Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 6.3e-49 197.2 105 100.0
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 1.7e-30 136.0 91 81.3
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 1.9e-29 132.5 91 80.2
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 4.2e-29 131.3 91 79.1
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 3.6e-28 128.3 90 78.9
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 3.0e-27 125.2 91 76.9
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 1.5e-26 122.9 91 76.9
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 3.3e-26 121.7 91 73.6
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 3.3e-26 121.7 91 73.6
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 1.1e-24 116.7 90 73.3
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 9.1e-24 113.6 62 95.2
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 7.2e-21 104.0 90 58.9
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 6.8e-19 97.4 89 57.3
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 8.8e-19 97.1 89 57.3
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 5.7e-18 94.4 90 57.8
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 5.7e-18 94.4 91 56.0
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 2.2e-17 92.4 89 55.1
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 2.2e-17 92.4 93 57.0
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 2.8e-17 92.0 92 59.8
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 3.7e-17 91.7 91 57.1
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.8e-17 91.3 88 53.4
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 4.8e-17 91.3 88 53.4
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 6.3e-17 90.9 96 54.2
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 8.3e-17 90.5 88 56.8
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 8.3e-17 90.5 88 56.8
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.4e-16 89.7 92 58.7
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.8e-16 89.4 95 55.8
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 2.4e-16 89.0 96 53.1
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.1e-16 88.6 90 56.7
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 3.1e-16 88.6 90 57.8
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 7.0e-16 87.4 90 56.7
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.6e-15 86.3 86 55.8
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 1.6e-15 86.3 90 53.3
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 2.7e-15 85.5 89 55.1
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 4.5e-15 84.7 94 52.1
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 4.5e-15 84.7 91 54.9
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 1.0e-14 83.6 84 56.0
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 1.0e-14 83.6 90 50.0
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.3e-14 83.2 89 53.9
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 1.7e-14 82.8 89 53.9
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 2.2e-14 82.4 86 54.7
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.2e-14 82.4 90 53.3
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 2.9e-14 82.0 90 53.3
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 5.0e-14 81.3 89 51.7
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 5.0e-14 81.3 91 53.8
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 6.5e-14 80.9 93 53.8
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.1e-13 80.1 89 53.9
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 1.5e-13 79.7 61 73.8
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.5e-13 79.7 89 51.7
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 1.5e-13 79.7 90 50.0
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 1.9e-13 79.3 87 51.7
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.5e-13 79.0 89 53.9
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 7.2e-13 77.4 89 51.7
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.2e-12 76.6 98 49.0
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 1.6e-12 76.3 89 50.6
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 1.6e-12 76.3 89 50.6
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 1.6e-12 76.3 89 50.6
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 1.6e-12 76.3 90 46.7
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 2.1e-12 75.9 89 51.7
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.1e-12 75.9 85 54.1
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 8.0e-12 73.9 61 63.9
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 1.8e-11 72.8 89 47.2
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 2.3e-11 72.4 92 46.7
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 4.0e-11 71.6 90 46.7
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.2e-10 70.1 96 45.8
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 1.5e-10 69.7 91 45.1
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.0e-10 69.3 56 62.5
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 3.4e-10 68.6 44 72.7
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 4.4e-10 68.2 97 45.4
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 5.7e-10 67.8 43 72.1
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 7.5e-10 67.4 92 43.5
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.3e-09 66.6 95 43.2
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 1.7e-09 66.2 66 51.5
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 2.2e-09 65.9 56 55.4
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.8e-09 65.5 40 77.5
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.8e-09 65.5 40 77.5
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.7e-09 65.1 40 77.5
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 4.9e-09 64.7 91 40.7
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 4.9e-09 64.7 40 77.5
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 6.3e-09 64.3 48 60.4
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 6.3e-09 64.3 91 45.1
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 6.3e-09 64.3 47 61.7
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 8.3e-09 63.9 91 42.9
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-08 63.5 40 75.0
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 1.4e-08 63.2 57 50.9
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 1.4e-08 63.2 40 75.0
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.8e-08 62.8 40 75.0
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-08 62.8 40 75.0
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-08 62.8 39 76.9
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-08 62.8 39 76.9
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.8e-08 62.8 40 75.0
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 2.4e-08 62.4 49 59.2
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 2.4e-08 62.4 78 44.9
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 2.4e-08 62.4 43 65.1
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.4e-08 62.4 49 59.2
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 3.1e-08 62.0 95 41.1
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 3.1e-08 62.0 43 67.4
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 4.1e-08 61.6 46 60.9
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 4.1e-08 61.6 63 47.6
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.1e-08 61.6 46 58.7
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 5.4e-08 61.2 46 58.7
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 5.4e-08 61.2 46 58.7
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 5.4e-08 61.2 80 46.2
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.6e-07 59.7 43 67.4
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 2.0e-07 59.3 91 39.6
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.7e-07 58.9 48 62.5
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 7.7e-07 57.4 48 60.4
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 7.7e-07 57.4 48 60.4
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.7e-07 57.4 39 71.8
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 7.7e-07 57.4 41 58.5
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 1.0e-06 57.0 42 61.9
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 1.7e-06 56.2 66 45.5
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 2.3e-06 55.8 41 61.0
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 2.9e-06 55.5 44 56.8
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 6.6e-06 54.3 55 49.1
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 6.6e-06 54.3 55 49.1


User provided reference genes

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