Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 0.0e+00 1742.6 879 100.0
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 0.0e+00 1723.4 879 98.7
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 0.0e+00 1455.7 879 85.0
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 0.0e+00 1354.0 878 78.8
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 0.0e+00 1320.8 878 75.7
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 0.0e+00 1274.6 877 74.7
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 0.0e+00 1255.7 877 74.6
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 0.0e+00 1247.6 857 73.9
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 0.0e+00 1241.5 878 73.3
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 0.0e+00 1241.1 871 72.9
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 0.0e+00 1167.5 854 72.0
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 0.0e+00 1157.1 878 70.2
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 0.0e+00 1080.1 852 68.2
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.7e-296 1022.7 882 60.5
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 5.8e-289 997.7 876 59.7
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 4.1e-287 991.5 882 58.8
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 2.8e-283 978.8 882 58.4
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 1.1e-276 956.8 886 57.4
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 1.0e-269 933.7 879 56.0
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.1e-263 913.7 880 55.1
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 1.9e-263 912.9 880 56.5
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 9.3e-263 910.6 880 55.0
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.2e-262 910.2 890 55.5
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 7.9e-262 907.5 885 55.3
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.0e-261 907.1 880 54.8
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 8.7e-261 904.0 882 55.0
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 9.0e-258 894.0 857 56.6
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.4e-257 892.1 881 54.8
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.2e-255 885.2 881 54.5
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 9.3e-255 884.0 883 53.6
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.2e-254 883.6 882 53.7
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 1.3e-253 880.2 884 53.2
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.1e-252 877.1 883 53.5
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.1e-250 870.5 883 53.1
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 6.9e-250 867.8 881 53.2
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.7e-248 863.2 877 53.1
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 4.9e-248 861.7 885 52.5
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 8.4e-248 860.9 886 53.2
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 7.9e-246 854.4 945 51.5
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.3e-245 853.6 918 50.7
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 1.8e-245 853.2 894 51.7
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 1.9e-244 849.7 913 52.6
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.3e-244 849.0 883 51.9
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 4.3e-244 848.6 862 54.4
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.8e-243 845.9 883 51.6
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 3.4e-241 839.0 890 51.7
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 7.7e-241 837.8 883 50.7
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 7.7e-241 837.8 889 52.6
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 1.0e-240 837.4 764 57.6
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 7.9e-238 827.8 870 51.4
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 6.7e-237 824.7 836 52.5
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 3.3e-236 822.4 885 50.4
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 6.9e-234 814.7 882 49.3
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.0e-232 810.8 887 49.6
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 9.4e-231 804.3 745 57.3
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.1e-230 803.1 959 49.2
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 2.7e-230 802.7 887 48.8
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.3e-228 795.8 898 49.1
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 1.1e-223 780.8 889 48.3
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.9e-223 780.0 882 47.6
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 7.2e-223 778.1 732 56.4
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 7.2e-223 778.1 883 48.5
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.2e-222 777.3 883 49.6
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 5.7e-220 768.5 903 48.1
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 2.0e-217 760.0 862 49.7
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 2.6e-217 759.6 886 47.1
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 5.0e-216 755.4 885 47.7
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 2.7e-214 749.6 882 46.7
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 2.8e-211 739.6 885 45.8
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 9.1e-210 734.6 884 45.0
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 8.5e-208 728.0 884 46.3
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 2.5e-207 726.5 882 46.6
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 4.0e-205 719.2 882 46.3
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 8.8e-205 718.0 889 46.7
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 3.4e-204 716.1 887 45.8
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 4.4e-204 715.7 909 45.2
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 5.7e-204 715.3 697 54.9
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 5.7e-204 715.3 952 44.3
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 4.9e-203 712.2 887 45.7
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 4.1e-202 709.1 887 45.8
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 4.5e-201 705.7 887 45.5
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.9e-200 703.0 882 45.6
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.1e-199 701.0 882 45.1
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.1e-199 701.0 727 51.9
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.9e-199 700.3 887 45.2
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.3e-197 693.3 882 45.0
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 5.2e-197 692.2 896 44.3
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 1.3e-192 677.6 652 56.6
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 7.3e-191 671.8 886 44.7
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 1.0e-189 667.9 696 52.7
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.3e-189 666.8 909 43.0
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 2.3e-189 666.8 932 42.5
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 5.8e-188 662.1 898 43.1
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.7e-187 659.4 885 43.5
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 6.0e-185 652.1 833 44.5
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.3e-184 651.0 893 42.6
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 5.6e-183 645.6 817 45.9
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.4e-178 630.2 625 53.3
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 4.1e-178 629.4 709 50.2
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 1.5e-172 610.9 664 50.3
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 2.4e-170 603.6 697 50.1
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 3.0e-168 596.7 893 40.6
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.0e-152 543.5 652 47.2
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 1.1e-149 535.0 884 38.0
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.4e-146 524.6 809 41.8
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 6.0e-145 519.2 899 38.0
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 7.9e-145 518.8 697 43.3
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 3.7e-134 483.4 641 43.2
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 9.0e-133 478.8 556 50.2
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 3.9e-128 463.4 752 37.9
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 4.3e-127 459.9 884 36.1
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 1.4e-125 454.9 778 37.4
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.9e-120 436.8 548 43.6
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 5.3e-117 426.4 335 68.4
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 5.5e-114 416.4 683 37.6
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 4.5e-100 370.2 756 35.8
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 3.8e-99 367.1 193 96.9
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 4.0e-96 357.1 262 68.7
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 6.8e-88 329.7 957 29.3
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 6.8e-88 329.7 957 29.3
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 1.5e-87 328.6 600 36.7
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.8e-85 321.6 532 38.5
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.0e-85 319.7 284 60.6
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 9.2e-85 319.3 241 66.4
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.4e-80 305.4 240 64.6
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 5.2e-80 303.5 967 27.9
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 1.7e-75 288.5 519 33.7
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.7e-75 288.5 737 31.3
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 9.2e-69 266.2 193 69.9
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 1.6e-68 265.4 209 63.2
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 6.8e-64 250.0 195 63.6
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 2.8e-57 228.0 748 27.4
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.9e-53 215.3 350 35.7
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.2e-49 202.6 214 51.4
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 5.2e-48 197.2 140 68.6
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 6.9e-48 196.8 258 45.0
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.5e-47 195.7 190 53.2
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 8.4e-46 189.9 341 35.8
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.4e-45 188.3 202 47.0
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 2.4e-45 188.3 199 49.2
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 4.8e-41 174.1 145 63.4
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.2e-39 169.5 216 43.5
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.4e-37 160.6 240 40.0
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 7.1e-37 160.2 97 80.4
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 3.5e-36 157.9 94 81.9
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 7.9e-36 156.8 165 52.1
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 3.0e-35 154.8 186 44.6
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 6.7e-35 153.7 218 38.5
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 3.6e-33 147.9 109 65.1
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 2.4e-32 145.2 212 37.7
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 1.1e-26 126.3 84 76.2
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 2.5e-26 125.2 96 70.8
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.2e-23 116.3 171 45.6
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.5e-23 115.9 273 30.0
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 2.0e-23 115.5 184 37.5
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 3.8e-22 111.3 103 59.2
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 6.7e-19 100.5 170 37.1
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 7.4e-18 97.1 182 34.6
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 6.3e-17 94.0 186 33.9
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 4.2e-13 81.3 51 80.4
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 9.3e-13 80.1 110 41.8
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 5.3e-08 64.3 112 33.0
Cfa026921 Carpinus fangiana HOM05D004248 ORTHO05D004978 5.9e-07 60.8 179 27.4
Psat7g011720 Pisum sativum HOM05D000081 ORTHO05D004978 1.7e-06 59.3 38 68.4


User provided reference genes

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