Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 1.2e-178 629.8 330 100.0
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 3.6e-159 565.1 307 97.7
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 2.0e-157 559.3 307 96.7
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 5.4e-155 551.2 307 94.1
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 2.9e-153 545.4 307 93.2
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 1.5e-152 543.1 307 92.8
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 4.3e-152 541.6 307 91.5
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 4.3e-152 541.6 307 92.8
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 4.3e-152 541.6 307 92.8
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 9.5e-152 540.4 307 92.8
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 9.5e-152 540.4 307 92.5
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 9.5e-152 540.4 307 91.9
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 1.6e-151 539.7 307 91.9
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.8e-151 538.9 307 92.8
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.8e-151 538.9 307 92.8
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 2.8e-151 538.9 307 92.5
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 2.8e-151 538.9 307 92.5
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 3.6e-151 538.5 307 91.9
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 4.7e-151 538.1 307 92.5
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 4.7e-151 538.1 307 92.2
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 4.7e-151 538.1 307 91.9
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 4.7e-151 538.1 307 90.9
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 6.1e-151 537.7 307 92.2
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 8.0e-151 537.3 307 92.2
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 1.8e-150 536.2 307 91.9
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 1.8e-150 536.2 307 91.2
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 2.3e-150 535.8 307 92.2
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 3.1e-150 535.4 307 91.5
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 4.0e-150 535.0 307 92.5
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 1.2e-149 533.5 307 90.9
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.2e-149 533.5 307 90.6
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 2.0e-149 532.7 307 90.2
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 2.0e-149 532.7 307 92.2
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 2.0e-149 532.7 307 90.6
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 2.0e-149 532.7 307 90.6
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 2.0e-149 532.7 307 92.2
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 2.6e-149 532.3 307 90.2
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 2.6e-149 532.3 307 90.2
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 3.4e-149 531.9 307 91.2
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 5.8e-149 531.2 307 91.2
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 7.5e-149 530.8 307 90.6
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 7.5e-149 530.8 307 90.2
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 9.8e-149 530.4 307 89.9
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 9.8e-149 530.4 307 90.2
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.7e-148 529.6 307 90.6
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 1.7e-148 529.6 307 91.2
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 2.2e-148 529.3 307 89.6
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 2.2e-148 529.3 307 89.6
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 2.2e-148 529.3 307 89.9
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 2.2e-148 529.3 307 91.2
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 4.9e-148 528.1 307 89.3
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 4.9e-148 528.1 307 91.2
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 4.9e-148 528.1 307 89.3
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 8.3e-148 527.3 307 88.9
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 8.3e-148 527.3 307 88.3
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 8.3e-148 527.3 307 89.3
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 8.3e-148 527.3 307 88.9
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 1.1e-147 526.9 307 88.9
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 1.4e-147 526.6 307 89.6
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 1.9e-147 526.2 307 88.6
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 1.9e-147 526.2 307 88.6
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 2.4e-147 525.8 307 88.9
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 2.4e-147 525.8 307 88.3
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 3.2e-147 525.4 307 90.2
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 4.1e-147 525.0 307 88.9
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 4.1e-147 525.0 307 91.9
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 5.4e-147 524.6 307 89.3
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 7.0e-147 524.2 307 88.9
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 7.0e-147 524.2 307 88.6
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 7.0e-147 524.2 307 87.9
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 7.0e-147 524.2 307 88.6
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 9.2e-147 523.9 307 88.6
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 1.2e-146 523.5 307 89.3
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 1.2e-146 523.5 306 89.9
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 2.0e-146 522.7 300 89.7
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 2.0e-146 522.7 307 88.3
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 2.0e-146 522.7 307 89.3
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 2.7e-146 522.3 307 89.3
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 3.5e-146 521.9 307 88.9
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 3.5e-146 521.9 306 89.5
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 4.6e-146 521.5 307 87.9
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 4.6e-146 521.5 307 88.3
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 4.6e-146 521.5 324 86.7
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 6.0e-146 521.2 307 88.6
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 7.8e-146 520.8 307 87.9
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 7.8e-146 520.8 307 87.3
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 7.8e-146 520.8 307 87.3
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 7.8e-146 520.8 307 87.3
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 1.7e-145 519.6 307 88.6
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 1.7e-145 519.6 307 89.9
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 2.3e-145 519.2 307 87.3
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 3.0e-145 518.8 307 87.9
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 8.6e-145 517.3 307 87.6
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 1.5e-144 516.5 307 87.6
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 1.9e-144 516.2 307 90.6
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 9.5e-144 513.8 307 87.3
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 9.5e-144 513.8 307 87.3
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 9.5e-144 513.8 307 87.3
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 2.8e-143 512.3 307 88.3
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 3.6e-143 511.9 307 86.6
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 8.0e-143 510.8 307 86.6
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 1.1e-142 510.4 305 87.2
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 2.3e-142 509.2 307 87.0
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 3.1e-142 508.8 307 86.6
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 5.2e-142 508.1 291 92.1
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 2.6e-141 505.8 307 86.0
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 3.4e-141 505.4 307 85.0
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 9.8e-141 503.8 307 84.7
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 8.3e-140 500.7 307 84.4
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 1.1e-139 500.4 307 85.0
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 2.4e-139 499.2 307 84.4
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 9.2e-139 497.3 299 87.3
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.2e-138 496.9 284 90.8
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 2.1e-138 496.1 307 84.0
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 1.7e-137 493.0 291 89.3
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 5.1e-137 491.5 291 88.3
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 8.6e-137 490.7 307 82.1
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 1.5e-136 490.0 291 88.3
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 3.3e-136 488.8 307 83.7
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 3.3e-136 488.8 307 83.7
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 3.3e-136 488.8 307 83.7
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 7.3e-136 487.6 291 86.6
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 9.5e-136 487.3 307 83.4
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 1.1e-134 483.8 291 87.3
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 4.0e-134 481.9 305 82.6
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 1.5e-133 479.9 291 89.3
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 2.0e-133 479.6 348 77.6
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 9.9e-133 477.2 269 94.8
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 9.9e-133 477.2 269 94.8
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.1e-131 473.8 290 84.8
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.9e-131 473.0 307 79.5
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 3.2e-131 472.2 291 85.2
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 2.5e-128 462.6 269 90.7
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 1.2e-127 460.3 307 82.7
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 2.4e-123 446.0 307 78.5
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 9.2e-123 444.1 307 76.9
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 3.5e-122 442.2 307 79.2
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 6.4e-116 421.4 297 74.7
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 6.0e-114 414.8 299 69.6
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.6e-111 406.8 229 90.8
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.4e-110 403.7 245 85.7
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 8.4e-108 394.4 304 66.4
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.6e-106 388.7 312 72.4
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 1.1e-102 377.5 269 80.3
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 1.8e-102 376.7 292 65.1
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 4.0e-102 375.6 300 65.3
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.3e-100 370.5 289 65.4
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 2.2e-100 369.8 210 94.3
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 3.2e-99 365.9 307 68.1
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 1.6e-95 353.6 299 67.2
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.1e-91 340.9 292 57.5
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 3.4e-77 292.7 172 90.7
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 7.9e-74 281.6 300 60.0
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 3.3e-72 276.2 284 51.4
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 9.1e-62 241.5 281 45.9
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.6e-61 240.7 150 83.3
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 1.1e-59 234.6 174 67.8
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.8e-55 219.9 211 57.3
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 7.7e-53 211.8 302 37.1
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 5.0e-52 209.1 141 82.3
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.1e-46 189.5 211 53.1
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.2e-45 188.0 216 49.1
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.2e-43 179.5 197 52.8
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.1e-42 177.2 216 48.6
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 8.0e-42 175.3 224 47.8
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 2.0e-32 144.1 124 67.7
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 4.4e-32 142.9 124 69.4
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.1e-30 138.3 119 58.0
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 1.1e-30 138.3 68 97.1
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 1.3e-28 131.3 82 84.1
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 5.8e-16 89.4 55 78.2
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.9e-15 87.0 51 90.2
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 6.0e-13 79.3 137 43.1
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 6.2e-10 69.3 65 55.4
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 1.4e-09 68.2 90 46.7
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 2.4e-09 67.4 37 86.5


User provided reference genes

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