Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G097600 Glycine max HOM05D004832 ORTHO05D005821 1.6e-86 322.8 167 100.0
Phvul.010G055900 Phaseolus vulgaris HOM05D004832 ORTHO05D005821 2.1e-78 295.8 167 89.2
Glyma.07G109700 Glycine max HOM05D004832 ORTHO05D005821 1.9e-76 289.3 149 99.3
Lj3g0007809 Lotus japonicus HOM05D004832 ORTHO05D005821 4.3e-76 288.1 167 86.8
Medtr4g093680 Medicago truncatula HOM05D004832 ORTHO05D005821 2.6e-73 278.9 167 83.8
Ca_18388_v3 Cicer arietinum L. HOM05D004832 ORTHO05D005821 6.4e-72 274.2 167 82.6
Psat2g165520 Pisum sativum HOM05D004832 ORTHO05D005821 2.4e-71 272.3 167 83.8
Lj5g0022701 Lotus japonicus HOM05D004832 ORTHO05D005821 3.2e-71 271.9 168 82.7
Lalb_Chr07g0195651 Lupinus albus HOM05D004832 ORTHO05D005821 7.1e-71 270.8 167 80.8
COL.COLO4_11958 Corchorus olitorius HOM05D004832 ORTHO05D005821 3.5e-70 268.5 165 80.6
Thecc.01G386800 Theobroma cacao HOM05D004832 ORTHO05D005821 7.8e-70 267.3 165 80.0
COL.COLO4_12459 Corchorus olitorius HOM05D004832 ORTHO05D005821 1.0e-69 266.9 165 79.4
TPR.G2894 Trifolium pratense HOM05D004832 ORTHO05D005821 1.3e-69 266.5 163 82.2
arahy.Tifrunner.gnm1.ann1.W023QS Arachis hypogaea HOM05D004832 ORTHO05D005821 2.3e-69 265.8 167 79.0
Atru.chr5.207 Acer truncatum HOM05D004832 ORTHO05D005821 3.9e-69 265.0 166 79.5
arahy.Tifrunner.gnm1.ann1.YIL91U Arachis hypogaea HOM05D004832 ORTHO05D005821 6.6e-69 264.2 163 80.4
Gohir.A11G077700 Gossypium hirsutum HOM05D004832 ORTHO05D005821 6.6e-69 264.2 165 78.2
Gorai.007G087800 Gossypium raimondii HOM05D004832 ORTHO05D005821 8.7e-69 263.8 165 78.2
arahy.Tifrunner.gnm1.ann1.32ME5N Arachis hypogaea HOM05D004832 ORTHO05D005821 1.5e-68 263.1 167 78.4
arahy.Tifrunner.gnm1.ann1.88IY7S Arachis hypogaea HOM05D004832 ORTHO05D005821 1.5e-68 263.1 167 78.4
arahy.Tifrunner.gnm1.ann1.A6AVFI Arachis hypogaea HOM05D004832 ORTHO05D005821 1.5e-68 263.1 167 78.4
CSS0038442 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.9e-68 262.7 167 78.4
Gohir.D11G082100 Gossypium hirsutum HOM05D004832 ORTHO05D005821 1.9e-68 262.7 165 78.2
CiPaw.13G030400 Carya illinoinensis HOM05D004832 ORTHO05D005821 2.5e-68 262.3 167 78.4
ClCG05G000300 Citrullus lanatus HOM05D004832 ORTHO05D005821 2.5e-68 262.3 167 77.2
CsaV3_3G007460 Cucumis sativus L. HOM05D001289 ORTHO05D002298 2.5e-68 262.3 167 77.2
ECA234G0521 Erigeron canadensis HOM05D004832 ORTHO05D005821 9.6e-68 260.4 167 77.2
MD07G1111400 Malus domestica HOM05D004832 ORTHO05D005821 1.6e-67 259.6 167 77.8
MELO3C005967.2 Cucumis melo HOM05D004832 ORTHO05D005821 2.8e-67 258.8 167 76.0
MD10G1232800 Malus domestica HOM05D004832 ORTHO05D005821 3.6e-67 258.5 167 77.2
Sed0016485 Sechium edule HOM05D004832 ORTHO05D005821 4.8e-67 258.1 167 76.0
FAN01G1609 Fragaria x ananassa HOM05D004832 ORTHO05D005821 1.1e-66 256.9 167 76.0
Ciclev10022588m.g Citrus clementina HOM05D004832 ORTHO05D005821 1.8e-66 256.1 167 77.2
Prupe.2G134800 Prunus persica HOM05D004832 ORTHO05D005821 1.8e-66 256.1 167 77.2
Sc08g0005120 Simmondsia chinensis HOM05D004832 ORTHO05D005821 1.8e-66 256.1 167 74.9
FvH4_7g10630 Fragaria vesca HOM05D004832 ORTHO05D005821 5.3e-66 254.6 167 75.4
FAN06G0284 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.3e-66 254.6 167 75.4
FAN06G1644 Fragaria x ananassa HOM05D004832 ORTHO05D005821 5.3e-66 254.6 167 75.4
Lj9A562G31 Lonicera japonica HOM05D004832 ORTHO05D005821 5.3e-66 254.6 168 75.0
RcHm_v2.0_Chr1g0348571 Rosa chinensis HOM05D004832 ORTHO05D005821 5.3e-66 254.6 167 75.4
Eucgr.D02506 Eucalyptus grandis HOM05D004832 ORTHO05D005821 6.9e-66 254.2 166 75.9
Cfa011129 Carpinus fangiana HOM05D004832 ORTHO05D005821 1.5e-65 253.1 167 74.9
Manes.01G270800 Manihot esculenta HOM05D004832 ORTHO05D005821 2.6e-65 252.3 166 74.1
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 4.5e-65 251.5 154 81.2
GSVIVG01018202001 Vitis vinifera HOM05D004832 ORTHO05D005821 2.9e-64 248.8 163 74.8
HanXRQChr16g0519281 Helianthus annuus HOM05D004832 ORTHO05D005821 1.1e-63 246.9 167 73.7
Peaxi162Scf00377g00611 Petunia axillaris HOM05D004832 ORTHO05D005821 1.1e-63 246.9 166 74.1
Hund06868 Selenicereus undatus HOM05D004832 ORTHO05D005821 4.2e-63 245.0 164 72.6
Aqoxy7G02831 Aquilegia oxysepala HOM05D004832 ORTHO05D005821 5.4e-63 244.6 167 71.9
Dinv43651 Davidia involucrata HOM05D004832 ORTHO05D005821 5.4e-63 244.6 166 72.9
DCAR_029781 Daucus carota HOM05D004832 ORTHO05D005821 7.1e-63 244.2 167 71.3
VMungo0331G1454 Vigna mungo HOM05D004832 ORTHO05D005821 7.1e-63 244.2 140 87.1
Lsat_1_v5_gn_4_43780 Lactuca sativa HOM05D004832 ORTHO05D005821 9.3e-63 243.8 162 75.3
Oeu061515.1 Olea europaea HOM05D004832 ORTHO05D005821 1.6e-62 243.0 166 73.5
vmacro00550 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.1e-62 242.7 193 66.3
MSTRG.17149 Avicennia marina HOM05D004832 ORTHO05D005821 4.6e-62 241.5 166 75.3
MBI04_g11708_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 4.6e-62 241.5 164 73.8
SGA_v2.0_scaffold153G36948 Striga asiatica HOM05D004832 ORTHO05D005821 4.6e-62 241.5 166 74.7
Hma1.2p1_0341F.1_g130370 Hydrangea macrophylla HOM05D004832 ORTHO05D005821 6.0e-62 241.1 170 71.2
Nn6g33924 Nelumbo nucifera HOM05D004832 ORTHO05D005821 6.0e-62 241.1 153 76.5
PSO063G5716 Papaver somniferum HOM05D004832 ORTHO05D005821 6.0e-62 241.1 167 71.3
Solyc01g090720.3 Solanum lycopersicum HOM05D004832 ORTHO05D005821 6.0e-62 241.1 166 71.1
Sopen01g036450 Solanum pennellii HOM05D004832 ORTHO05D005821 7.9e-62 240.7 166 71.7
CAN.G899.18 Capsicum annuum HOM05D004832 ORTHO05D005821 1.3e-61 240.0 166 71.1
Cc02_g24530 Coffea canephora HOM05D004832 ORTHO05D005821 1.3e-61 240.0 166 72.9
Haze_02734 Corylus avellana HOM05D004832 ORTHO05D005821 1.3e-61 240.0 189 65.6
Migut.B01571 Erythranthe guttata HOM05D004832 ORTHO05D005821 1.3e-61 240.0 166 72.3
CANSAT64G0775 Cannabis sativa HOM05D004832 ORTHO05D005821 2.3e-61 239.2 161 73.9
Sabra02G0110600 Salix brachista HOM05D004832 ORTHO05D005821 3.0e-61 238.8 169 70.4
HanXRQChr05g0138431 Helianthus annuus HOM05D004832 ORTHO05D005821 5.1e-61 238.0 166 70.5
PSO017G2958 Papaver somniferum HOM05D004832 ORTHO05D005821 6.7e-61 237.7 167 70.7
Nitab4.5_0000706g0140 Nicotiana tabacum HOM05D004832 ORTHO05D005821 1.5e-60 236.5 167 70.7
SGA_v2.0_scaffold52G19196 Striga asiatica HOM05D004832 ORTHO05D005821 1.5e-60 236.5 166 72.9
FAN03G2909 Fragaria x ananassa HOM05D004832 ORTHO05D005821 7.4e-60 234.2 191 63.9
Nitab4.5_0001823g0010 Nicotiana tabacum HOM05D004832 ORTHO05D005821 9.6e-60 233.8 166 69.9
Potri.002G142000 Populus trichocarpa HOM05D004832 ORTHO05D005821 9.6e-60 233.8 169 69.8
Potri.002G142100 Populus trichocarpa HOM05D004832 ORTHO05D005821 1.6e-59 233.0 169 69.2
Glyma.02G101600 Glycine max HOM05D004832 ORTHO05D005821 4.8e-59 231.5 127 91.3
Rhsim07G0033000 Rhododendron simsii HOM05D004832 ORTHO05D005821 3.4e-57 225.3 204 59.3
ATR0317G035 Amborella trichopoda HOM05D004832 ORTHO05D005821 5.8e-57 224.6 159 70.4
HPP92_023799 Vanilla planifolia HOM05D004832 ORTHO05D005821 1.3e-56 223.4 167 65.3
Duzib138G0601 Durio zibethinus HOM05D004832 ORTHO05D005821 4.2e-55 218.4 138 76.8
Zm00001eb272690 Zea mays HOM05D004832 ORTHO05D005821 5.5e-55 218.0 166 62.0
AL5G21320 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 9.3e-55 217.2 165 65.5
Carub.0003s1502 Capsella rubella HOM05D004832 ORTHO05D005821 2.1e-54 216.1 163 65.6
AUR62024291 Chenopodium quinoa HOM05D004832 ORTHO05D005821 3.5e-54 215.3 190 58.9
Carub.0008s1260 Capsella rubella HOM05D004832 ORTHO05D005821 7.9e-54 214.2 163 64.4
AL3G27790 Arabidopsis lyrata HOM05D004832 ORTHO05D005821 8.7e-53 210.7 163 64.4
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 1.3e-51 206.8 157 63.1
Ah.03g133100 Amaranthus hybridus HOM05D004832 ORTHO05D005821 1.3e-51 206.8 137 71.5
C01p49120 Brassica napus HOM05D004832 ORTHO05D005821 4.8e-51 204.9 165 59.4
BolC1t04876H Brassica oleracea HOM05D004832 ORTHO05D005821 1.1e-50 203.8 165 58.8
AT3G15351 Arabidopsis thaliana HOM05D004832 ORTHO05D005821 1.4e-50 203.4 137 71.5
A01p38670 Brassica napus HOM05D004832 ORTHO05D005821 1.4e-50 203.4 165 58.2
BraA01t03917Z Brassica rapa HOM05D004832 ORTHO05D005821 1.4e-50 203.4 165 58.2
BcaC09g48497 Brassica carinata HOM05D004832 ORTHO05D005821 2.0e-49 199.5 165 58.2
Psat5g158760 Pisum sativum HOM05D004832 ORTHO05D005821 2.0e-49 199.5 140 73.6
PGR119G1038 Punica granatum HOM05D004832 ORTHO05D005821 2.0e-49 199.5 165 62.4
AUR62035275 Chenopodium quinoa HOM05D004832 ORTHO05D005821 2.6e-49 199.1 135 71.1
SEGI_17839 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 2.6e-49 199.1 163 61.3
BcaB07g33539 Brassica carinata HOM05D004832 ORTHO05D005821 4.5e-49 198.4 165 59.4
QL04p035586 Quercus lobata HOM05D004832 ORTHO05D005821 5.8e-49 198.0 117 82.1
BcaC01g05853 Brassica carinata HOM05D004832 ORTHO05D005821 1.3e-48 196.8 150 60.0
Thhalv10021656m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 2.9e-48 195.7 167 56.9
Thhalv10023724m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 3.8e-48 195.3 167 56.9
TAR629G1420 Trochodendron aralioides HOM05D004832 ORTHO05D005821 4.9e-48 194.9 122 78.7
THA.LOC104813152 Tarenaya hassleriana HOM05D004832 ORTHO05D005821 6.5e-48 194.5 139 68.3
CDE06G2810 Ceratophyllum demersum HOM05D004832 ORTHO05D005821 1.4e-47 193.4 136 67.6
Thhalv10009904m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.4e-47 193.4 167 55.7
MBI03_g13774_MAGBIO Magnolia biondii HOM05D004832 ORTHO05D005821 1.9e-47 193.0 174 60.9
Sp7g07030 Schrenkiella parvula HOM05D004832 ORTHO05D005821 4.2e-47 191.8 165 56.4
Os07g0485600 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 7.1e-47 191.0 127 68.5
Thhalv10009807m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 9.3e-47 190.7 167 55.7
CSS0042819 Camellia sinensis var. sinensis HOM05D004832 ORTHO05D005821 1.6e-46 189.9 116 79.3
DCAR_022632 Daucus carota HOM05D004832 ORTHO05D005821 1.6e-46 189.9 118 76.3
arahy.Tifrunner.gnm1.ann1.W1G7Z9 Arachis hypogaea HOM05D004832 ORTHO05D005821 2.1e-46 189.5 117 79.5
C03p21760 Brassica napus HOM05D004832 ORTHO05D005821 4.6e-46 188.3 137 62.0
QL04p046167 Quercus lobata HOM05D004832 ORTHO05D005821 1.9e-44 183.0 121 76.9
QL04p020302 Quercus lobata HOM05D004832 ORTHO05D005821 7.4e-44 181.0 117 75.2
Psat6g056000 Pisum sativum HOM05D004832 ORTHO05D005821 5.7e-36 154.8 122 69.7
Thhalv10009921m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 7.4e-36 154.5 162 51.9
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 2.8e-35 152.5 118 65.3
SEGI_40532 Sequoiadendron giganteum HOM05D004832 ORTHO05D005821 6.3e-35 151.4 118 62.7
Pp3c10_24560 Physcomitrium patens HOM05D004832 ORTHO05D005821 1.1e-34 150.6 163 48.5
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 2.4e-34 149.4 89 80.9
AagrBONN_evm.TU.Sc2ySwM_368.2344 Anthoceros agrestis HOM05D004832 ORTHO05D005821 7.7e-33 144.4 167 45.5
Mapoly0002s0300 Marchantia polymorpha HOM05D004832 ORTHO05D005821 1.1e-31 140.6 175 46.9
Glyma.03G117400 Glycine max HOM05D004832 ORTHO05D005821 2.7e-30 136.0 73 91.8
AUR62005450 Chenopodium quinoa HOM05D004832 ORTHO05D005821 6.1e-30 134.8 135 56.3
HanXRQChr13g0390291 Helianthus annuus HOM05D004832 ORTHO05D005821 1.8e-29 133.3 92 66.3
Sp1g41650 Schrenkiella parvula HOM05D004832 ORTHO05D005821 3.9e-29 132.1 118 54.2
HPP92_023759 Vanilla planifolia HOM05D004832 ORTHO05D005821 6.7e-29 131.3 123 54.5
EL10Ac6g13797 Beta vulgaris HOM05D004832 ORTHO05D005821 1.1e-28 130.6 84 76.2
Atru.chr5.209 Acer truncatum HOM05D004832 ORTHO05D005821 3.3e-28 129.0 76 80.3
SMO141G0160 Selaginella moellendorffii HOM05D004832 ORTHO05D005821 1.3e-27 127.1 142 45.8
Potri.014G057550 Populus trichocarpa HOM05D004832 ORTHO05D005821 9.4e-23 110.9 167 44.9
CARHR215320 Cardamine hirsuta HOM05D004832 ORTHO05D005821 6.1e-22 108.2 71 70.4
BcaC08g43270 Brassica carinata HOM05D004832 ORTHO05D005821 1.0e-21 107.5 96 54.2
C06p06180 Brassica napus HOM05D004832 ORTHO05D005821 1.0e-21 107.5 96 54.2
BolC6t35729H Brassica oleracea HOM05D004832 ORTHO05D005821 1.0e-21 107.5 96 54.2
Thhalv10002901m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.5e-20 103.6 153 40.5
Thhalv10009561m.g Eutrema salsugineum HOM05D004832 ORTHO05D005821 1.5e-20 103.6 99 55.6
HPP92_023760 Vanilla planifolia HOM05D004832 ORTHO05D005821 2.6e-20 102.8 103 50.5
CARHR090340 Cardamine hirsuta HOM05D004832 ORTHO05D005821 2.6e-17 92.8 77 63.6
QL12p027350 Quercus lobata HOM05D004832 ORTHO05D005821 2.6e-17 92.8 57 70.2
Sabra14G0041800 Salix brachista HOM05D004832 ORTHO05D005821 6.5e-16 88.2 75 65.3
Os06g0535333 Oryza sativa ssp. japonica HOM05D004832 ORTHO05D005821 1.8e-13 80.1 59 64.4
Oeu063212.2 Olea europaea HOM05D004832 ORTHO05D005821 2.3e-13 79.7 167 35.9
Atru.chr5.208 Acer truncatum HOM05D004832 ORTHO05D005821 4.0e-13 79.0 54 74.1
arahy.Tifrunner.gnm1.ann1.T8JHIW Arachis hypogaea HOM05D004832 ORTHO05D005821 6.7e-13 78.2 63 61.9
Atru.chr5.565 Acer truncatum HOM05D004832 ORTHO05D005821 9.7e-12 74.3 50 76.0
Atru.chr5.584 Acer truncatum HOM05D004832 ORTHO05D005821 1.3e-11 73.9 49 75.5
Nn1g00967 Nelumbo nucifera HOM05D004832 ORTHO05D005821 7.0e-10 68.2 58 51.7
vmacro13464 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 2.0e-09 66.6 48 68.8
vmacro05238 Vaccinium macrocarpon HOM05D004832 ORTHO05D005821 1.2e-06 57.4 42 73.8


User provided reference genes

Program Settings