Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 0.0e+00 1282.3 671 100.0
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 0.0e+00 1140.2 641 90.6
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 0.0e+00 1122.1 671 86.9
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 0.0e+00 1109.7 673 87.7
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 2.2e-309 1065.1 638 83.7
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 4.0e-298 1027.7 671 78.2
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 2.9e-296 1021.5 635 81.6
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 4.9e-296 1020.8 639 80.8
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 1.6e-294 1015.8 636 79.7
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 5.9e-294 1013.8 638 79.8
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 4.3e-292 1007.7 635 79.7
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 9.5e-292 1006.5 636 78.9
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 6.9e-258 894.0 643 70.6
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 4.9e-256 887.9 642 68.8
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 4.2e-255 884.8 642 69.0
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 9.3e-255 883.6 643 69.8
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 2.8e-251 872.1 643 69.1
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 3.7e-251 871.7 640 68.3
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 4.0e-250 868.2 640 68.0
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 7.6e-249 864.0 640 67.0
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 1.7e-248 862.8 643 67.7
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 5.5e-247 857.8 640 66.7
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.8e-245 852.8 640 66.7
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 2.3e-245 852.4 640 66.7
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 3.0e-245 852.0 640 65.8
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 8.7e-245 850.5 641 67.7
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 1.3e-243 846.7 535 78.3
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.4e-242 842.4 640 66.6
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 1.2e-241 840.1 643 66.7
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.5e-241 839.7 640 66.9
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 5.8e-241 837.8 643 67.5
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.0e-240 837.0 640 66.7
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 2.2e-240 835.9 640 66.7
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 8.4e-240 833.9 641 65.8
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 1.1e-239 833.6 641 65.5
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.9e-239 832.8 640 65.6
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 1.1e-236 823.5 640 66.7
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 4.3e-236 821.6 641 65.4
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 9.7e-236 820.5 679 63.8
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 1.3e-235 820.1 643 65.9
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 3.7e-235 818.5 662 63.3
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 2.4e-234 815.8 643 63.9
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 3.4e-233 812.0 668 62.7
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 1.0e-232 810.4 645 64.3
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 5.0e-232 808.1 650 64.2
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 5.0e-232 808.1 647 64.1
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 1.4e-231 806.6 640 63.6
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 7.2e-231 804.3 640 65.0
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 1.6e-230 803.1 641 64.3
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 3.6e-230 802.0 636 64.8
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 6.1e-230 801.2 642 62.9
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 7.9e-230 800.8 638 65.8
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.0e-229 800.4 599 66.4
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 2.3e-229 799.3 639 62.8
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 2.3e-229 799.3 637 64.4
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 2.2e-227 792.7 644 64.0
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 6.3e-227 791.2 639 64.5
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 8.2e-227 790.8 641 64.3
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 1.8e-226 789.6 641 64.1
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 2.4e-226 789.3 640 61.6
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 2.4e-226 789.3 644 64.0
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 4.1e-226 788.5 641 63.8
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 4.1e-226 788.5 639 63.4
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 9.1e-226 787.3 641 63.3
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 9.1e-226 787.3 639 64.2
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 4.5e-225 785.0 639 63.7
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 3.8e-224 781.9 640 62.7
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 8.5e-224 780.8 584 68.0
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 2.5e-223 779.2 566 68.7
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 4.2e-223 778.5 639 62.8
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 4.7e-222 775.0 644 63.0
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 4.7e-222 775.0 638 62.1
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 6.1e-222 774.6 639 62.6
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 6.7e-221 771.2 642 62.9
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 5.7e-220 768.1 638 61.9
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 5.7e-220 768.1 636 61.5
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 6.3e-219 764.6 638 61.6
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 6.3e-219 764.6 643 63.1
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 1.4e-218 763.5 636 61.5
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 7.0e-218 761.1 637 61.5
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 9.1e-218 760.8 641 62.1
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 3.4e-217 758.8 637 61.5
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 5.9e-217 758.1 587 66.8
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 1.0e-216 757.3 638 61.4
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 5.0e-216 755.0 584 65.9
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 8.5e-216 754.2 647 61.2
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 9.4e-215 750.7 636 61.0
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 1.6e-214 750.0 638 61.0
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 1.0e-213 747.3 638 60.5
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 8.8e-213 744.2 638 61.6
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 1.5e-212 743.4 603 64.0
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 2.6e-212 742.7 638 60.2
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 9.7e-212 740.7 638 60.3
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 1.3e-208 730.3 578 64.2
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 4.4e-204 715.3 636 57.5
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 2.8e-203 712.6 641 58.0
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 9.1e-202 707.6 640 59.4
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 1.7e-200 703.4 674 56.7
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 7.0e-194 681.4 662 53.6
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 8.0e-190 667.9 604 57.3
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 1.3e-176 624.0 544 58.3
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 4.4e-164 582.4 563 54.4
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.0e-160 571.2 468 60.7
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.7e-155 553.9 495 59.0
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 1.2e-153 547.7 676 46.4
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 5.3e-149 532.3 569 51.3
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 3.2e-146 523.1 554 53.1
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 3.4e-132 476.5 429 55.9
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 6.5e-123 445.7 668 43.0
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 1.6e-118 431.0 643 41.1
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 2.8e-118 430.3 527 45.7
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 5.3e-117 426.0 391 60.9
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 1.1e-109 401.7 396 55.3
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 1.4e-109 401.4 787 34.7
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 6.5e-107 392.5 302 70.2
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 1.1e-101 375.2 568 39.4
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.0e-99 368.6 321 62.3
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 3.1e-93 347.1 204 87.7
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 6.3e-86 322.8 194 77.3
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 2.0e-76 291.2 286 54.2
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 1.0e-64 252.3 597 33.0
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 4.4e-63 246.9 226 55.8
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 4.4e-63 246.9 400 41.5
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 1.4e-56 225.3 145 75.2
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 4.0e-56 223.8 614 31.8
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 8.9e-56 222.6 263 53.2
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 7.5e-55 219.5 120 90.8
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 9.2e-53 212.6 207 59.4
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 3.5e-52 210.7 678 29.9
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 4.0e-48 197.2 135 77.8
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 5.2e-48 196.8 653 29.7
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 1.5e-47 195.3 173 61.8
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 9.6e-42 176.0 140 68.6
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.6e-41 175.3 381 35.4
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 4.7e-41 173.7 279 41.2
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 2.1e-33 148.3 175 49.7
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.1e-32 144.4 182 41.8
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.9e-32 143.3 286 37.1
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 2.0e-31 141.7 124 59.7
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 1.3e-27 129.0 111 65.8
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.6e-27 126.7 230 37.8
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.6e-27 126.7 254 35.8
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.9e-26 125.2 230 37.4
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.9e-26 125.2 230 37.4
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.9e-26 125.2 230 37.4
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 2.4e-21 108.2 63 88.9
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 4.2e-21 107.5 173 41.6
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 7.1e-21 106.7 173 41.6
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 9.3e-21 106.3 173 41.0
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.6e-20 105.5 173 41.0
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 2.1e-20 105.1 63 87.3
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 2.7e-12 78.2 49 73.5
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 1.1e-10 72.8 40 80.0


User provided reference genes

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