Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G172700 Glycine max HOM05D006803 ORTHO05D008552 3.9e-96 354.8 175 100.0
Glyma.09G125800 Glycine max HOM05D006803 ORTHO05D008552 3.9e-80 301.6 171 88.3
VMungo0464G0281 Vigna mungo HOM05D006803 ORTHO05D008552 5.2e-64 248.1 176 79.0
Phvul.004G101300 Phaseolus vulgaris HOM05D006803 ORTHO05D008552 5.7e-63 244.6 180 76.1
Lj2g0024519 Lotus japonicus HOM05D006803 ORTHO05D008552 1.7e-51 206.5 171 64.3
Ca_19336_v3 Cicer arietinum L. HOM05D006803 ORTHO05D008552 6.5e-51 204.5 173 65.3
arahy.Tifrunner.gnm1.ann1.GHK1U8 Arachis hypogaea HOM05D006803 ORTHO05D008552 1.5e-50 203.4 173 64.2
arahy.Tifrunner.gnm1.ann1.V6YLC6 Arachis hypogaea HOM05D006803 ORTHO05D008552 1.5e-50 203.4 173 64.2
QL09p011586 Quercus lobata HOM05D006803 ORTHO05D008552 6.1e-49 198.0 147 67.3
Lalb_Chr01g0009661 Lupinus albus HOM05D006803 ORTHO05D008552 8.0e-49 197.6 179 62.0
TPR.G36689 Trifolium pratense HOM05D006803 ORTHO05D008552 8.0e-49 197.6 180 61.1
FAN03G2299 Fragaria x ananassa HOM05D006803 ORTHO05D008552 6.8e-48 194.5 142 66.2
Psat1g097000 Pisum sativum HOM05D006803 ORTHO05D008552 6.8e-48 194.5 174 62.6
Thecc.03G190700 Theobroma cacao HOM05D006803 ORTHO05D008552 6.8e-48 194.5 111 76.6
Medtr6g034205 Medicago truncatula HOM05D006803 ORTHO05D008552 2.0e-47 193.0 171 62.6
Dinv28351 Davidia involucrata HOM05D006803 ORTHO05D008552 2.6e-47 192.6 112 77.7
Eucgr.K00316 Eucalyptus grandis HOM05D006803 ORTHO05D008552 2.6e-47 192.6 141 68.1
Duzib084G0216 Durio zibethinus HOM05D006803 ORTHO05D008552 5.7e-47 191.4 171 60.2
FAN10G2870 Fragaria x ananassa HOM05D006803 ORTHO05D008552 5.7e-47 191.4 162 61.7
COL.COLO4_07418 Corchorus olitorius HOM05D006803 ORTHO05D008552 2.8e-46 189.1 169 57.4
RcHm_v2.0_Chr1g0379821 Rosa chinensis HOM05D006803 ORTHO05D008552 2.8e-46 189.1 161 59.6
ClCG05G008590 Citrullus lanatus HOM05D006803 ORTHO05D008552 6.3e-46 188.0 111 75.7
vmacro06587 Vaccinium macrocarpon HOM05D006803 ORTHO05D008552 6.3e-46 188.0 111 77.5
FAN01G0710 Fragaria x ananassa HOM05D006803 ORTHO05D008552 8.3e-46 187.6 162 60.5
MELO3C006968.2 Cucumis melo HOM05D006803 ORTHO05D008552 1.1e-45 187.2 159 61.0
FvH4_7g30800 Fragaria vesca HOM05D006803 ORTHO05D008552 1.1e-45 187.2 162 60.5
Potri.012G033700 Populus trichocarpa HOM05D006803 ORTHO05D008552 1.1e-45 187.2 172 57.6
unitig_37.g11977 Utricularia gibba HOM05D000211 ORTHO05D002285 1.1e-45 187.2 112 75.9
Hund11694 Selenicereus undatus HOM05D006803 ORTHO05D008552 1.4e-45 186.8 162 59.3
Cpa.g.sc3.33 Carica papaya HOM05D006803 ORTHO05D008552 2.4e-45 186.0 157 61.1
GSVIVG01028745001 Vitis vinifera HOM05D006803 ORTHO05D008552 4.1e-45 185.3 169 59.2
BraA10t43128Z Brassica rapa HOM05D006803 ORTHO05D008552 5.4e-45 184.9 111 74.8
Prupe.2G305500 Prunus persica HOM05D006803 ORTHO05D008552 5.4e-45 184.9 166 58.4
C09p42680 Brassica napus HOM05D006803 ORTHO05D008552 7.0e-45 184.5 111 74.8
BolC9t57144H Brassica oleracea HOM05D006803 ORTHO05D008552 7.0e-45 184.5 111 74.8
Carub.0008s1314 Capsella rubella HOM05D006803 ORTHO05D008552 7.0e-45 184.5 109 75.2
FAN06G1048 Fragaria x ananassa HOM05D006803 ORTHO05D008552 7.0e-45 184.5 174 57.5
FAN06G4527 Fragaria x ananassa HOM05D006803 ORTHO05D008552 7.0e-45 184.5 174 57.5
TWI14G0759 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 7.0e-45 184.5 159 61.0
MD07G1283300 Malus domestica HOM05D006803 ORTHO05D008552 9.1e-45 184.1 133 66.2
CiPaw.05G259100 Carya illinoinensis HOM05D006803 ORTHO05D008552 1.6e-44 183.3 173 59.0
Gohir.D08G108400 Gossypium hirsutum HOM05D006803 ORTHO05D008552 1.6e-44 183.3 163 60.1
Gorai.004G116000 Gossypium raimondii HOM05D006803 ORTHO05D008552 1.6e-44 183.3 163 60.1
PGR142G1334 Punica granatum HOM05D006803 ORTHO05D008552 1.6e-44 183.3 157 61.1
AT5G52960 Arabidopsis thaliana HOM05D006803 ORTHO05D008552 2.0e-44 183.0 111 73.0
Thhalv10014833m.g Eutrema salsugineum HOM05D006803 ORTHO05D008552 2.0e-44 183.0 114 71.9
MD01G1213500 Malus domestica HOM05D006803 ORTHO05D008552 2.0e-44 183.0 164 57.9
Sp6g15120 Schrenkiella parvula HOM05D006803 ORTHO05D008552 2.0e-44 183.0 111 73.9
A10p10450 Brassica napus HOM05D006803 ORTHO05D008552 2.7e-44 182.6 166 57.2
Duzib205G0804 Durio zibethinus HOM05D006803 ORTHO05D008552 2.7e-44 182.6 168 57.1
CANSAT21G0672 Cannabis sativa HOM05D006803 ORTHO05D008552 3.5e-44 182.2 98 82.7
THA.LOC104825126 Tarenaya hassleriana HOM05D006803 ORTHO05D008552 3.5e-44 182.2 170 57.6
Lsat_1_v5_gn_9_57340 Lactuca sativa HOM05D006803 ORTHO05D008552 4.5e-44 181.8 98 78.6
Aa31LG3G9190 Aethionema arabicum HOM05D006803 ORTHO05D008552 5.9e-44 181.4 116 69.0
Hma1.2p1_0327F.1_g126650 Hydrangea macrophylla HOM05D006803 ORTHO05D008552 7.7e-44 181.0 176 56.2
Cc02_g02040 Coffea canephora HOM05D006803 ORTHO05D008552 1.3e-43 180.3 97 80.4
Sed0009140 Sechium edule HOM05D006803 ORTHO05D008552 1.3e-43 180.3 175 57.1
CDE04G2534 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 1.7e-43 179.9 98 78.6
SalBow4G1856 Salvia bowleyana HOM05D006803 ORTHO05D008552 1.7e-43 179.9 109 76.1
SalBow4G1881 Salvia bowleyana HOM05D006803 ORTHO05D008552 1.7e-43 179.9 109 76.1
TAR333G0006 Trochodendron aralioides HOM05D006803 ORTHO05D008552 1.7e-43 179.9 134 65.7
Ciclev10006070m.g Citrus clementina HOM05D006803 ORTHO05D008552 2.3e-43 179.5 176 56.2
Nn1g01776 Nelumbo nucifera HOM05D006803 ORTHO05D008552 2.3e-43 179.5 109 73.4
SGA_v2.0_scaffold44G16771 Striga asiatica HOM05D006803 ORTHO05D008552 2.3e-43 179.5 134 66.4
CDE03G0029 Ceratophyllum demersum HOM05D006803 ORTHO05D008552 2.9e-43 179.1 98 78.6
Actinidia34181 Actinidia chinensis HOM05D006803 ORTHO05D008552 8.6e-43 177.6 175 56.0
Sc19g0001080 Simmondsia chinensis HOM05D006803 ORTHO05D008552 1.5e-42 176.8 96 80.2
ATR0721G182 Amborella trichopoda HOM05D006803 ORTHO05D008552 1.9e-42 176.4 97 80.4
Gohir.A08G097600 Gossypium hirsutum HOM05D006803 ORTHO05D008552 1.9e-42 176.4 163 58.9
Peaxi162Scf00904g00457 Petunia axillaris HOM05D006803 ORTHO05D008552 3.3e-42 175.6 165 55.8
TWI39G0241 Tripterygium wilfordii HOM05D006803 ORTHO05D008552 3.3e-42 175.6 105 75.2
DCAR_014527 Daucus carota HOM05D006803 ORTHO05D008552 4.2e-42 175.3 97 76.3
Rhsim03G0197200 Rhododendron simsii HOM05D006803 ORTHO05D008552 4.2e-42 175.3 98 80.6
Zm00001eb296320 Zea mays HOM05D006803 ORTHO05D008552 4.2e-42 175.3 103 75.7
CSS0034587 Camellia sinensis var. sinensis HOM05D006803 ORTHO05D008552 5.6e-42 174.9 96 78.1
Manes.14G019756 Manihot esculenta HOM05D006803 ORTHO05D008552 5.6e-42 174.9 173 57.2
Oeu044167.1 Olea europaea HOM05D006803 ORTHO05D008552 5.6e-42 174.9 165 61.2
MBI06_g04289_MAGBIO Magnolia biondii HOM05D006803 ORTHO05D008552 7.2e-42 174.5 138 65.9
Aqoxy7G00212 Aquilegia oxysepala HOM05D006803 ORTHO05D008552 1.2e-41 173.7 98 77.6
PSO384G2893 Papaver somniferum HOM05D006803 ORTHO05D008552 1.2e-41 173.7 99 77.8
AL8G27460 Arabidopsis lyrata HOM05D006803 ORTHO05D008552 1.6e-41 173.3 179 53.1
Sed0024434 Sechium edule HOM05D006803 ORTHO05D008552 2.1e-41 172.9 129 63.6
Sabra15G0018100 Salix brachista HOM05D006803 ORTHO05D008552 4.7e-41 171.8 188 50.0
Solyc03g007540.3 Solanum lycopersicum HOM05D006803 ORTHO05D008552 4.7e-41 171.8 164 56.1
Sopen03g003500 Solanum pennellii HOM05D006803 ORTHO05D008552 4.7e-41 171.8 164 56.1
ECA232G4170 Erigeron canadensis HOM05D006803 ORTHO05D008552 6.1e-41 171.4 100 76.0
Sabra15G0020600 Salix brachista HOM05D006803 ORTHO05D008552 6.1e-41 171.4 188 49.5
PGSC0003DMG400009065 Solanum tuberosum HOM05D006803 ORTHO05D008552 6.1e-41 171.4 164 56.1
Lj3C914T13 Lonicera japonica HOM05D006803 ORTHO05D008552 8.0e-41 171.0 129 64.3
Mapoly0006s0111 Marchantia polymorpha HOM05D006803 ORTHO05D008552 8.0e-41 171.0 109 68.8
Atru.chr1.293 Acer truncatum HOM05D006803 ORTHO05D008552 1.0e-40 170.6 188 51.6
Potri.016G123100 Populus trichocarpa HOM05D006803 ORTHO05D008552 2.3e-40 169.5 156 55.1
PSO135G0887 Papaver somniferum HOM05D006803 ORTHO05D008552 4.0e-40 168.7 175 53.1
HanXRQChr09g0253111 Helianthus annuus HOM05D006803 ORTHO05D008552 6.8e-40 167.9 162 53.7
CAN.G108.11 Capsicum annuum HOM05D006803 ORTHO05D008552 1.2e-39 167.2 169 54.4
Os05g0569200 Oryza sativa ssp. japonica HOM05D006803 ORTHO05D008552 1.5e-39 166.8 158 55.1
EL10Ac3g05364 Beta vulgaris HOM05D006803 ORTHO05D008552 2.6e-39 166.0 185 52.4
Migut.F00254 Erythranthe guttata HOM05D006803 ORTHO05D008552 4.4e-39 165.2 170 53.5
Actinidia08612 Actinidia chinensis HOM05D006803 ORTHO05D008552 9.8e-39 164.1 174 52.3
SEGI_13941 Sequoiadendron giganteum HOM05D006803 ORTHO05D008552 1.1e-37 160.6 97 71.1
Sabra12G0022800 Salix brachista HOM05D006803 ORTHO05D008552 9.2e-37 157.5 247 39.7
Pp3c4_26620 Physcomitrium patens HOM05D006803 ORTHO05D008552 1.2e-36 157.1 91 73.6
SMO169G0228 Selaginella moellendorffii HOM05D006803 ORTHO05D008552 1.6e-36 156.8 112 62.5
AagrBONN_evm.TU.Sc2ySwM_228.1351 Anthoceros agrestis HOM05D006803 ORTHO05D008552 2.7e-36 156.0 92 71.7
Pp3c26_8430 Physcomitrium patens HOM05D006803 ORTHO05D008552 1.6e-33 146.7 88 69.3
CBR_g9073 Chara braunii HOM05D006803 ORTHO05D008552 2.6e-31 139.4 112 59.8
CARHR265930 Cardamine hirsuta HOM05D006803 ORTHO05D008552 1.6e-28 130.2 81 70.4
Nitab4.5_0000472g0050 Nicotiana tabacum HOM05D006803 ORTHO05D008552 3.0e-27 125.9 173 48.6
Eucgr.L03342 Eucalyptus grandis HOM05D006803 ORTHO05D008552 3.9e-27 125.6 106 60.4
Nitab4.5_0001331g0090 Nicotiana tabacum HOM05D006803 ORTHO05D008552 3.9e-27 125.6 171 46.8
Haze_00093 Corylus avellana HOM05D006803 ORTHO05D008552 5.0e-27 125.2 140 52.1
HPP92_011456 Vanilla planifolia HOM05D006803 ORTHO05D008552 2.3e-24 116.3 65 78.5
BcaB08g35659 Brassica carinata HOM05D006803 ORTHO05D008552 6.8e-24 114.8 126 54.8
Oeu059677.1 Olea europaea HOM05D006803 ORTHO05D008552 1.6e-20 103.6 78 64.1
Oeu008094.1 Olea europaea HOM05D006803 ORTHO05D008552 9.5e-18 94.4 67 65.7
Oeu059693.1 Olea europaea HOM05D006803 ORTHO05D008552 4.7e-17 92.0 67 65.7
RcHm_v2.0_Chr1g0379761 Rosa chinensis HOM05D006803 ORTHO05D008552 5.1e-11 72.0 35 94.3
Thecc.03G190900 Theobroma cacao HOM05D006803 ORTHO05D008552 5.1e-11 72.0 36 88.9


User provided reference genes

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