
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 3.3e-45 186.0 254 50.0
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 4.3e-45 185.7 259 47.1
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 5.6e-45 185.3 252 48.4
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 9.6e-45 184.5 240 50.4
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 2.1e-44 183.3 227 52.9
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 4.8e-44 182.2 259 44.4
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 8.1e-44 181.4 220 52.3
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 1.1e-43 181.0 254 48.0
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 1.4e-43 180.6 254 47.6
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 2.4e-43 179.9 244 46.7
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 3.1e-43 179.5 250 44.8
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 4.0e-43 179.1 246 46.7
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 6.9e-43 178.3 246 46.3
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 9.0e-43 177.9 249 47.4
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.2e-42 177.6 258 47.7
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 1.5e-42 177.2 243 45.3
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 2.6e-42 176.4 242 44.6
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 5.8e-42 175.3 253 46.2
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 1.7e-41 173.7 154 61.7
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.9e-41 172.9 242 44.6
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 6.4e-41 171.8 245 44.9
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 8.4e-41 171.4 248 44.0
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 4.2e-40 169.1 293 40.6
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 5.5e-40 168.7 239 46.9
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.1e-39 166.8 246 44.7
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.7e-39 166.4 246 44.7
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 3.5e-39 166.0 154 61.7
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.3e-38 164.1 154 59.1
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.9e-38 162.5 301 37.9
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 6.7e-38 161.8 247 46.2
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.1e-37 161.0 153 56.9
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 2.5e-37 159.8 259 44.4
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 2.8e-36 156.4 97 82.5
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 3.7e-36 156.0 261 40.2
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 5.3e-35 152.1 176 52.8
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 6.9e-35 151.8 218 47.7
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 8.4e-33 144.8 117 65.0
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 2.7e-31 139.8 284 36.6
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 6.7e-30 135.2 99 68.7
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 9.7e-29 131.3 123 58.5
Glyma.09G148800 Glycine max HOM05D005135 ORTHO05D005810 3.7e-28 129.4 99 75.8
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 5.9e-26 122.1 194 45.4
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 4.2e-24 115.9 220 38.6
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 4.5e-18 95.9 66 77.3
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 7.7e-18 95.1 110 53.6
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.9e-17 93.2 177 35.0
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.7e-15 86.7 181 40.9
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.4e-14 84.3 174 39.7
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 3.3e-13 79.7 270 31.5
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.3e-12 77.8 60 66.7
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 3.7e-12 76.3 206 35.0
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 6.3e-12 75.5 64 62.5
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 4.5e-10 69.3 91 42.9
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 5.9e-10 68.9 214 33.2
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 5.9e-10 68.9 177 36.7
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 1.1e-08 64.7 66 56.1
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 8.8e-06 55.1 68 50.0


User provided reference genes

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