Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 3.6e-88 328.2 162 100.0
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 1.3e-64 250.0 162 82.7
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 3.4e-54 215.3 119 93.3
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 2.2e-45 186.0 124 78.2
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.1e-44 183.7 120 80.0
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 1.1e-44 183.7 120 80.0
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 1.6e-43 179.9 120 80.0
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 3.6e-43 178.7 120 80.0
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 5.1e-42 174.9 124 74.2
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 9.7e-41 170.6 122 73.0
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 3.7e-40 168.7 125 76.0
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 3.7e-40 168.7 119 76.5
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 3.7e-40 168.7 122 72.1
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 1.1e-39 167.2 147 62.6
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 2.4e-39 166.0 122 70.5
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 3.4e-38 162.2 118 73.7
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 7.7e-38 161.0 124 70.2
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 1.3e-37 160.2 118 73.7
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 3.8e-37 158.7 118 73.7
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 2.7e-35 152.5 120 67.5
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 6.1e-35 151.4 116 68.1
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 1.1e-33 147.1 121 66.9
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 5.7e-33 144.8 122 65.6
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 4.1e-31 138.7 122 59.8
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 2.2e-29 132.9 122 59.0
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 6.5e-29 131.3 125 60.0
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 7.2e-28 127.9 125 57.6
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 1.1e-25 120.6 126 54.8
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 1.3e-24 117.1 141 51.8
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 6.5e-21 104.8 125 50.4
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 2.7e-19 99.4 126 49.2
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 8.0e-19 97.8 123 49.6
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 3.4e-17 92.4 122 46.7
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 2.2e-16 89.7 126 42.1
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 2.8e-16 89.4 127 48.0
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 2.8e-16 89.4 126 40.5
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 3.7e-16 89.0 107 53.3
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 4.8e-16 88.6 133 43.6
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 4.8e-16 88.6 124 45.2
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 4.8e-16 88.6 121 44.6
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 8.3e-16 87.8 119 46.2
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 8.3e-16 87.8 121 46.3
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 8.3e-16 87.8 117 48.7
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 1.1e-15 87.4 125 42.4
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 1.1e-15 87.4 122 46.7
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.8e-15 86.7 119 46.2
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.4e-15 86.3 119 46.2
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 3.1e-15 85.9 132 43.9
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 4.1e-15 85.5 119 46.2
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 9.1e-15 84.3 127 42.5
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 9.1e-15 84.3 125 41.6
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 9.1e-15 84.3 124 42.7
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-14 84.0 119 45.4
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-14 84.0 119 45.4
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.2e-14 84.0 119 45.4
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-14 83.6 119 43.7
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 2.0e-14 83.2 119 45.4
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 2.0e-14 83.2 119 45.4
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.5e-14 82.4 130 40.8
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 4.5e-14 82.0 120 45.0
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 4.5e-14 82.0 119 43.7
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 4.5e-14 82.0 119 44.5
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 4.5e-14 82.0 119 44.5
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 4.5e-14 82.0 119 43.7
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.5e-14 82.0 119 42.9
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.9e-14 81.6 131 41.2
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 5.9e-14 81.6 131 41.2
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 7.7e-14 81.3 119 43.7
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 7.7e-14 81.3 120 45.0
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 7.7e-14 81.3 120 45.0
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 7.7e-14 81.3 120 45.0
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.0e-13 80.9 133 39.8
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.0e-13 80.9 123 44.7
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.3e-13 80.5 119 43.7
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-13 80.5 135 41.5
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-13 80.5 120 45.0
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 1.3e-13 80.5 120 45.0
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.3e-13 80.5 120 44.2
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.3e-13 80.5 135 41.5
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.3e-13 80.5 120 45.0
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.7e-13 80.1 122 44.3
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 1.7e-13 80.1 120 45.0
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 1.7e-13 80.1 127 43.3
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 2.2e-13 79.7 119 44.5
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 2.2e-13 79.7 119 42.9
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.8e-13 79.0 122 40.2
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.0e-13 78.6 121 40.5
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 5.0e-13 78.6 121 42.1
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.0e-13 78.6 131 40.5
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 8.5e-13 77.8 121 42.1
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 8.5e-13 77.8 132 40.2
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 1.1e-12 77.4 111 42.3
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.5e-12 77.0 125 40.0
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 1.9e-12 76.6 137 40.9
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 2.5e-12 76.3 121 41.3
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 3.2e-12 75.9 120 42.5
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.2e-12 75.9 121 42.1
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.2e-12 75.5 136 40.4
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 5.5e-12 75.1 129 40.3
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 9.5e-12 74.3 136 41.2
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 9.5e-12 74.3 125 40.0
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 2.1e-11 73.2 130 39.2
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 2.1e-11 73.2 130 39.2
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 2.1e-11 73.2 130 39.2
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.1e-11 73.2 121 39.7
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 4.7e-11 72.0 136 41.2
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.1e-11 71.6 129 38.0
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 8.0e-11 71.2 136 36.8
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 8.0e-11 71.2 141 36.2
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 8.0e-11 71.2 110 42.7
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 8.0e-11 71.2 55 58.2
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 8.0e-11 71.2 60 58.3
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.8e-10 70.1 132 37.9
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 2.3e-10 69.7 126 42.1
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.3e-10 69.7 127 37.8
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 2.3e-10 69.7 122 42.6
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 3.0e-10 69.3 54 64.8
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 3.0e-10 69.3 95 42.1
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 3.0e-10 69.3 127 42.5
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 4.0e-10 68.9 110 42.7
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 5.2e-10 68.6 57 57.9
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 6.8e-10 68.2 130 36.9
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 8.8e-10 67.8 121 42.1
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 1.5e-09 67.0 130 39.2
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 2.0e-09 66.6 124 38.7
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 2.0e-09 66.6 124 38.7
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.6e-09 66.2 127 35.4
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 3.4e-09 65.9 49 59.2
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 3.4e-09 65.9 118 40.7
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 7.5e-09 64.7 55 54.5
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-08 63.9 129 38.0
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-08 63.9 129 38.0
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 2.2e-08 63.2 135 33.3
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 2.2e-08 63.2 47 57.4
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 2.2e-08 63.2 127 39.4
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 2.2e-08 63.2 48 56.2
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 4.9e-08 62.0 56 53.6
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 4.9e-08 62.0 56 53.6
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 4.9e-08 62.0 56 53.6
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 4.9e-08 62.0 51 62.7
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 6.3e-08 61.6 56 53.6
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 6.3e-08 61.6 117 36.8
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 8.3e-08 61.2 124 40.3
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 8.3e-08 61.2 99 45.5
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.4e-07 60.5 34 70.6
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.4e-07 60.5 115 35.7
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 3.1e-07 59.3 159 28.9
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 4.1e-07 58.9 124 31.5
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 4.1e-07 58.9 113 36.3
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 5.4e-07 58.5 109 33.9
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 5.4e-07 58.5 114 34.2
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 5.4e-07 58.5 114 33.3
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 7.0e-07 58.2 36 63.9
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 7.0e-07 58.2 53 50.9
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 7.0e-07 58.2 116 31.9
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 9.2e-07 57.8 47 57.4
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 9.2e-07 57.8 117 32.5
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 1.2e-06 57.4 117 35.0
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.2e-06 57.4 116 35.3
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 1.6e-06 57.0 108 44.4
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 2.0e-06 56.6 117 35.0
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 3.5e-06 55.8 117 37.6
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 3.5e-06 55.8 117 37.6
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 3.5e-06 55.8 117 37.6
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.5e-06 55.8 112 33.9
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 4.5e-06 55.5 60 40.0
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 4.5e-06 55.5 117 39.3
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 4.5e-06 55.5 114 33.3
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 5.9e-06 55.1 121 33.1


User provided reference genes

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