Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 3.7e-79 298.1 149 100.0
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 1.3e-55 219.9 114 97.4
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 2.3e-52 209.1 107 96.3
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 1.1e-51 206.8 107 95.3
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 2.1e-50 202.6 107 92.5
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 8.0e-50 200.7 107 90.7
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 1.1e-49 200.3 107 90.7
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 5.2e-49 198.0 107 88.8
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 6.8e-49 197.6 107 88.8
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 2.0e-48 196.1 106 89.6
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 7.5e-48 194.1 107 86.0
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 1.3e-47 193.4 110 85.5
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 3.5e-45 185.3 107 82.2
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 3.5e-45 185.3 107 82.2
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 6.0e-45 184.5 106 82.1
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 6.0e-45 184.5 106 82.1
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 6.0e-45 184.5 107 81.3
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 1.0e-44 183.7 107 82.2
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 1.3e-44 183.3 107 80.4
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 1.7e-44 183.0 107 80.4
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 2.3e-44 182.6 107 81.3
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 5.0e-44 181.4 107 79.4
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 5.0e-44 181.4 107 79.4
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 6.6e-44 181.0 107 81.3
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 6.6e-44 181.0 107 78.5
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 8.6e-44 180.6 107 80.4
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 8.6e-44 180.6 107 78.5
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 8.6e-44 180.6 106 80.2
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 1.1e-43 180.3 107 80.4
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 1.1e-43 180.3 107 76.6
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 1.5e-43 179.9 107 76.6
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 1.9e-43 179.5 107 79.4
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 1.9e-43 179.5 107 76.6
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 1.9e-43 179.5 107 80.4
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 1.9e-43 179.5 107 80.4
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 1.9e-43 179.5 107 81.3
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 3.3e-43 178.7 107 78.5
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 3.3e-43 178.7 107 77.6
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 3.3e-43 178.7 107 77.6
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 4.3e-43 178.3 107 80.4
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 5.6e-43 177.9 107 78.5
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 7.3e-43 177.6 113 77.0
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 7.3e-43 177.6 107 78.5
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 9.5e-43 177.2 107 76.6
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 9.5e-43 177.2 107 78.5
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 1.2e-42 176.8 107 75.7
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 1.2e-42 176.8 107 79.4
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 1.6e-42 176.4 107 79.4
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.8e-42 175.6 107 76.6
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 4.7e-42 174.9 107 78.5
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 4.7e-42 174.9 107 77.6
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 6.2e-42 174.5 107 76.6
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 6.2e-42 174.5 107 75.7
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 6.2e-42 174.5 107 77.6
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.4e-41 173.3 107 76.6
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 2.3e-41 172.6 107 74.8
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 3.1e-41 172.2 109 75.2
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 4.0e-41 171.8 107 75.7
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 4.0e-41 171.8 107 78.5
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 5.2e-41 171.4 107 78.5
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 1.5e-40 169.9 107 77.6
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 1.5e-40 169.9 107 75.7
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 1.5e-40 169.9 107 74.8
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 2.0e-40 169.5 107 73.8
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 2.6e-40 169.1 88 94.3
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 3.4e-40 168.7 107 76.6
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 3.4e-40 168.7 107 76.6
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 3.4e-40 168.7 107 76.6
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 3.4e-40 168.7 107 76.6
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 4.4e-40 168.3 107 77.6
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 4.4e-40 168.3 107 75.7
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 4.4e-40 168.3 107 76.6
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 4.4e-40 168.3 107 75.7
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 7.5e-40 167.5 107 75.7
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 7.5e-40 167.5 107 75.7
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 9.9e-40 167.2 107 76.6
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 1.3e-39 166.8 116 72.4
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 1.7e-39 166.4 107 74.8
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 1.7e-39 166.4 107 74.8
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 2.2e-39 166.0 107 71.0
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 4.9e-39 164.9 107 73.8
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 4.9e-39 164.9 107 73.8
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 6.4e-39 164.5 107 72.9
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 1.1e-38 163.7 107 75.7
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 2.4e-38 162.5 107 72.9
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 2.4e-38 162.5 107 72.9
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 4.1e-38 161.8 107 72.9
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 4.1e-38 161.8 107 73.8
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 5.4e-38 161.4 107 71.0
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 7.1e-38 161.0 107 71.0
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 9.2e-38 160.6 107 71.0
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 9.2e-38 160.6 107 71.0
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 6.0e-37 157.9 107 72.9
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 5.6e-35 151.4 107 68.2
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 9.5e-35 150.6 107 62.6
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 8.1e-34 147.5 92 73.9
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 2.0e-32 142.9 107 64.5
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 2.6e-32 142.5 91 73.6
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 1.7e-31 139.8 107 63.6
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 3.5e-29 132.1 107 63.6
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 4.3e-27 125.2 107 61.7
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 7.1e-22 107.8 73 71.2
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 4.6e-21 105.1 106 47.2
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 8.7e-20 100.9 59 89.8
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.9e-19 99.8 107 51.4
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 1.9e-19 99.8 107 51.4
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 3.3e-19 99.0 56 78.6
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 4.8e-18 95.1 56 75.0
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 6.2e-18 94.7 54 81.5
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 6.2e-18 94.7 58 77.6
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 8.1e-18 94.4 76 65.8
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 6.4e-15 84.7 45 82.2
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 1.9e-14 83.2 88 51.1
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 3.0e-12 75.9 70 58.6
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 3.8e-07 58.9 67 43.3


User provided reference genes

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