Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 6.7e-168 594.0 306 100.0
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 6.5e-163 577.4 307 97.7
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 4.1e-157 558.1 307 92.8
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 5.5e-154 547.7 307 91.2
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 1.5e-143 513.1 307 86.6
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 2.2e-139 499.2 310 84.2
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 6.3e-134 481.1 309 79.6
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 8.3e-134 480.7 309 79.6
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.8e-133 479.6 309 79.3
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 5.4e-133 478.0 307 81.4
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 1.2e-132 476.9 309 79.0
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 7.7e-132 474.2 309 78.0
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 3.8e-131 471.9 309 78.6
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 2.5e-130 469.2 308 76.9
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 3.3e-130 468.8 309 77.7
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 1.2e-129 466.8 309 77.7
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 1.6e-129 466.5 309 76.7
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 8.0e-129 464.2 307 78.5
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 1.4e-128 463.4 309 75.7
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 3.0e-128 462.2 310 76.5
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 3.4e-127 458.8 314 77.4
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.3e-126 456.8 309 76.4
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 4.9e-126 454.9 309 75.4
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 3.1e-125 452.2 309 74.1
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 7.0e-125 451.1 307 76.9
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 1.2e-124 450.3 305 78.0
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.0e-124 449.5 305 77.7
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 2.7e-124 449.1 308 74.4
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 3.5e-124 448.7 313 75.7
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 3.5e-124 448.7 291 77.0
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 4.5e-124 448.4 303 75.6
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 5.9e-124 448.0 309 73.5
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 1.3e-123 446.8 309 74.1
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.7e-123 446.4 318 74.2
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.9e-123 445.7 309 74.8
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 3.8e-123 445.3 304 75.7
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 3.8e-123 445.3 310 75.5
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 3.8e-123 445.3 296 76.0
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 3.8e-123 445.3 312 74.4
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 1.1e-122 443.7 312 73.7
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 5.6e-122 441.4 299 76.3
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.6e-121 439.9 289 76.5
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 3.6e-121 438.7 310 73.9
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 6.1e-121 438.0 311 72.0
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.1e-121 438.0 289 76.1
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 8.0e-121 437.6 304 73.4
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 1.0e-120 437.2 318 73.9
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.3e-120 436.0 299 74.2
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 4.0e-120 435.3 309 72.8
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 5.2e-120 434.9 303 73.6
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 6.8e-120 434.5 299 72.6
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 6.8e-120 434.5 299 72.6
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 1.2e-119 433.7 310 72.9
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 5.8e-119 431.4 301 73.4
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 9.8e-119 430.6 309 70.9
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.3e-118 430.3 299 71.9
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.3e-118 430.3 301 73.1
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 1.7e-118 429.9 307 71.3
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 4.9e-118 428.3 313 72.5
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.4e-117 426.8 312 71.8
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.9e-117 426.4 312 71.8
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 2.4e-117 426.0 303 71.9
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 2.4e-117 426.0 350 65.4
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 2.4e-117 426.0 344 66.3
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 4.1e-117 425.2 303 71.6
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 5.4e-117 424.9 294 72.8
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 7.0e-117 424.5 303 71.9
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 7.0e-117 424.5 299 71.6
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 1.6e-116 423.3 303 71.6
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 1.6e-116 423.3 301 71.1
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 2.0e-116 422.9 346 65.6
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 2.7e-116 422.5 299 70.2
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 4.6e-116 421.8 299 71.2
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 4.6e-116 421.8 313 70.3
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 6.0e-116 421.4 309 70.9
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.0e-115 420.6 309 69.9
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 1.0e-115 420.6 312 71.5
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 1.0e-115 420.6 312 72.8
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 3.0e-115 419.1 269 76.6
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 3.9e-115 418.7 296 72.3
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 3.9e-115 418.7 303 70.6
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 3.9e-115 418.7 303 70.3
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 3.9e-115 418.7 305 69.8
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 5.0e-115 418.3 303 71.6
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 1.1e-114 417.2 333 66.1
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 1.1e-114 417.2 285 72.6
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 1.1e-114 417.2 303 70.3
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.1e-114 417.2 298 70.8
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 1.1e-114 417.2 303 70.3
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 1.9e-114 416.4 309 68.9
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 3.3e-114 415.6 297 70.4
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 4.3e-114 415.2 311 68.8
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 5.6e-114 414.8 284 73.6
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 5.6e-114 414.8 298 70.5
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 9.5e-114 414.1 315 69.5
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.6e-113 413.3 384 59.6
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 1.6e-113 413.3 308 69.5
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 2.8e-113 412.5 307 68.4
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 2.8e-113 412.5 306 71.6
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 8.0e-113 411.0 298 69.1
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 3.1e-112 409.1 338 64.2
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 1.2e-111 407.1 303 70.3
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 2.6e-111 406.0 304 70.1
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.7e-110 403.3 304 70.1
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 3.7e-110 402.1 296 70.3
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 6.4e-110 401.4 275 72.4
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 1.4e-109 400.2 257 78.6
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.4e-109 400.2 294 70.4
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 2.4e-109 399.4 313 67.1
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 3.2e-109 399.1 301 69.1
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 5.4e-109 398.3 298 69.1
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.2e-108 397.1 270 74.8
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 6.0e-108 394.8 311 66.9
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 3.9e-107 392.1 265 72.1
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 1.9e-106 389.8 304 66.8
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.2e-105 387.1 291 68.0
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 3.4e-103 379.0 259 75.3
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 3.4e-103 379.0 306 66.3
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 3.4e-103 379.0 315 65.1
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 7.5e-103 377.9 298 65.4
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 1.4e-101 373.6 309 62.5
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 1.0e-99 367.5 315 62.9
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.7e-99 366.7 313 61.3
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 3.9e-99 365.5 295 64.1
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.6e-99 364.4 284 63.7
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 5.6e-98 361.7 305 62.3
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 1.4e-96 357.1 229 75.5
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.9e-96 354.4 283 61.8
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 4.3e-90 335.5 275 58.9
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.3e-82 309.3 230 71.3
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 7.3e-82 308.1 294 54.8
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 1.3e-81 307.4 283 54.8
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 1.6e-81 307.0 294 56.1
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 8.1e-81 304.7 265 59.2
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 1.4e-80 303.9 277 56.3
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 1.5e-79 300.4 193 80.8
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 5.8e-79 298.5 291 54.0
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 1.3e-78 297.4 290 53.1
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 7.1e-77 291.6 201 75.6
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.0e-75 287.7 279 52.7
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.3e-75 287.3 298 56.0
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 7.4e-74 281.6 294 52.4
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 1.1e-72 277.7 276 51.4
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 2.4e-72 276.6 276 51.1
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 1.1e-66 257.7 224 58.0
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.3e-65 254.2 217 66.4
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 5.3e-64 248.8 231 55.4
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 1.1e-56 224.6 326 46.9
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 1.0e-54 218.0 217 53.0
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.9e-54 216.5 187 63.6
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 8.5e-54 214.9 148 68.9
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 5.5e-53 212.2 210 52.9
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 7.2e-53 211.8 183 62.3
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 3.3e-50 203.0 149 72.5
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 3.4e-47 193.0 290 35.5
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.7e-41 174.1 152 62.5
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 3.9e-35 152.9 286 35.3
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 7.7e-31 138.7 108 68.5
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 4.0e-27 126.3 312 28.5
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 2.0e-26 124.0 114 55.3
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 2.2e-25 120.6 214 32.7
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 2.4e-24 117.1 76 80.3
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.3e-22 111.3 124 51.6
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 2.7e-20 103.6 286 30.8
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 6.1e-20 102.4 287 26.5
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 5.2e-11 72.8 58 56.9
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 2.9e-09 67.0 44 70.5
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 3.2e-08 63.5 184 34.8


User provided reference genes

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