Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 6.2e-167 590.9 332 100.0
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 3.0e-153 545.4 326 94.2
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 4.7e-143 511.5 333 85.9
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 6.2e-143 511.1 330 87.3
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 7.1e-131 471.1 334 74.9
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 4.3e-128 461.8 334 81.7
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 5.1e-121 438.3 332 73.8
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 1.9e-120 436.4 333 69.1
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.9e-120 436.4 333 69.7
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 9.7e-112 407.5 338 67.5
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 2.4e-110 402.9 333 71.5
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 8.5e-108 394.4 352 67.9
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 2.1e-106 389.8 338 63.6
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 3.0e-105 386.0 336 62.2
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 3.0e-105 386.0 333 64.3
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 2.5e-104 382.9 333 64.9
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.3e-103 380.6 338 60.4
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 8.2e-103 377.9 334 61.4
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 5.3e-102 375.2 336 59.8
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 6.9e-102 374.8 338 58.9
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 2.0e-101 373.2 331 60.4
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 2.6e-101 372.9 335 58.5
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 7.7e-101 371.3 334 58.1
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.0e-100 370.9 341 59.8
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.0e-100 370.9 339 61.9
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 3.8e-100 369.0 339 58.7
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 1.2e-98 364.0 338 57.7
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 4.7e-98 362.1 339 57.2
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 1.0e-97 360.9 338 57.4
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.4e-97 360.5 333 58.6
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 1.8e-97 360.1 332 59.0
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 2.3e-97 359.8 337 62.3
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 2.3e-97 359.8 338 65.4
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 3.9e-97 359.0 339 57.2
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 1.1e-96 357.5 334 55.1
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 1.1e-96 357.5 340 56.2
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.0e-96 356.7 340 56.5
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 3.3e-96 355.9 339 56.3
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 3.3e-96 355.9 338 56.8
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 3.3e-96 355.9 338 59.2
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 4.4e-96 355.5 338 58.6
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 5.7e-96 355.1 337 57.0
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 5.7e-96 355.1 278 63.7
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.3e-95 354.0 335 58.2
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 1.7e-95 353.6 337 57.0
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 2.2e-95 353.2 337 56.4
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 4.8e-95 352.1 340 55.6
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 8.2e-95 351.3 337 56.7
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 1.4e-94 350.5 338 60.9
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.4e-94 350.5 343 60.1
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 1.4e-94 350.5 340 55.6
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.4e-94 350.5 337 59.6
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.8e-94 350.1 337 60.5
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.1e-94 349.0 276 63.0
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 4.1e-94 349.0 337 60.2
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 6.9e-94 348.2 391 54.7
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 2.0e-93 346.7 337 55.2
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.4e-93 345.9 337 59.9
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 3.4e-93 345.9 333 56.5
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 4.5e-93 345.5 343 55.4
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.3e-92 344.0 343 60.1
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 2.9e-92 342.8 340 55.3
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 5.0e-92 342.0 337 56.7
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 6.5e-92 341.7 340 55.9
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 2.1e-90 336.7 330 56.7
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.7e-90 336.3 336 53.6
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 3.6e-90 335.9 341 54.8
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.6e-90 335.9 337 53.7
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 4.7e-90 335.5 334 53.6
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 1.0e-89 334.3 335 54.6
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.5e-88 330.5 342 52.6
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 2.6e-88 329.7 274 62.0
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 3.3e-88 329.3 336 52.7
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.3e-88 329.3 336 59.2
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 5.7e-88 328.6 335 52.8
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 7.4e-88 328.2 296 60.1
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 7.4e-88 328.2 285 60.7
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 9.7e-88 327.8 334 53.3
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.2e-87 326.6 332 53.6
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 2.8e-87 326.2 324 55.6
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.8e-87 325.5 335 52.5
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.8e-87 325.5 335 52.2
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.1e-86 324.3 324 55.6
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 1.8e-86 323.6 357 53.8
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 3.1e-86 322.8 342 51.2
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 7.0e-86 321.6 331 52.9
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 7.0e-86 321.6 335 53.4
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 9.1e-86 321.2 338 52.1
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.2e-85 320.9 277 59.9
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.0e-85 320.1 338 51.8
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 5.9e-85 318.5 327 51.4
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.0e-84 317.8 332 57.2
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 1.0e-84 317.8 278 57.6
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 2.2e-84 316.6 240 66.7
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.5e-83 313.2 344 50.6
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 3.2e-83 312.8 273 58.2
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 3.6e-82 309.3 341 52.5
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 1.4e-81 307.4 337 49.0
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 8.8e-81 304.7 343 51.6
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.6e-80 303.1 339 51.0
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.6e-80 303.1 339 51.0
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.6e-80 303.1 339 51.0
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 7.0e-78 295.0 333 51.7
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.6e-77 293.9 342 48.0
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 2.7e-77 293.1 332 51.8
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 2.7e-77 293.1 337 49.3
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 4.5e-77 292.4 344 48.5
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 4.5e-77 292.4 310 53.2
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 5.9e-77 292.0 378 48.7
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 5.9e-77 292.0 334 48.2
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 2.2e-76 290.0 342 47.7
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 3.8e-76 289.3 219 67.1
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 5.0e-76 288.9 336 50.6
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 5.0e-76 288.9 342 47.4
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 1.9e-75 287.0 339 51.3
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 4.2e-75 285.8 335 51.9
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 5.5e-75 285.4 344 48.8
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 5.5e-75 285.4 344 48.8
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 1.2e-74 284.3 247 59.9
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 4.7e-74 282.3 331 48.3
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 3.0e-73 279.6 323 48.9
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 5.2e-73 278.9 336 51.5
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 8.8e-73 278.1 338 47.9
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.0e-72 276.9 265 55.5
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 2.6e-72 276.6 254 59.1
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 4.4e-72 275.8 347 51.3
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 5.7e-72 275.4 343 51.6
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.7e-71 273.9 340 50.9
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.8e-70 270.4 341 54.0
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 1.9e-67 260.4 376 47.6
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 1.9e-67 260.4 338 49.1
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 7.2e-67 258.5 317 50.2
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 2.8e-66 256.5 233 60.9
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 4.7e-66 255.8 162 77.2
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.4e-65 254.2 164 74.4
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 1.3e-63 247.7 283 50.2
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 7.0e-62 241.9 188 65.4
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.9e-59 233.8 261 50.6
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 2.5e-59 233.4 266 47.7
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 1.4e-54 217.6 310 45.8
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.0e-53 213.8 270 47.0
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 6.0e-53 212.2 171 63.2
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 3.9e-52 209.5 269 46.1
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 5.0e-52 209.1 233 47.2
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 8.6e-52 208.4 218 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 4.0e-49 199.5 273 44.0
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 9.8e-48 194.9 207 62.8
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.1e-46 191.4 207 62.3
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 7.8e-45 185.3 276 40.9
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.9e-44 183.0 149 67.8
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 5.0e-44 182.6 207 55.6
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.5e-40 171.0 136 58.8
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.9e-35 154.1 148 50.0
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 3.1e-33 146.7 142 57.0
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 6.8e-33 145.6 130 54.6
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 8.4e-31 138.7 122 61.5
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.1e-30 138.3 117 57.3
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 6.0e-29 132.5 144 55.6
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 6.0e-29 132.5 149 49.7
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 9.6e-27 125.2 105 56.2
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.8e-25 120.9 178 45.5
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 4.0e-25 119.8 148 48.6
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 2.7e-21 107.1 98 57.1
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 3.6e-18 96.7 219 32.4
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.6e-13 81.3 90 43.3
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 5.1e-12 76.3 61 65.6
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.5e-11 74.7 52 65.4
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.9e-11 74.3 152 34.2
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.4e-09 68.2 55 58.2
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 2.4e-09 67.4 230 27.0
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 7.6e-08 62.4 35 80.0


User provided reference genes

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