Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 2.9e-85 318.5 166 100.0
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 1.0e-82 310.1 166 98.2
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 6.8e-82 307.4 166 96.4
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 2.0e-81 305.8 166 95.8
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 5.8e-81 304.3 166 96.4
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 9.8e-81 303.5 166 95.8
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.1e-63 246.9 166 80.1
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 5.3e-50 201.4 170 68.8
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 4.0e-34 148.7 167 56.3
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 7.6e-33 144.4 168 56.0
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 4.6e-30 135.2 171 53.8
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 4.8e-27 125.2 167 50.3
Glyma.16G193050 Glycine max HOM05D004189 ORTHO05D004092 9.0e-26 120.9 64 95.3
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 1.2e-25 120.6 174 47.1
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.2e-25 120.6 167 47.3
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 3.4e-25 119.0 173 47.4
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 2.3e-21 106.3 170 44.1
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.9e-20 103.2 160 43.1
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 7.4e-20 101.3 167 45.5
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 9.7e-20 100.9 178 43.8
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.6e-19 100.1 167 44.9
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 3.7e-19 99.0 166 44.0
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 4.8e-19 98.6 164 44.5
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 6.3e-19 98.2 166 44.6
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 2.4e-18 96.3 164 43.3
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 5.3e-18 95.1 168 44.0
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 2.0e-17 93.2 166 42.8
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 2.6e-17 92.8 148 44.6
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 3.4e-17 92.4 165 42.4
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 3.4e-17 92.4 162 38.3
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 3.4e-17 92.4 132 44.7
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 4.5e-17 92.0 176 40.9
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 7.7e-17 91.3 133 44.4
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.3e-16 90.5 177 41.8
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 6.5e-16 88.2 163 38.7
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 8.5e-16 87.8 188 38.3
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 8.5e-16 87.8 108 53.7
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 8.5e-16 87.8 159 40.9
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 1.4e-15 87.0 152 41.4
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.4e-15 87.0 161 43.5
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 5.5e-15 85.1 157 40.1
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 7.2e-15 84.7 148 39.2
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 9.4e-15 84.3 162 42.0
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 1.2e-14 84.0 153 36.6
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 2.7e-14 82.8 158 38.0
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 2.7e-14 82.8 168 38.1
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 4.6e-14 82.0 169 36.7
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 1.0e-13 80.9 147 40.8
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 5.1e-13 78.6 172 39.5
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 8.8e-13 77.8 159 38.4
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 8.8e-13 77.8 153 39.9
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 8.8e-13 77.8 169 40.8
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.1e-12 77.4 164 37.8
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 3.3e-12 75.9 154 37.7
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 5.7e-12 75.1 143 38.5
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 7.4e-12 74.7 166 37.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 7.4e-12 74.7 169 36.1
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 9.7e-12 74.3 148 36.5
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.3e-11 73.9 143 39.2
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.7e-11 73.6 149 36.9
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 2.2e-11 73.2 134 35.1
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 2.8e-11 72.8 127 41.7
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 2.8e-11 72.8 171 35.1
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 3.7e-11 72.4 184 35.3
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 4.8e-11 72.0 154 37.7
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 4.8e-11 72.0 136 39.0
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 4.8e-11 72.0 143 37.1
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 8.2e-11 71.2 164 35.4
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.1e-10 70.9 123 37.4
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 1.4e-10 70.5 170 36.5
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.4e-10 70.5 164 35.4
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.4e-10 70.5 142 35.9
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 4.1e-10 68.9 159 35.8
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 6.9e-10 68.2 166 33.1
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.9e-10 68.2 143 37.8
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.9e-10 68.2 165 37.0
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 6.9e-10 68.2 128 39.1
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-09 67.0 144 36.8
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.6e-09 66.2 149 32.9
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 4.5e-09 65.5 164 34.1
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 4.5e-09 65.5 134 38.1
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 7.7e-09 64.7 124 37.1
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.0e-08 64.3 164 34.1
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.0e-08 64.3 148 34.5
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.0e-08 64.3 119 35.3
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 1.3e-08 63.9 143 33.6
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.7e-08 63.5 122 38.5
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.7e-08 63.5 122 38.5
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.7e-08 63.5 185 31.9
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.2e-08 63.2 181 33.1
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 3.8e-08 62.4 164 34.1
DCAR_022326 Daucus carota HOM05D004189 ORTHO05D004092 5.0e-08 62.0 85 44.7
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 6.5e-08 61.6 181 32.6
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 6.5e-08 61.6 148 33.8
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 6.5e-08 61.6 162 34.0
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.1e-07 60.8 164 33.5
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-07 60.8 164 33.5
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.1e-07 60.8 186 33.3
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.1e-07 60.8 172 32.0
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 2.5e-07 59.7 163 35.6
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.5e-07 59.7 133 31.6
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.5e-07 59.7 122 37.7
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 2.5e-07 59.7 88 46.6
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 5.5e-07 58.5 130 33.8
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 5.5e-07 58.5 152 33.6
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 7.2e-07 58.2 45 62.2
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 7.2e-07 58.2 163 34.4
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 7.2e-07 58.2 148 35.8
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.2e-07 58.2 163 35.0
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 9.4e-07 57.8 137 33.6
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 2.1e-06 56.6 65 47.7
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 3.6e-06 55.8 104 41.3
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.6e-06 55.8 144 30.6
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.6e-06 55.8 123 35.0
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.7e-06 55.5 160 34.4
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 6.1e-06 55.1 35 68.6
MBI17_g21975_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 6.1e-06 55.1 130 31.5
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 6.1e-06 55.1 45 64.4


User provided reference genes

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