Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 2.7e-120 435.3 207 100.0
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 2.4e-116 422.2 207 96.6
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 4.2e-113 411.4 207 92.3
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 1.4e-108 396.4 211 90.0
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 7.1e-105 384.0 209 87.6
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 7.9e-104 380.6 207 87.0
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 1.5e-99 366.3 211 82.5
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 1.6e-96 356.3 209 82.8
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 7.9e-96 354.0 207 80.2
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 1.0e-95 353.6 199 81.4
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 8.7e-95 350.5 198 82.8
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 3.3e-94 348.6 205 80.5
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 3.3e-94 348.6 205 80.5
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 1.3e-93 346.7 202 79.7
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 3.7e-93 345.1 197 81.2
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 4.8e-93 344.7 198 81.3
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 4.8e-93 344.7 198 81.3
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 1.4e-92 343.2 205 80.5
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 2.4e-92 342.4 197 82.2
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 3.1e-92 342.0 198 80.3
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 4.1e-92 341.7 200 80.5
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 9.0e-92 340.5 207 78.7
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.2e-91 340.1 207 78.3
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 1.5e-91 339.7 200 79.5
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.5e-91 339.7 200 80.5
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 3.4e-91 338.6 200 80.5
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 4.5e-91 338.2 202 79.7
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 1.0e-90 337.0 202 79.7
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 1.3e-90 336.7 201 79.1
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 1.7e-90 336.3 200 78.5
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 1.7e-90 336.3 202 79.7
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 2.9e-90 335.5 201 77.1
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 5.0e-90 334.7 208 76.9
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 6.5e-90 334.3 199 80.4
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 8.5e-90 334.0 199 78.9
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 1.4e-89 333.2 198 79.8
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 1.4e-89 333.2 199 78.9
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 2.5e-89 332.4 198 79.3
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 2.5e-89 332.4 198 79.3
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 4.2e-89 331.6 202 79.2
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 4.2e-89 331.6 204 77.0
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 4.2e-89 331.6 207 75.8
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 5.5e-89 331.3 198 79.8
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 1.2e-88 330.1 202 76.7
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 1.2e-88 330.1 202 77.2
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 1.2e-88 330.1 203 77.8
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 1.6e-88 329.7 202 77.7
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 1.6e-88 329.7 202 77.7
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 2.7e-88 328.9 202 76.7
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 2.7e-88 328.9 200 78.0
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 3.6e-88 328.6 202 75.7
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 4.6e-88 328.2 204 77.9
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 4.6e-88 328.2 202 77.2
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 6.1e-88 327.8 200 78.0
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 7.9e-88 327.4 202 76.2
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 7.9e-88 327.4 202 75.7
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.0e-87 327.0 212 75.9
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 1.3e-87 326.6 199 79.4
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 2.3e-87 325.9 197 77.7
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 3.0e-87 325.5 204 75.0
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 3.0e-87 325.5 205 76.1
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 3.9e-87 325.1 201 77.1
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 3.9e-87 325.1 202 75.7
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 3.9e-87 325.1 205 76.1
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 5.1e-87 324.7 202 76.2
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 5.1e-87 324.7 204 76.5
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 5.1e-87 324.7 207 72.0
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 6.7e-87 324.3 200 77.0
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 8.8e-87 323.9 200 78.5
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 1.9e-86 322.8 200 78.0
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 1.9e-86 322.8 201 77.1
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 3.3e-86 322.0 203 76.8
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 4.3e-86 321.6 205 76.1
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 5.7e-86 321.2 200 77.0
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 7.4e-86 320.9 200 76.5
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 9.7e-86 320.5 200 76.0
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 1.3e-85 320.1 205 75.1
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 2.2e-85 319.3 201 75.6
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 2.2e-85 319.3 198 77.3
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.8e-85 318.9 200 76.0
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 6.3e-85 317.8 201 76.1
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 8.2e-85 317.4 198 76.8
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 8.2e-85 317.4 198 76.3
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 1.1e-84 317.0 202 75.7
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 2.4e-84 315.8 201 75.1
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 5.3e-84 314.7 202 74.8
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 5.3e-84 314.7 200 74.5
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 5.3e-84 314.7 198 76.8
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 6.9e-84 314.3 231 65.4
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 9.1e-84 313.9 200 74.5
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 3.4e-83 312.0 204 73.0
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 7.7e-83 310.8 205 72.2
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 1.3e-82 310.1 200 74.0
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 1.3e-82 310.1 207 72.9
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 1.4e-81 306.6 195 74.9
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 4.4e-78 295.0 200 71.0
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 7.4e-78 294.3 200 71.0
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.7e-77 293.1 200 70.5
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.8e-76 289.7 185 75.1
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 6.1e-72 274.6 200 69.0
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 1.0e-71 273.9 173 75.7
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 1.8e-71 273.1 198 69.7
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 3.3e-70 268.9 197 65.5
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 3.5e-67 258.8 368 41.8
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 1.0e-66 257.3 201 60.2
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 5.0e-66 255.0 166 72.9
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 3.3e-62 242.3 141 80.1
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 4.8e-61 238.4 198 58.1
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 1.8e-60 236.5 160 68.8
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 4.1e-60 235.3 202 58.9
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.0e-59 233.0 201 58.2
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.8e-58 228.8 201 57.2
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 1.1e-57 227.3 195 57.4
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 4.7e-56 221.9 197 56.3
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 1.0e-55 220.7 124 80.6
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 3.0e-55 219.2 206 53.9
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 1.5e-54 216.9 127 80.3
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 1.3e-53 213.8 143 72.0
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 6.1e-48 194.9 145 67.6
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.8e-47 193.4 145 67.6
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 1.1e-44 184.1 121 71.9
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 3.1e-44 182.6 121 71.9
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 4.3e-41 172.2 160 56.2
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 8.0e-40 167.9 99 76.8
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 1.5e-38 163.7 158 55.1
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 4.4e-30 135.6 93 69.9
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 7.0e-28 128.3 201 39.3
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 1.5e-25 120.6 209 39.7
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 3.1e-23 112.8 100 57.0
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 4.0e-23 112.5 97 62.9
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 5.8e-22 108.6 77 67.5
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 6.0e-19 98.6 60 73.3
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 1.3e-18 97.4 77 66.2
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 4.9e-13 79.0 36 100.0
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 4.2e-12 75.9 42 85.7
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 2.1e-08 63.5 37 81.1
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 6.2e-08 62.0 35 80.0
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 3.4e-06 56.2 40 65.0
MBI11_g04264_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D000004 7.6e-06 55.1 29 86.2


User provided reference genes

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