Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G132600 Glycine max HOM05D002831 ORTHO05D010484 4.4e-24 113.6 51 100.0
Glyma.16G179250 Glycine max HOM05D002831 ORTHO05D010484 4.4e-24 113.6 51 100.0
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 8.6e-20 99.4 51 88.2
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 5.6e-19 96.7 46 95.7
MD01G1208000 Malus domestica HOM05D002831 ORTHO05D010484 7.3e-19 96.3 53 83.0
Prupe.2G300500 Prunus persica HOM05D002831 ORTHO05D010484 7.3e-19 96.3 53 83.0
Atru.ctg97_1.17 Acer truncatum HOM05D002831 ORTHO05D010484 2.1e-18 94.7 53 83.0
Glyma.20G162551 Glycine max HOM05D002831 ORTHO05D010484 3.6e-18 94.0 53 83.0
Prupe.7G027400 Prunus persica HOM05D002831 ORTHO05D010484 6.2e-18 93.2 51 82.4
Potri.004G080000 Populus trichocarpa HOM05D002831 ORTHO05D010484 1.8e-17 91.7 53 79.2
Manes.14G022900 Manihot esculenta HOM05D002831 ORTHO05D010484 2.4e-17 91.3 53 77.4
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 4.0e-17 90.5 52 78.8
CiPaw.06G003200 Carya illinoinensis HOM05D002831 ORTHO05D010484 5.2e-17 90.1 53 79.2
Manes.06G152150 Manihot esculenta HOM05D002831 ORTHO05D010484 5.2e-17 90.1 53 75.5
Nn1g01626 Nelumbo nucifera HOM05D002831 ORTHO05D010484 5.2e-17 90.1 53 79.2
MD07G1278600 Malus domestica HOM05D002831 ORTHO05D010484 6.8e-17 89.7 53 77.4
Glyma.10G231251 Glycine max HOM05D002831 ORTHO05D010484 8.9e-17 89.4 53 75.5
CiPaw.06G003400 Carya illinoinensis HOM05D002831 ORTHO05D010484 1.2e-16 89.0 53 77.4
Potri.017G143300 Populus trichocarpa HOM05D002831 ORTHO05D010484 2.6e-16 87.8 53 75.5
Cc02_g02410 Coffea canephora HOM05D002831 ORTHO05D010484 3.4e-16 87.4 52 76.9
Peaxi162Scf00444g00118 Petunia axillaris HOM05D002831 ORTHO05D010484 5.8e-16 86.7 52 76.9
Thecc.03G183800 Theobroma cacao HOM05D002831 ORTHO05D010484 9.9e-16 85.9 53 73.6
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 9.9e-16 85.9 52 73.1
CSS0001563 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.7e-15 85.1 53 71.7
CSS0038907 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.7e-15 85.1 53 71.7
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 4.9e-15 83.6 52 69.2
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 6.4e-15 83.2 52 75.0
Gohir.D09G177300 Gossypium hirsutum HOM05D002831 ORTHO05D010484 8.4e-15 82.8 53 71.7
Lalb_Chr02g0141241 Lupinus albus HOM05D002831 ORTHO05D010484 8.4e-15 82.8 54 75.9
Gohir.D11G011200 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.1e-14 82.4 53 71.7
Gorai.006G199300 Gossypium raimondii HOM05D002831 ORTHO05D010484 1.1e-14 82.4 53 69.8
Gohir.A11G012000 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.4e-14 82.0 53 71.7
Nitab4.5_0000084g0420 Nicotiana tabacum HOM05D002831 ORTHO05D010484 1.4e-14 82.0 51 74.5
Solyc03g007990.2 Solanum lycopersicum HOM05D002831 ORTHO05D010484 5.4e-14 80.1 52 73.1
ClCG05G008350 Citrullus lanatus HOM05D002831 ORTHO05D010484 2.1e-13 78.2 53 67.9
Nitab4.5_0003825g0100 Nicotiana tabacum HOM05D002831 ORTHO05D010484 2.7e-13 77.8 51 74.5
Lalb_Chr21g0305231 Lupinus albus HOM05D002831 ORTHO05D010484 3.5e-13 77.4 54 72.2
Carub.0008s1269 Capsella rubella HOM05D002831 ORTHO05D010484 4.6e-13 77.0 53 69.8
Lalb_Chr03g0034821 Lupinus albus HOM05D002831 ORTHO05D010484 4.6e-13 77.0 50 70.0
FAN03G0192 Fragaria x ananassa HOM05D002831 ORTHO05D010484 1.3e-12 75.5 52 69.2
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 1.7e-12 75.1 44 79.5
BolC1t02047H Brassica oleracea HOM05D002831 ORTHO05D010484 2.3e-12 74.7 51 68.6
BraA01t01646Z Brassica rapa HOM05D002831 ORTHO05D010484 2.3e-12 74.7 51 68.6
Gohir.A12G255400 Gossypium hirsutum HOM05D002831 ORTHO05D010484 3.9e-12 73.9 53 64.2
Gohir.D12G256800 Gossypium hirsutum HOM05D002831 ORTHO05D010484 3.9e-12 73.9 53 64.2
Gorai.008G275000 Gossypium raimondii HOM05D002831 ORTHO05D010484 3.9e-12 73.9 53 64.2
CAN.G126.13 Capsicum annuum HOM05D002831 ORTHO05D010484 5.1e-12 73.6 52 67.3
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 5.1e-12 73.6 44 75.0
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.6e-12 73.2 44 75.0
CARHR233120 Cardamine hirsuta HOM05D002831 ORTHO05D010484 1.1e-11 72.4 53 67.9
CiPaw.12G018400 Carya illinoinensis HOM05D002831 ORTHO05D010484 1.5e-11 72.0 44 75.0
CAN.G204.17 Capsicum annuum HOM05D002831 ORTHO05D010484 5.6e-11 70.1 52 67.3
Carub.0007s1529 Capsella rubella HOM05D002831 ORTHO05D010484 9.6e-11 69.3 53 64.2
BolC1t02050H Brassica oleracea HOM05D002831 ORTHO05D010484 1.3e-10 68.9 53 66.0
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 1.3e-10 68.9 48 66.7
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 2.1e-10 68.2 43 72.1
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.1e-10 68.2 46 67.4
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 2.1e-10 68.2 43 76.7
BraA01t01649Z Brassica rapa HOM05D002831 ORTHO05D010484 3.6e-10 67.4 53 64.2
CSS0020125 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 6.2e-10 66.6 53 62.3
CSS0026204 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 6.2e-10 66.6 53 62.3
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 1.1e-09 65.9 45 64.4
A03p56200 Brassica napus HOM05D002831 ORTHO05D010484 1.8e-09 65.1 51 58.8
BraA03t14690Z Brassica rapa HOM05D002831 ORTHO05D010484 1.8e-09 65.1 51 58.8
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.1e-09 64.3 46 58.7
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 4.0e-09 63.9 45 64.4
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 4.0e-09 63.9 43 72.1
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 1.2e-08 62.4 38 65.8
Lalb_Chr06g0161311 Lupinus albus HOM05D002831 ORTHO05D010484 2.0e-08 61.6 44 72.7
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 3.4e-08 60.8 46 58.7
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 5.8e-08 60.1 53 54.7
A02p11710 Brassica napus HOM05D002831 ORTHO05D010484 9.9e-08 59.3 32 75.0
BolC7t45935H Brassica oleracea HOM05D002831 ORTHO05D010484 9.9e-08 59.3 51 54.9
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.7e-07 58.5 37 67.6
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.8e-07 57.4 43 69.8
Peaxi162Scf00618g00726 Petunia axillaris HOM05D002831 ORTHO05D010484 6.4e-07 56.6 43 65.1
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 1.4e-06 55.5 41 63.4
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.9e-06 55.1 47 53.2
CARHR233140 Cardamine hirsuta HOM05D002831 ORTHO05D010484 3.2e-06 54.3 33 66.7


User provided reference genes

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