Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.4e-240 835.9 419 100.0
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 3.3e-218 761.5 427 91.1
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 1.0e-214 750.0 428 89.7
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 1.6e-188 662.9 432 80.3
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 4.4e-178 628.2 427 78.2
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 1.8e-176 622.9 426 77.7
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 5.9e-175 617.8 432 76.6
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 2.3e-174 615.9 435 75.2
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 3.4e-170 602.1 401 77.3
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 6.2e-156 554.7 438 70.1
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 5.2e-155 551.6 460 66.5
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 3.4e-154 548.9 433 69.7
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 5.8e-154 548.1 428 68.5
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 2.2e-153 546.2 423 68.8
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 8.3e-153 544.3 429 69.9
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.1e-152 543.9 422 70.1
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 5.4e-152 541.6 428 68.9
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 3.0e-150 535.8 464 64.7
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 6.6e-150 534.6 429 69.0
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 1.5e-149 533.5 395 71.6
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 1.9e-149 533.1 442 64.3
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 3.3e-149 532.3 422 67.1
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 7.3e-149 531.2 441 65.8
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 1.6e-148 530.0 436 66.1
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.6e-148 530.0 435 66.4
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 1.6e-148 530.0 436 66.1
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.8e-148 529.3 436 66.1
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 3.6e-148 528.9 406 67.7
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 6.2e-148 528.1 436 66.7
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.0e-147 525.4 436 65.8
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 6.8e-147 524.6 436 67.0
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 4.4e-146 521.9 433 66.5
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 9.9e-146 520.8 435 63.9
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 2.9e-145 519.2 456 62.5
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 8.4e-145 517.7 425 66.8
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 7.1e-144 514.6 432 62.7
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.6e-143 513.5 436 62.6
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 2.1e-143 513.1 432 65.3
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 3.9e-142 508.8 429 63.9
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 5.1e-142 508.4 431 63.3
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 6.6e-142 508.1 426 65.5
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.1e-141 507.3 423 63.8
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.9e-141 506.5 394 69.3
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 9.6e-141 504.2 428 65.7
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 2.1e-140 503.1 396 66.9
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 2.1e-140 503.1 435 64.4
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 2.8e-140 502.7 427 63.7
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 2.8e-140 502.7 427 63.9
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.8e-139 500.0 429 62.0
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 2.4e-139 499.6 394 66.2
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 3.1e-139 499.2 426 62.2
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 4.0e-139 498.8 425 62.1
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 9.0e-139 497.7 441 62.8
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 9.9e-138 494.2 392 67.1
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.3e-137 493.8 393 65.6
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 2.9e-137 492.7 408 64.7
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 1.1e-136 490.7 444 60.6
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.4e-136 489.6 436 62.6
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 3.2e-136 489.2 434 61.8
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.6e-135 486.9 433 62.6
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 2.1e-135 486.5 438 61.0
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.1e-135 486.5 436 61.0
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 3.5e-135 485.7 391 67.0
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 7.8e-135 484.6 438 61.0
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.0e-134 484.2 426 62.9
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.3e-134 483.8 438 60.7
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 8.7e-134 481.1 438 60.7
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.5e-133 480.3 395 65.3
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 2.5e-133 479.6 392 66.1
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 3.3e-133 479.2 427 62.1
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 4.3e-133 478.8 430 62.3
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 5.6e-133 478.4 433 60.5
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 2.1e-132 476.5 430 60.9
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 2.1e-132 476.5 390 65.9
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 2.1e-132 476.5 392 65.3
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 4.8e-132 475.3 391 65.7
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 4.8e-132 475.3 436 59.6
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 6.2e-132 474.9 429 61.1
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 3.1e-131 472.6 390 65.4
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 5.3e-131 471.9 410 63.4
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 1.5e-130 470.3 390 65.4
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 4.5e-130 468.8 397 63.5
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 5.8e-130 468.4 390 65.1
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 5.8e-130 468.4 390 65.1
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.2e-129 466.5 409 63.8
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.2e-129 466.5 392 64.5
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 6.4e-129 464.9 391 63.9
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 1.1e-128 464.2 422 62.3
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 1.4e-128 463.8 432 60.4
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 4.2e-128 462.2 437 58.4
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.2e-127 460.7 392 64.0
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 2.7e-127 459.5 435 60.0
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 4.6e-127 458.8 400 61.2
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 2.3e-126 456.4 406 61.8
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 3.9e-126 455.7 438 59.4
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 1.9e-125 453.4 432 58.3
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 2.5e-125 453.0 432 58.3
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 4.8e-124 448.7 361 65.4
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 9.0e-123 444.5 390 61.8
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 2.6e-122 443.0 428 57.5
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.4e-122 442.6 430 58.1
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 3.4e-122 442.6 436 57.8
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 6.4e-121 438.3 436 58.3
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 6.4e-121 438.3 436 57.8
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 6.4e-121 438.3 238 91.6
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 1.4e-120 437.2 438 56.2
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 4.2e-120 435.6 433 57.7
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 2.1e-119 433.3 427 56.7
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 6.0e-119 431.8 436 56.9
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 6.7e-118 428.3 431 57.3
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 6.2e-116 421.8 383 59.8
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 6.2e-116 421.8 430 58.1
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.5e-114 417.2 383 59.5
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.5e-112 409.8 396 57.6
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 3.3e-109 399.4 459 51.6
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 3.3e-109 399.4 430 51.9
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 5.7e-109 398.7 430 51.6
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 5.7e-109 398.7 386 58.8
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 9.7e-109 397.9 430 52.1
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 4.1e-107 392.5 387 55.8
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 4.5e-106 389.0 325 62.8
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.9e-104 383.6 394 53.0
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 3.1e-99 366.3 309 64.4
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.4e-83 314.3 343 53.1
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 5.5e-80 302.4 195 83.1
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.5e-72 277.7 290 49.7
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 8.3e-68 261.9 237 62.4
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 9.1e-67 258.5 400 40.0
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 4.5e-58 229.6 169 69.8
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 6.6e-57 225.7 228 52.2
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.6e-56 222.6 195 64.6
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 8.0e-55 218.8 223 52.0
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 9.8e-53 211.8 190 62.1
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 1.7e-52 211.1 203 59.1
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.9e-51 207.6 203 58.1
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 7.5e-45 185.7 431 33.4
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.3e-41 174.9 309 35.3
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 8.1e-23 112.5 114 58.8
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.4e-14 85.1 71 63.4
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.1e-14 84.0 75 56.0
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 2.7e-10 70.9 161 33.5
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 1.1e-06 58.9 137 34.3
C05p10420 Brassica napus HOM05D005312 ORTHO05D006459 3.1e-06 57.4 36 63.9


User provided reference genes

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