Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 0.0e+00 1332.0 691 100.0
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 2.1e-254 882.5 691 69.8
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 5.4e-242 841.3 696 65.4
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 2.2e-235 819.3 695 63.7
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 4.6e-233 811.6 698 63.9
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.4e-229 800.0 702 64.7
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 2.4e-229 799.3 698 63.3
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 1.1e-226 790.4 697 63.1
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 4.6e-225 785.0 691 62.8
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 5.7e-223 778.1 691 63.1
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 2.6e-220 769.2 698 61.6
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 1.1e-215 753.8 697 60.4
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.5e-215 753.4 693 61.2
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 1.5e-215 753.4 715 59.2
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 2.5e-215 752.7 711 58.6
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 4.4e-207 725.3 694 58.4
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 7.7e-204 714.5 718 56.8
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 5.0e-195 685.3 716 55.0
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 8.2e-190 667.9 746 53.6
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 1.6e-188 663.7 696 58.3
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 7.2e-186 654.8 724 55.7
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 6.5e-179 631.7 715 53.1
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 7.2e-178 628.2 618 55.7
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 1.1e-170 604.4 712 53.7
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 3.3e-170 602.8 720 52.4
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 1.8e-168 597.0 723 50.5
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 3.0e-168 596.3 728 51.0
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 2.9e-166 589.7 712 52.8
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 4.6e-164 582.4 721 50.6
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 7.8e-164 581.6 709 51.9
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 5.0e-163 578.9 716 51.4
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 7.3e-162 575.1 650 53.5
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.2e-161 574.3 712 50.6
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 8.0e-161 571.6 728 50.1
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 8.0e-161 571.6 778 47.3
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 1.4e-160 570.9 713 49.9
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 2.6e-159 566.6 713 51.5
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 5.8e-159 565.5 706 52.1
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 1.3e-158 564.3 710 49.0
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 6.4e-158 562.0 712 48.9
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 2.4e-157 560.1 711 48.5
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 9.2e-157 558.1 655 53.0
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 6.0e-156 555.4 718 47.8
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 1.0e-155 554.7 716 49.0
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 5.0e-155 552.4 722 50.6
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.9e-154 550.4 711 50.6
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 1.2e-153 547.7 725 48.6
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 2.8e-153 546.6 721 48.7
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 3.1e-152 543.1 699 48.4
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 5.2e-152 542.3 727 48.7
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 2.6e-151 540.0 723 50.5
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 1.3e-150 537.7 716 48.5
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 2.9e-150 536.6 696 49.6
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 6.4e-150 535.4 701 48.1
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 6.4e-150 535.4 722 47.9
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 1.2e-148 531.2 735 47.8
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 8.6e-147 525.0 744 46.5
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 1.9e-146 523.9 733 48.4
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 2.8e-145 520.0 713 48.8
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.8e-144 517.3 710 48.3
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.8e-142 509.6 711 49.2
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.2e-141 506.5 709 48.4
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 4.6e-140 502.7 705 45.7
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 5.1e-139 499.2 722 47.6
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.1e-138 498.0 714 48.7
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 8.1e-137 491.9 716 44.1
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 1.8e-136 490.7 724 47.2
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 5.8e-135 485.7 632 48.4
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 7.6e-135 485.3 728 44.4
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 2.2e-134 483.8 631 50.7
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 2.4e-133 480.3 707 44.0
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 4.2e-133 479.6 836 41.9
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 2.7e-132 476.9 624 49.5
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 3.3e-130 469.9 766 43.0
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 3.3e-130 469.9 813 40.8
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 4.3e-130 469.5 739 42.1
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 4.8e-129 466.1 732 42.9
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 6.2e-129 465.7 742 41.4
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.1e-128 463.4 783 41.5
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 1.5e-127 461.1 748 42.1
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 2.2e-126 457.2 707 42.9
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 6.4e-126 455.7 551 53.4
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 5.1e-123 446.0 709 43.2
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 6.7e-123 445.7 724 42.4
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 9.6e-122 441.8 701 40.7
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 2.1e-121 440.7 700 44.7
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 2.4e-120 437.2 783 41.1
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 2.0e-119 434.1 718 42.2
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 2.0e-119 434.1 720 41.2
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.0e-119 434.1 705 40.6
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 1.3e-118 431.4 705 42.6
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 8.4e-118 428.7 716 41.1
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 7.1e-117 425.6 710 42.1
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 2.1e-116 424.1 721 43.8
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 2.1e-116 424.1 709 41.0
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 2.7e-116 423.7 708 42.4
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 7.9e-116 422.2 708 42.1
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 3.0e-115 420.2 729 43.1
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 6.7e-115 419.1 516 52.3
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 1.3e-113 414.8 706 42.2
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 1.3e-113 414.8 718 39.4
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.5e-111 407.9 727 40.9
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 1.7e-110 404.4 699 39.9
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 4.9e-110 402.9 649 42.5
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 6.5e-110 402.5 640 44.2
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 1.6e-108 397.9 777 38.1
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 6.3e-105 386.0 642 42.5
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 1.8e-104 384.4 675 40.4
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 3.1e-104 383.6 792 36.7
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 2.2e-102 377.5 673 41.6
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 3.8e-102 376.7 480 50.2
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 1.4e-101 374.8 674 41.4
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 9.4e-101 372.1 676 40.8
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 1.2e-100 371.7 707 40.9
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 1.6e-100 371.3 674 40.9
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 7.9e-100 369.0 679 41.2
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 1.4e-99 368.2 672 40.3
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 6.7e-99 365.9 693 40.5
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 2.0e-98 364.4 673 40.6
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 9.7e-98 362.1 676 41.3
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 1.7e-97 361.3 649 38.1
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 2.8e-97 360.5 672 39.1
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 3.7e-97 360.1 682 39.3
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 3.1e-96 357.1 720 37.9
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 6.9e-96 355.9 442 54.1
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 2.6e-95 354.0 711 38.5
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 3.4e-95 353.6 721 36.9
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 4.5e-95 353.2 669 40.1
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 4.5e-95 353.2 676 40.2
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 1.7e-94 351.3 651 40.7
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 1.4e-93 348.2 580 41.4
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 5.5e-93 346.3 726 36.6
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 1.2e-92 345.1 677 39.9
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.8e-91 341.3 289 61.6
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.8e-91 341.3 719 40.1
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 3.9e-91 340.1 703 35.8
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 1.7e-89 334.7 849 33.1
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 1.1e-88 332.0 674 38.4
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 6.5e-86 322.8 685 35.6
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 4.7e-84 316.6 286 65.4
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 7.4e-82 309.3 289 54.3
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.5e-79 300.4 360 47.5
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 9.4e-77 292.4 715 35.0
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 8.8e-75 285.8 582 36.3
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 3.3e-74 283.9 289 55.0
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 1.7e-73 281.6 571 35.4
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 1.4e-72 278.5 242 57.9
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 5.3e-72 276.6 207 66.2
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.7e-70 271.6 446 43.3
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 7.2e-69 266.2 626 35.3
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 4.7e-68 263.5 324 46.0
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 9.1e-64 249.2 223 55.6
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 1.9e-61 241.5 222 54.1
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 5.5e-61 240.0 639 31.9
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 1.0e-54 219.2 167 77.8
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.0e-46 192.6 142 71.8
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.3e-46 192.2 432 35.0
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 4.7e-44 183.7 145 60.0
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 7.0e-40 169.9 216 44.4
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 6.0e-39 166.8 210 51.0
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 4.4e-34 150.6 245 37.6
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 2.5e-29 134.8 336 34.2
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 4.3e-29 134.0 308 31.2
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 2.4e-27 128.3 209 40.7
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 8.9e-27 126.3 459 30.7
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 2.0e-26 125.2 728 27.2
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 8.4e-25 119.8 196 50.5
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 6.0e-15 87.0 368 31.0
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 6.6e-14 83.6 99 50.5
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 6.9e-11 73.6 116 44.8
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 5.8e-10 70.5 70 52.9
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 6.4e-09 67.0 59 52.5
AagrBONN_evm.TU.Sc2ySwM_362.2615 Anthoceros agrestis HOM05D003626 ORTHO05D004255 7.1e-08 63.5 159 30.2
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.7e-07 61.6 60 46.7
FAN06G0571 Fragaria x ananassa HOM05D003626 ORTHO05D004255 6.0e-07 60.5 92 46.7
TAR636G0984 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.0e-06 58.2 54 53.7
HPP92_027487 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.9e-06 57.8 56 64.3
HPP92_028446 Vanilla planifolia HOM05D003626 ORTHO05D004255 8.7e-06 56.6 96 40.6


User provided reference genes

Program Settings