Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G161700 Glycine max HOM05D007822 ORTHO05D009360 2.3e-237 825.1 394 100.0
Glyma.15G092300 Glycine max HOM05D007822 ORTHO05D009360 1.8e-136 490.0 392 65.8
Phvul.001G265100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.6e-121 440.3 385 57.1
Phvul.003G159000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 8.2e-118 427.9 385 57.4
Phvul.004G062200 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.8e-117 426.8 384 57.0
Phvul.001G264800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 4.7e-113 412.1 380 55.5
Phvul.002G276000 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 5.1e-112 408.7 380 55.5
Phvul.006G052100 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.5e-111 407.1 381 55.6
Ca_08383_v3 Cicer arietinum L. HOM05D007822 ORTHO05D009360 3.0e-104 382.9 390 53.1
Phvul.004G062300 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 6.7e-104 381.7 343 57.4
Phvul.006G051600 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 1.5e-103 380.6 353 56.4
Medtr1g016400 Medicago truncatula HOM05D007822 ORTHO05D009360 1.3e-102 377.5 384 51.3
TPR.G18087 Trifolium pratense HOM05D007822 ORTHO05D009360 1.7e-102 377.1 389 50.4
Medtr1g017120 Medicago truncatula HOM05D007822 ORTHO05D009360 2.8e-102 376.3 384 51.0
Medtr3g084690 Medicago truncatula HOM05D007822 ORTHO05D009360 3.7e-102 375.9 389 49.1
Phvul.001G264900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 2.4e-101 373.2 381 52.0
arahy.Tifrunner.gnm1.ann1.A760R9 Arachis hypogaea HOM05D007822 ORTHO05D009360 3.5e-100 369.4 402 50.2
Glyma.03G020200 Glycine max HOM05D007822 ORTHO05D009360 1.0e-99 367.9 395 51.6
TPR.G18082 Trifolium pratense HOM05D007822 ORTHO05D009360 6.5e-99 365.2 386 49.2
VMungo1215G0886 Vigna mungo HOM05D007822 ORTHO05D009360 4.5e-92 342.4 398 46.5
arahy.Tifrunner.gnm1.ann1.Z44N3D Arachis hypogaea HOM05D007822 ORTHO05D009360 8.5e-91 338.2 391 49.1
TPR.G34642 Trifolium pratense HOM05D007822 ORTHO05D009360 8.5e-91 338.2 389 46.5
arahy.Tifrunner.gnm1.ann1.N9Y9CH Arachis hypogaea HOM05D007822 ORTHO05D009360 1.9e-90 337.0 399 47.6
arahy.Tifrunner.gnm1.ann1.6X56G5 Arachis hypogaea HOM05D007822 ORTHO05D009360 2.1e-89 333.6 375 49.1
arahy.Tifrunner.gnm1.ann1.JJB16R Arachis hypogaea HOM05D007822 ORTHO05D009360 6.8e-88 328.6 392 49.0
TPR.G19769 Trifolium pratense HOM05D007822 ORTHO05D009360 1.2e-87 327.8 322 51.2
arahy.Tifrunner.gnm1.ann1.HWH8LL Arachis hypogaea HOM05D007822 ORTHO05D009360 4.4e-87 325.9 402 46.3
Dinv16858 Davidia involucrata HOM05D007822 ORTHO05D009360 7.5e-87 325.1 385 43.6
TPR.G33992 Trifolium pratense HOM05D007822 ORTHO05D009360 1.3e-86 324.3 385 45.2
Phvul.006G051800 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 3.7e-86 322.8 328 54.0
arahy.Tifrunner.gnm1.ann1.00A0K2 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.7e-83 313.9 364 48.6
Medtr2g450270 Medicago truncatula HOM05D007822 ORTHO05D009360 6.5e-83 312.0 392 44.6
arahy.Tifrunner.gnm1.ann1.30JHYY Arachis hypogaea HOM05D007822 ORTHO05D009360 1.2e-81 307.8 401 45.1
arahy.Tifrunner.gnm1.ann1.2QW5CK Arachis hypogaea HOM05D007822 ORTHO05D009360 8.0e-81 305.1 393 46.3
Prupe.2G273800 Prunus persica HOM05D007822 ORTHO05D009360 6.8e-80 302.0 405 42.5
Lalb_Chr07g0186991 Lupinus albus HOM05D007822 ORTHO05D009360 2.6e-79 300.1 383 43.3
Phvul.006G051900 Phaseolus vulgaris HOM05D007822 ORTHO05D009360 4.1e-77 292.7 230 60.4
TPR.G34648 Trifolium pratense HOM05D007822 ORTHO05D009360 2.3e-75 287.0 316 46.5
arahy.Tifrunner.gnm1.ann1.GB1I3E Arachis hypogaea HOM05D007822 ORTHO05D009360 1.9e-74 283.9 393 42.2
Lalb_Chr23g0273121 Lupinus albus HOM05D007822 ORTHO05D009360 5.8e-71 272.3 223 56.5
Rhsim09G0189100 Rhododendron simsii HOM05D007822 ORTHO05D009360 1.6e-68 264.2 389 40.6
arahy.Tifrunner.gnm1.ann1.B28JH2 Arachis hypogaea HOM05D007822 ORTHO05D009360 3.9e-67 259.6 309 46.6
Rhsim01G0262200 Rhododendron simsii HOM05D007822 ORTHO05D009360 4.3e-66 256.1 390 37.7
arahy.Tifrunner.gnm1.ann1.SE6DU5 Arachis hypogaea HOM05D007822 ORTHO05D009360 7.5e-63 245.4 235 53.6
arahy.Tifrunner.gnm1.ann1.UXA4FW Arachis hypogaea HOM05D007822 ORTHO05D009360 1.9e-61 240.7 326 43.6
Psat2g094240 Pisum sativum HOM05D007822 ORTHO05D009360 4.1e-61 239.6 234 52.1
Oeu042537.1 Olea europaea HOM05D007822 ORTHO05D009360 2.3e-59 233.8 390 33.8
Sc09g0001460 Simmondsia chinensis HOM05D007822 ORTHO05D009360 1.1e-58 231.5 400 35.5
arahy.Tifrunner.gnm1.ann1.97QIN4 Arachis hypogaea HOM05D007822 ORTHO05D009360 3.3e-58 229.9 256 48.4
Rhsim09G0015300 Rhododendron simsii HOM05D007822 ORTHO05D009360 2.8e-57 226.9 389 36.5
arahy.Tifrunner.gnm1.ann1.UHL69B Arachis hypogaea HOM05D007822 ORTHO05D009360 2.6e-55 220.3 259 47.1
Sc09g0001470 Simmondsia chinensis HOM05D007822 ORTHO05D009360 2.9e-54 216.9 406 35.0
VMungo1309G2027 Vigna mungo HOM05D007822 ORTHO05D009360 9.2e-53 211.8 248 45.6
arahy.Tifrunner.gnm1.ann1.IQQ1WH Arachis hypogaea HOM05D007822 ORTHO05D009360 1.0e-51 208.4 198 53.0
Medtr6g034615 Medicago truncatula HOM05D007822 ORTHO05D009360 1.9e-42 177.6 165 52.7
TPR.G19772 Trifolium pratense HOM05D007822 ORTHO05D009360 6.9e-40 169.1 204 44.1
TPR.G11880 Trifolium pratense HOM05D000005 ORTHO05D009360 3.4e-39 166.8 179 47.5
arahy.Tifrunner.gnm1.ann1.LY7S5B Arachis hypogaea HOM05D007822 ORTHO05D009360 9.9e-39 165.2 300 35.7
TPR.G33966 Trifolium pratense HOM05D007822 ORTHO05D009360 3.2e-37 160.2 125 58.4
DCAR_014640 Daucus carota HOM05D007822 ORTHO05D009360 1.5e-34 151.4 205 41.5
RhsimUnG0026200 Rhododendron simsii HOM05D007822 ORTHO05D009360 2.6e-31 140.6 192 38.5
arahy.Tifrunner.gnm1.ann1.JV62Q3 Arachis hypogaea HOM05D007822 ORTHO05D009360 1.0e-27 128.6 126 47.6
Rhsim10G0180500 Rhododendron simsii HOM05D007822 ORTHO05D009360 3.0e-27 127.1 221 36.7
Lalb_Chr23g0273131 Lupinus albus HOM05D007822 ORTHO05D009360 5.6e-26 122.9 103 58.3
Psat5g098960 Pisum sativum HOM05D007822 ORTHO05D009360 1.1e-24 118.6 135 45.9
Medtr6g060160 Medicago truncatula HOM05D007822 ORTHO05D009360 1.4e-24 118.2 153 43.1
Psat5g099000 Pisum sativum HOM05D007822 ORTHO05D009360 4.0e-24 116.7 123 45.5
Medtr3g084660 Medicago truncatula HOM05D007822 ORTHO05D009360 7.6e-23 112.5 138 44.9
TPR.G19764 Trifolium pratense HOM05D007822 ORTHO05D009360 9.9e-23 112.1 123 48.0
Lalb_Chr23g0273141 Lupinus albus HOM05D007822 ORTHO05D009360 2.2e-22 110.9 103 53.4
Lalb_Chr23g0273151 Lupinus albus HOM05D007822 ORTHO05D009360 1.1e-21 108.6 78 62.8
TPR.G24719 Trifolium pratense HOM05D007822 ORTHO05D009360 1.9e-21 107.8 124 46.8
TPR.G5267 Trifolium pratense HOM05D007822 ORTHO05D009360 4.2e-21 106.7 348 24.4
TPR.G18088 Trifolium pratense HOM05D007822 ORTHO05D009360 1.6e-20 104.8 92 56.5
Medtr3g084700 Medicago truncatula HOM05D007822 ORTHO05D009360 6.7e-19 99.4 122 46.7
TPR.G8151 Trifolium pratense HOM05D007822 ORTHO05D009360 1.9e-18 97.8 153 37.9
Medtr6g034605 Medicago truncatula HOM05D007822 ORTHO05D009360 3.3e-18 97.1 107 45.8
TAR371G0827 Trochodendron aralioides HOM05D002420 ORTHO05D002422 2.2e-14 84.3 376 23.1
arahy.Tifrunner.gnm1.ann1.WW5NKJ Arachis hypogaea HOM05D007822 ORTHO05D009360 2.9e-14 84.0 72 59.7
Medtr8g080950 Medicago truncatula HOM05D007822 ORTHO05D009360 4.9e-14 83.2 181 30.4
Nn4g25094 Nelumbo nucifera HOM05D002420 ORTHO05D002422 1.9e-13 81.3 378 23.5
Sc19g0005840 Simmondsia chinensis HOM05D022095 ORTHO05D009360 1.0e-11 75.5 191 30.9
Sc06g0004600 Simmondsia chinensis HOM05D022095 ORTHO05D009360 1.8e-11 74.7 139 32.4
Ciclev10007128m.g Citrus clementina HOM05D003814 ORTHO05D004399 5.1e-11 73.2 396 23.5
Dinv19775 Davidia involucrata HOM05D000007 ORTHO05D000039 5.1e-11 73.2 386 21.0
Actinidia08199 Actinidia chinensis HOM05D007822 ORTHO05D009360 1.1e-10 72.0 61 52.5
Sc19g0006880 Simmondsia chinensis HOM05D015336 ORTHO05D009360 1.1e-10 72.0 123 35.8
TPR.G25296 Trifolium pratense HOM05D007822 ORTHO05D009360 2.5e-10 70.9 91 45.1
Medtr2g028160 Medicago truncatula HOM05D000007 ORTHO05D000017 4.3e-10 70.1 387 22.0
TAR624G1373 Trochodendron aralioides HOM05D003814 ORTHO05D004399 4.3e-10 70.1 343 21.6
RcHm_v2.0_Chr7g0203691 Rosa chinensis HOM05D000007 ORTHO05D000017 5.7e-10 69.7 326 24.8
PSO782G2286 Papaver somniferum HOM05D002420 ORTHO05D002422 1.3e-09 68.6 327 20.8
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 1.6e-09 68.2 86 41.9
Lalb_Chr16g0386521 Lupinus albus HOM05D002420 ORTHO05D002422 2.2e-09 67.8 319 22.6
Medtr2g028140 Medicago truncatula HOM05D000007 ORTHO05D000017 2.2e-09 67.8 379 20.6
TAR178G0001 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.8e-09 67.4 343 21.0
arahy.Tifrunner.gnm1.ann1.632YKH Arachis hypogaea HOM05D007822 ORTHO05D009360 8.2e-09 65.9 73 50.7
TAR375G1044 Trochodendron aralioides HOM05D007822 ORTHO05D009360 8.2e-09 65.9 93 37.6
TAR625G1137 Trochodendron aralioides HOM05D001729 ORTHO05D001155 8.2e-09 65.9 399 24.3
Sc10g0005610 Simmondsia chinensis HOM05D015336 ORTHO05D009360 1.1e-08 65.5 146 32.9
Sc16g0004890 Simmondsia chinensis HOM05D022095 ORTHO05D009360 1.1e-08 65.5 304 24.7
Prupe.4G237500 Prunus persica HOM05D000007 ORTHO05D005026 3.1e-08 63.9 358 22.6
PSO017G4273 Papaver somniferum HOM05D000789 ORTHO05D001155 4.1e-08 63.5 205 26.8
Ah.13g068830 Amaranthus hybridus HOM05D000007 ORTHO05D000017 5.3e-08 63.2 408 20.8
arahy.Tifrunner.gnm1.ann1.D2CQLD Arachis hypogaea HOM05D002420 ORTHO05D002422 6.9e-08 62.8 273 20.9
Rhsim10G0188800 Rhododendron simsii HOM05D002420 ORTHO05D002422 6.9e-08 62.8 216 24.5
Cc04_g08540 Coffea canephora HOM05D002420 ORTHO05D002422 9.0e-08 62.4 191 25.7
Rhsim01G0016800 Rhododendron simsii HOM05D000664 ORTHO05D000491 9.0e-08 62.4 225 24.9
Rhsim01G0017900 Rhododendron simsii HOM05D000664 ORTHO05D000491 9.0e-08 62.4 225 24.9
Aqoxy5G04107 Aquilegia oxysepala HOM05D006664 ORTHO05D008819 1.2e-07 62.0 321 21.2
CAN.G1245.17 Capsicum annuum HOM05D000007 ORTHO05D020324 1.2e-07 62.0 196 25.0
PSO333G0040 Papaver somniferum HOM05D008326 ORTHO05D001155 1.2e-07 62.0 393 20.9
Haze_19047 Corylus avellana HOM05D000664 ORTHO05D000491 1.5e-07 61.6 231 23.4
Lsat_1_v5_gn_5_31100 Lactuca sativa HOM05D001729 ORTHO05D001155 1.5e-07 61.6 345 22.9
Medtr2g425980 Medicago truncatula HOM05D000007 ORTHO05D000017 1.5e-07 61.6 377 21.5
Migut.F01808 Erythranthe guttata HOM05D000007 ORTHO05D000017 2.0e-07 61.2 359 23.7
AL1G44890 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 2.6e-07 60.8 321 23.4
Glyma.08G259900 Glycine max HOM05D002420 ORTHO05D002422 2.6e-07 60.8 158 28.5
Nitab4.5_0003040g0190 Nicotiana tabacum HOM05D000001 ORTHO05D010224 2.6e-07 60.8 226 23.5
Sc01g0006370 Simmondsia chinensis HOM05D022095 ORTHO05D009360 2.6e-07 60.8 139 29.5
Migut.F01618 Erythranthe guttata HOM05D000007 ORTHO05D000017 3.4e-07 60.5 196 25.5
PGSC0003DMG400027935 Solanum tuberosum HOM05D000007 ORTHO05D000017 3.4e-07 60.5 312 23.4
MD17G1251200 Malus domestica HOM05D000007 ORTHO05D000039 4.5e-07 60.1 393 23.2
AT1G30790 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 5.9e-07 59.7 314 24.5
Medtr2g028130 Medicago truncatula HOM05D000007 ORTHO05D000017 5.9e-07 59.7 318 23.0
BcaB07g34165 Brassica carinata HOM05D007162 ORTHO05D007631 7.7e-07 59.3 312 22.8
Medtr4g116330 Medicago truncatula HOM05D000007 ORTHO05D000017 7.7e-07 59.3 321 20.9
RcHm_v2.0_Chr5g0030151 Rosa chinensis HOM05D000007 ORTHO05D000017 1.0e-06 58.9 323 24.5
CAN.G929.25 Capsicum annuum HOM05D002420 ORTHO05D002422 1.3e-06 58.5 309 22.3
Oeu046586.1 Olea europaea HOM05D007162 ORTHO05D007631 1.3e-06 58.5 353 21.5
Atru.chr3.556 Acer truncatum HOM05D002420 ORTHO05D002422 2.2e-06 57.8 211 26.1
A09p03250 Brassica napus HOM05D000482 ORTHO05D000349 2.2e-06 57.8 324 22.2
BraA09t35963Z Brassica rapa HOM05D000482 ORTHO05D000349 2.2e-06 57.8 324 22.2
CAN.G358.108 Capsicum annuum HOM05D002420 ORTHO05D002422 2.2e-06 57.8 150 26.7
TPR.G5959 Trifolium pratense HOM05D002420 ORTHO05D002422 2.2e-06 57.8 126 27.8
CSS0048184 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000039 2.9e-06 57.4 396 19.9
Medtr2g426060 Medicago truncatula HOM05D000007 ORTHO05D000017 2.9e-06 57.4 370 20.0
PSO135G0788 Papaver somniferum HOM05D001729 ORTHO05D001155 2.9e-06 57.4 139 28.8
PSO675G2940 Papaver somniferum HOM05D000007 ORTHO05D000017 2.9e-06 57.4 360 22.2
Potri.001G462650 Populus trichocarpa HOM05D003814 ORTHO05D004399 2.9e-06 57.4 259 23.2
SGA_v2.0_scaffold34G13656 Striga asiatica HOM05D002420 ORTHO05D002422 2.9e-06 57.4 153 32.0
AT5G49610 Arabidopsis thaliana HOM05D007162 ORTHO05D007631 3.8e-06 57.0 316 21.2
Hma1.2p1_0169F.1_g074710 Hydrangea macrophylla HOM05D003814 ORTHO05D004399 3.8e-06 57.0 359 20.9
Nitab4.5_0000434g0050 Nicotiana tabacum HOM05D002420 ORTHO05D002422 3.8e-06 57.0 147 25.9
vmacro12417 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 3.8e-06 57.0 403 21.6
FAN07G0903 Fragaria x ananassa HOM05D000664 ORTHO05D000491 5.0e-06 56.6 226 25.7
Medtr3g070037 Medicago truncatula HOM05D007822 ORTHO05D009360 5.0e-06 56.6 46 50.0
Nitab4.5_0001827g0080 Nicotiana tabacum HOM05D002420 ORTHO05D002422 5.0e-06 56.6 147 26.5
PSO478G1976 Papaver somniferum HOM05D000007 ORTHO05D000017 5.0e-06 56.6 226 26.1
Medtr4g070550 Medicago truncatula HOM05D000007 ORTHO05D000017 6.5e-06 56.2 371 20.5
PSO384G0370 Papaver somniferum HOM05D001729 ORTHO05D001155 6.5e-06 56.2 147 26.5
Peaxi162Scf00231g00116 Petunia axillaris HOM05D000007 ORTHO05D000017 6.5e-06 56.2 255 24.3
AUR62009054 Chenopodium quinoa HOM05D000007 ORTHO05D000017 8.5e-06 55.8 312 22.4
Solyc01g008660.4 Solanum lycopersicum HOM05D000007 ORTHO05D000017 8.5e-06 55.8 259 23.9
Thecc.03G222100 Theobroma cacao HOM05D001729 ORTHO05D001155 8.5e-06 55.8 199 27.6


User provided reference genes

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