Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G098700 Glycine max HOM05D006146 ORTHO05D007924 7.9e-217 756.9 402 100.0
Glyma.07G152900 Glycine max HOM05D006146 ORTHO05D007924 3.1e-205 718.4 401 96.0
Glyma.18G204000 Glycine max HOM05D006146 ORTHO05D007924 2.7e-193 678.7 401 90.3
VMungo1383G3422 Vigna mungo HOM05D006146 ORTHO05D007924 8.2e-166 587.4 400 79.0
Lj1g0005300 Lotus japonicus HOM05D006146 ORTHO05D007924 2.4e-165 585.9 419 76.4
Phvul.008G095600 Phaseolus vulgaris HOM05D006146 ORTHO05D007924 1.7e-158 563.1 395 75.9
Lalb_Chr03g0043371 Lupinus albus HOM05D006146 ORTHO05D007924 2.7e-156 555.8 410 72.0
Psat3g126240 Pisum sativum HOM05D006146 ORTHO05D007924 1.5e-154 550.1 401 73.8
Ca_07664_v3 Cicer arietinum L. HOM05D006146 ORTHO05D007924 4.7e-153 545.0 418 71.3
arahy.Tifrunner.gnm1.ann1.D29HQK Arachis hypogaea HOM05D006146 ORTHO05D007924 6.3e-150 534.6 393 73.3
arahy.Tifrunner.gnm1.ann1.S46L09 Arachis hypogaea HOM05D006146 ORTHO05D007924 6.3e-150 534.6 421 70.3
Medtr7g069480 Medicago truncatula HOM05D006146 ORTHO05D007924 2.9e-147 525.8 400 70.5
TPR.G35447 Trifolium pratense HOM05D006146 ORTHO05D007924 2.9e-142 509.2 400 70.2
Cfa017174 Carpinus fangiana HOM05D006146 ORTHO05D007924 1.4e-141 506.9 405 68.1
Thecc.05G012100 Theobroma cacao HOM05D006146 ORTHO05D007924 1.1e-138 497.3 412 65.3
RcHm_v2.0_Chr3g0462541 Rosa chinensis HOM05D006146 ORTHO05D007924 2.8e-137 492.7 403 64.5
Cc06_g01080 Coffea canephora HOM05D006146 ORTHO05D007924 1.5e-135 486.9 402 64.7
CiPaw.09G211700 Carya illinoinensis HOM05D006146 ORTHO05D007924 2.6e-135 486.1 401 67.1
Dinv16910 Davidia involucrata HOM05D006146 ORTHO05D007924 8.3e-134 481.1 403 63.5
Gorai.012G116800 Gossypium raimondii HOM05D006146 ORTHO05D007924 2.4e-133 479.6 409 63.1
vmacro20300 Vaccinium macrocarpon HOM05D006146 ORTHO05D007924 2.4e-133 479.6 407 65.4
QL07p034872 Quercus lobata HOM05D006146 ORTHO05D007924 4.6e-132 475.3 403 64.3
Gohir.A04G093600 Gossypium hirsutum HOM05D006146 ORTHO05D007924 5.0e-131 471.9 408 63.2
MD00G1062300 Malus domestica HOM05D006146 ORTHO05D007924 2.5e-130 469.5 407 63.9
FvH4_6g11110 Fragaria vesca HOM05D006146 ORTHO05D007924 7.3e-130 468.0 403 63.8
Lj2C71G10 Lonicera japonica HOM05D003030 ORTHO05D003610 9.5e-130 467.6 406 60.8
FAN14G4754 Fragaria x ananassa HOM05D006146 ORTHO05D007924 6.2e-129 464.9 403 63.3
Prupe.6G280600 Prunus persica HOM05D006146 ORTHO05D007924 5.2e-128 461.8 407 62.7
Peaxi162Scf01132g00127 Petunia axillaris HOM05D006146 ORTHO05D007924 2.0e-127 459.9 409 61.6
TAR636G3413 Trochodendron aralioides HOM05D006146 ORTHO05D007924 3.4e-127 459.1 402 61.7
FAN02G2047 Fragaria x ananassa HOM05D006146 ORTHO05D007924 4.4e-127 458.8 403 62.3
CSS0000590 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 5.8e-127 458.4 402 63.9
CSS0012094 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 5.8e-127 458.4 402 63.9
Potri.016G120000 Populus trichocarpa HOM05D006146 ORTHO05D007924 1.7e-126 456.8 406 63.5
Sopen09g001100 Solanum pennellii HOM05D006146 ORTHO05D007924 4.9e-126 455.3 406 60.8
Gohir.A09G166500 Gossypium hirsutum HOM05D006146 ORTHO05D007924 6.4e-126 454.9 414 60.6
Gorai.006G183800 Gossypium raimondii HOM05D006146 ORTHO05D007924 1.4e-125 453.8 414 60.9
Haze_21031 Corylus avellana HOM05D006146 ORTHO05D007924 1.9e-125 453.4 355 67.6
Rhsim05G0219200 Rhododendron simsii HOM05D006146 ORTHO05D007924 1.9e-125 453.4 405 60.7
Oeu042663.2 Olea europaea HOM05D006146 ORTHO05D007924 2.4e-125 453.0 406 61.8
CAN.G133.15 Capsicum annuum HOM05D006146 ORTHO05D007924 3.2e-125 452.6 406 62.1
MD12G1172300 Malus domestica HOM05D006146 ORTHO05D007924 4.1e-125 452.2 407 62.4
CANSAT35G1531 Cannabis sativa HOM05D006146 ORTHO05D007924 1.6e-124 450.3 383 61.6
Gohir.D09G162100 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.6e-124 450.3 414 60.1
Solyc09g005120.3 Solanum lycopersicum HOM05D006146 ORTHO05D007924 3.5e-124 449.1 406 59.9
Ciclev10011366m.g Citrus clementina HOM05D006146 ORTHO05D007924 4.6e-124 448.7 403 61.0
MSTRG.5562 Avicennia marina HOM05D006146 ORTHO05D007924 6.0e-124 448.4 403 59.3
Atru.chr8.2278 Acer truncatum HOM05D006146 ORTHO05D007924 1.3e-123 447.2 403 60.8
TWI53G1621 Tripterygium wilfordii HOM05D006146 ORTHO05D007924 3.0e-123 446.0 415 60.0
Aqoxy4G02469 Aquilegia oxysepala HOM05D006146 ORTHO05D007924 9.5e-122 441.0 403 59.1
PGSC0003DMG400006271 Solanum tuberosum HOM05D006146 ORTHO05D007924 2.1e-121 439.9 415 58.1
Dinv13137 Davidia involucrata HOM05D006146 ORTHO05D007924 3.6e-121 439.1 403 59.8
SGA_v2.0_scaffold85G26717 Striga asiatica HOM05D006146 ORTHO05D007924 6.2e-121 438.3 404 59.9
Nitab4.5_0003654g0010 Nicotiana tabacum HOM05D006146 ORTHO05D007924 2.3e-120 436.4 381 61.2
Manes.08G094300 Manihot esculenta HOM05D006146 ORTHO05D007924 1.2e-119 434.1 404 62.1
Nn2g10908 Nelumbo nucifera HOM05D006146 ORTHO05D007924 1.5e-119 433.7 403 58.8
AT3G08970 Arabidopsis thaliana HOM05D006146 ORTHO05D007924 3.4e-119 432.6 400 59.8
Migut.J00133 Erythranthe guttata HOM05D006146 ORTHO05D007924 4.4e-119 432.2 404 57.4
Sed0026013 Sechium edule HOM05D006146 ORTHO05D007924 5.8e-119 431.8 401 59.4
EL10Ac5g12530 Beta vulgaris HOM05D006146 ORTHO05D007924 1.3e-118 430.6 388 59.3
GSVIVG01003939001 Vitis vinifera HOM05D006146 ORTHO05D007924 1.3e-118 430.6 349 64.5
Aa31LG5G18940 Aethionema arabicum HOM05D006146 ORTHO05D007924 2.9e-118 429.5 377 60.7
ClCG10G022330 Citrullus lanatus HOM05D006146 ORTHO05D007924 4.9e-118 428.7 431 54.8
Eucgr.A00545 Eucalyptus grandis HOM05D006146 ORTHO05D007924 6.4e-118 428.3 400 57.2
Hund14889 Selenicereus undatus HOM05D006146 ORTHO05D007924 1.1e-117 427.6 410 58.5
Nitab4.5_0000195g0240 Nicotiana tabacum HOM05D006146 ORTHO05D007924 1.4e-117 427.2 381 60.4
Carub.0003s0810 Capsella rubella HOM05D006146 ORTHO05D007924 1.9e-117 426.8 404 58.2
Eucgr.A00544 Eucalyptus grandis HOM05D006146 ORTHO05D007924 2.4e-117 426.4 376 58.8
AL3G19990 Arabidopsis lyrata HOM05D006146 ORTHO05D007924 4.1e-117 425.6 381 59.3
SalBow5G2678 Salvia bowleyana HOM05D006146 ORTHO05D007924 3.0e-115 419.5 364 59.1
CsaV3_3G033560 Cucumis sativus L. HOM05D006146 ORTHO05D007924 7.3e-114 414.8 430 54.0
unitig_578.g15902 Utricularia gibba HOM05D003030 ORTHO05D003610 9.6e-114 414.5 403 56.3
Ah.12g058880 Amaranthus hybridus HOM05D006146 ORTHO05D007924 1.2e-113 414.1 439 54.4
MELO3C009146.2 Cucumis melo HOM05D006146 ORTHO05D007924 1.2e-113 414.1 431 54.1
Actinidia11568 Actinidia chinensis HOM05D006146 ORTHO05D007924 6.2e-113 411.8 373 61.1
C05p58910 Brassica napus HOM05D006146 ORTHO05D007924 1.4e-112 410.6 384 59.4
BolC5t34544H Brassica oleracea HOM05D006146 ORTHO05D007924 1.8e-112 410.2 386 57.8
CARHR083310 Cardamine hirsuta HOM05D006146 ORTHO05D007924 5.2e-112 408.7 376 58.0
Lsat_1_v5_gn_8_100801 Lactuca sativa HOM05D006146 ORTHO05D007924 8.9e-112 407.9 408 55.9
MBI03_g05510_MAGBIO Magnolia biondii HOM05D006146 ORTHO05D007924 1.2e-111 407.5 403 55.8
FAN05G4820 Fragaria x ananassa HOM05D006146 ORTHO05D007924 2.0e-111 406.8 416 56.7
Gohir.D04G132900 Gossypium hirsutum HOM05D006146 ORTHO05D007924 2.0e-111 406.8 467 51.8
Sp3g07390 Schrenkiella parvula HOM05D006146 ORTHO05D007924 2.9e-110 402.9 364 60.2
SHI12853 Sapria himalayana HOM05D006146 ORTHO05D007924 3.8e-110 402.5 399 54.4
THA.LOC104816204 Tarenaya hassleriana HOM05D006146 ORTHO05D007924 6.4e-110 401.7 353 60.3
A05p39870 Brassica napus HOM05D006146 ORTHO05D007924 1.1e-109 401.0 352 59.4
AUR62030469 Chenopodium quinoa HOM05D006146 ORTHO05D007924 1.4e-109 400.6 387 58.7
BraA05t22771Z Brassica rapa HOM05D006146 ORTHO05D007924 1.9e-109 400.2 380 57.4
AUR62010446 Chenopodium quinoa HOM05D006146 ORTHO05D007924 2.4e-109 399.8 382 57.1
ECA236G4528 Erigeron canadensis HOM05D006146 ORTHO05D007924 7.1e-109 398.3 405 54.8
PSO384G0066 Papaver somniferum HOM05D006146 ORTHO05D007924 3.5e-108 396.0 405 58.3
HanXRQChr12g0383181 Helianthus annuus HOM05D006146 ORTHO05D007924 1.0e-107 394.4 341 60.7
Thhalv10020374m.g Eutrema salsugineum HOM05D006146 ORTHO05D007924 3.9e-107 392.5 382 56.3
PSO339G2519 Papaver somniferum HOM05D006146 ORTHO05D007924 1.5e-106 390.6 405 57.8
Sc22g0002570 Simmondsia chinensis HOM05D006146 ORTHO05D007924 1.9e-106 390.2 396 53.3
ATR0681G078 Amborella trichopoda HOM05D006146 ORTHO05D007924 3.3e-106 389.4 410 52.0
CDE06G0106 Ceratophyllum demersum HOM05D003030 ORTHO05D003610 2.8e-105 386.3 401 51.9
PGR031G2778 Punica granatum HOM05D006146 ORTHO05D007924 2.8e-105 386.3 353 58.1
HPP92_025101 Vanilla planifolia HOM05D006146 ORTHO05D007924 6.9e-96 355.1 400 46.8
COL.COLO4_14502 Corchorus olitorius HOM05D006146 ORTHO05D007924 2.6e-95 353.2 254 70.9
Zm00001eb396940 Zea mays HOM05D006146 ORTHO05D007924 4.5e-95 352.4 412 49.3
Os03g0293000 Oryza sativa ssp. japonica HOM05D006146 ORTHO05D007924 2.9e-94 349.7 414 48.6
Sabra16G0115900 Salix brachista HOM05D006146 ORTHO05D007924 2.5e-82 310.1 359 52.4
CSS0039643 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.3e-81 307.8 399 49.1
DCAR_015389 Daucus carota HOM05D006146 ORTHO05D007924 4.8e-81 305.8 413 48.7
BcaC05g29631 Brassica carinata HOM05D006146 ORTHO05D007924 7.6e-79 298.5 391 48.3
Hma1.2p1_0362F.1_g136590 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 1.8e-75 287.3 236 65.3
SEGI_31782 Sequoiadendron giganteum HOM05D006146 ORTHO05D007924 2.5e-74 283.5 402 40.3
CSS0015893 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.6e-73 280.8 231 64.5
Hma1.2p1_0362F.1_g136580 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 3.7e-73 279.6 249 61.8
QL08p015836 Quercus lobata HOM05D006146 ORTHO05D007924 4.5e-71 272.7 279 55.2
CSS0011042 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.2e-63 248.1 231 60.6
CSS0031746 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 5.9e-63 245.7 387 43.2
CSS0030843 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.0e-62 245.0 394 42.6
Hund10973 Selenicereus undatus HOM05D006146 ORTHO05D007924 1.6e-55 221.1 240 53.3
Cpa.g.sc120.50 Carica papaya HOM05D006146 ORTHO05D007924 6.5e-54 215.7 173 67.1
FAN09G2516 Fragaria x ananassa HOM05D006146 ORTHO05D007924 4.2e-53 213.0 174 63.8
Hund10972 Selenicereus undatus HOM05D006146 ORTHO05D007924 1.4e-48 198.0 173 60.7
AagrBONN_evm.TU.Sc2ySwM_228.96 Anthoceros agrestis HOM05D006146 ORTHO05D007924 2.4e-48 197.2 333 35.4
Mapoly0184s0019 Marchantia polymorpha HOM05D006146 ORTHO05D007924 1.0e-43 181.8 404 35.1
SMO347G0184 Selaginella moellendorffii HOM05D006146 ORTHO05D007924 4.4e-42 176.4 400 32.0
Pp3c20_14730 Physcomitrium patens HOM05D006146 ORTHO05D007924 1.4e-40 171.4 401 32.2
Zm00001eb225170 Zea mays HOM05D006146 ORTHO05D007924 2.6e-34 150.6 163 52.8
Zm00001eb032720 Zea mays HOM05D006146 ORTHO05D007924 1.2e-28 131.7 180 45.6
Haze_20655 Corylus avellana HOM05D006146 ORTHO05D007924 8.6e-22 109.0 164 44.5
CBR_g38983 Chara braunii HOM05D000019 ORTHO05D000048 7.3e-21 105.9 369 27.9
QL07p034801 Quercus lobata HOM05D006146 ORTHO05D007924 4.9e-17 93.2 187 35.8
CBR_g1052 Chara braunii HOM05D031388 ORTHO05D028636 1.0e-06 58.9 156 26.3
Thecc.05G011800 Theobroma cacao HOM05D006146 ORTHO05D007924 5.1e-06 56.6 42 61.9


User provided reference genes

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