Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G071300 Glycine max HOM05D000095 ORTHO05D212081 1.5e-42 176.0 102 100.0
Glyma.04G177300 Glycine max HOM05D000095 ORTHO05D000393 7.8e-20 100.5 67 83.6
Glyma.06G187600 Glycine max HOM05D000095 ORTHO05D000393 7.8e-20 100.5 81 74.1
VMungo1309G1167 Vigna mungo HOM05D000095 ORTHO05D000393 2.1e-17 92.4 83 67.5
Lalb_Chr12g0201271 Lupinus albus HOM05D000095 ORTHO05D000393 5.2e-16 87.8 72 69.4
Phvul.009G183300 Phaseolus vulgaris HOM05D000095 ORTHO05D000393 8.9e-16 87.0 81 67.9
Lj4g0016998 Lotus japonicus HOM05D000095 ORTHO05D000393 1.2e-15 86.7 74 67.6
TPR.G38375 Trifolium pratense HOM05D000095 ORTHO05D000393 1.2e-15 86.7 73 67.1
arahy.Tifrunner.gnm1.ann1.6QA0V6 Arachis hypogaea HOM05D000095 ORTHO05D000393 3.4e-15 85.1 72 65.3
Psat4g055040 Pisum sativum HOM05D000095 ORTHO05D000393 3.4e-15 85.1 76 63.2
Glyma.05G032200 Glycine max HOM05D000095 ORTHO05D000393 4.4e-15 84.7 72 66.7
arahy.Tifrunner.gnm1.ann1.ACH06T Arachis hypogaea HOM05D000095 ORTHO05D000393 1.3e-14 83.2 72 65.3
Ca_21872_v3 Cicer arietinum L. HOM05D000095 ORTHO05D000393 1.7e-14 82.8 74 63.5
Glyma.17G094400 Glycine max HOM05D000095 ORTHO05D000393 2.9e-14 82.0 69 66.7
Lalb_Chr07g0182461 Lupinus albus HOM05D000095 ORTHO05D000393 8.3e-14 80.5 70 64.3
Phvul.003G195700 Phaseolus vulgaris HOM05D000095 ORTHO05D000393 1.6e-12 76.3 76 57.9
VMungo1215G2239 Vigna mungo HOM05D000095 ORTHO05D000393 2.0e-12 75.9 70 61.4
Dinv07990 Davidia involucrata HOM05D000095 ORTHO05D000393 2.3e-11 72.4 67 64.2
Medtr4g107230 Medicago truncatula HOM05D000095 ORTHO05D000393 3.9e-11 71.6 75 58.7
Lalb_Chr13g0298041 Lupinus albus HOM05D000095 ORTHO05D000393 5.0e-11 71.2 70 58.6
Cpa.g.sc35.12 Carica papaya HOM05D000095 ORTHO05D000393 8.6e-11 70.5 76 55.3
Gohir.A11G028100 Gossypium hirsutum HOM05D000095 ORTHO05D000393 1.9e-10 69.3 71 60.6
Hma1.2p1_0002F.1_g002980 Hydrangea macrophylla HOM05D000095 ORTHO05D000393 2.5e-10 68.9 70 57.1
SalBow5G0123 Salvia bowleyana HOM05D000095 ORTHO05D000393 2.5e-10 68.9 70 58.6
Gorai.007G034000 Gossypium raimondii HOM05D000095 ORTHO05D000393 4.3e-10 68.2 71 59.2
Actinidia37683 Actinidia chinensis HOM05D000095 ORTHO05D000393 7.3e-10 67.4 70 57.1
ClCG06G016600 Citrullus lanatus HOM05D000095 ORTHO05D000393 7.3e-10 67.4 78 55.1
Dinv13120 Davidia involucrata HOM05D000095 ORTHO05D000393 7.3e-10 67.4 69 59.4
MELO3C017134.2 Cucumis melo HOM05D000095 ORTHO05D000393 9.5e-10 67.0 79 54.4
CsaV3_1G001910 Cucumis sativus L. HOM05D000095 ORTHO05D000393 9.5e-10 67.0 79 54.4
Duzib068G1308 Durio zibethinus HOM05D000095 ORTHO05D000393 9.5e-10 67.0 76 55.3
Duzib084G1313 Durio zibethinus HOM05D000095 ORTHO05D000393 9.5e-10 67.0 70 60.0
Aa31LG4G5050 Aethionema arabicum HOM05D000095 ORTHO05D000393 1.2e-09 66.6 77 54.5
Gohir.D11G031100 Gossypium hirsutum HOM05D000095 ORTHO05D000393 1.2e-09 66.6 71 57.7
Sed0021603 Sechium edule HOM05D000095 ORTHO05D000393 1.2e-09 66.6 74 56.8
Thecc.03G071600 Theobroma cacao HOM05D000095 ORTHO05D000393 1.2e-09 66.6 78 55.1
BcaC07g38970 Brassica carinata HOM05D000095 ORTHO05D000393 1.6e-09 66.2 69 60.9
C08p19090 Brassica napus HOM05D000095 ORTHO05D000393 1.6e-09 66.2 69 60.9
BolC8t49533H Brassica oleracea HOM05D000095 ORTHO05D000393 1.6e-09 66.2 69 60.9
BraA08t34942Z Brassica rapa HOM05D000095 ORTHO05D000393 1.6e-09 66.2 69 60.9
CiPaw.11G034200 Carya illinoinensis HOM05D000095 ORTHO05D000393 2.1e-09 65.9 85 49.4
Haze_07408 Corylus avellana HOM05D000095 ORTHO05D000393 2.1e-09 65.9 76 55.3
Haze_07416 Corylus avellana HOM05D000095 ORTHO05D000393 2.1e-09 65.9 76 55.3
Nitab4.5_0000642g0170 Nicotiana tabacum HOM05D000095 ORTHO05D000393 2.1e-09 65.9 77 53.2
vmacro19343 Vaccinium macrocarpon HOM05D000095 ORTHO05D000393 2.1e-09 65.9 71 53.5
Actinidia04947 Actinidia chinensis HOM05D000095 ORTHO05D000393 2.8e-09 65.5 65 60.0
Lj1g0008786 Lotus japonicus HOM05D000095 ORTHO05D000393 3.6e-09 65.1 71 63.4
Nitab4.5_0002875g0030 Nicotiana tabacum HOM05D000095 ORTHO05D000393 4.7e-09 64.7 79 51.9
Prupe.5G182000 Prunus persica HOM05D000095 ORTHO05D000393 4.7e-09 64.7 75 53.3
TWI81G0830 Tripterygium wilfordii HOM05D000095 ORTHO05D000393 4.7e-09 64.7 78 52.6
MELO3C002228.2 Cucumis melo HOM05D000095 ORTHO05D000393 6.2e-09 64.3 83 50.6
CsaV3_1G008110 Cucumis sativus L. HOM05D000095 ORTHO05D000393 6.2e-09 64.3 83 50.6
FAN04G2138 Fragaria x ananassa HOM05D000095 ORTHO05D000393 6.2e-09 64.3 70 57.1
Manes.06G099100 Manihot esculenta HOM05D000095 ORTHO05D000393 6.2e-09 64.3 77 51.9
BraA09t41333Z Brassica rapa HOM05D000095 ORTHO05D000393 8.0e-09 63.9 73 57.5
Duzib205G1048 Durio zibethinus HOM05D000095 ORTHO05D000393 8.0e-09 63.9 80 52.5
Eucgr.K02897 Eucalyptus grandis HOM05D000095 ORTHO05D000393 8.0e-09 63.9 75 56.0
FAN13G2625 Fragaria x ananassa HOM05D000095 ORTHO05D000393 8.0e-09 63.9 71 57.7
Gohir.D03G089800 Gossypium hirsutum HOM05D000095 ORTHO05D000393 8.0e-09 63.9 77 53.2
Gorai.003G071500 Gossypium raimondii HOM05D000095 ORTHO05D000393 8.0e-09 63.9 77 53.2
GSVIVG01007843001 Vitis vinifera HOM05D000095 ORTHO05D000393 8.0e-09 63.9 61 63.9
CSS0043992 Camellia sinensis var. sinensis HOM05D000095 ORTHO05D000393 1.1e-08 63.5 72 52.8
Lj5A119T38 Lonicera japonica HOM05D000095 ORTHO05D000393 1.1e-08 63.5 74 52.7
MD14G1189300 Malus domestica HOM05D000095 ORTHO05D000393 1.1e-08 63.5 76 52.6
Solyc03g113620.3 Solanum lycopersicum HOM05D000095 ORTHO05D000393 1.1e-08 63.5 76 53.9
Sopen03g032660 Solanum pennellii HOM05D000095 ORTHO05D000393 1.1e-08 63.5 76 53.9
CAN.G853.40 Capsicum annuum HOM05D000095 ORTHO05D000393 1.4e-08 63.2 74 52.7
MD06G1183300 Malus domestica HOM05D000095 ORTHO05D000393 1.4e-08 63.2 76 52.6
Sed0001396 Sechium edule HOM05D000095 ORTHO05D000393 1.4e-08 63.2 73 54.8
BcaC08g46949 Brassica carinata HOM05D000095 ORTHO05D000393 1.8e-08 62.8 70 52.9
FvH4_5g16170 Fragaria vesca HOM05D000095 ORTHO05D000393 1.8e-08 62.8 74 54.1
FAN18G3501 Fragaria x ananassa HOM05D000095 ORTHO05D000393 1.8e-08 62.8 74 54.1
Gohir.A03G076000 Gossypium hirsutum HOM05D000095 ORTHO05D000393 1.8e-08 62.8 77 51.9
QL10p013979 Quercus lobata HOM05D000095 ORTHO05D000393 1.8e-08 62.8 84 50.0
SalBow3G0068 Salvia bowleyana HOM05D000095 ORTHO05D000393 1.8e-08 62.8 71 59.2
Hund10555 Selenicereus undatus HOM05D000095 ORTHO05D000393 1.8e-08 62.8 76 56.6
Actinidia19068 Actinidia chinensis HOM05D000095 ORTHO05D000393 2.3e-08 62.4 64 60.9
Cfa019041 Carpinus fangiana HOM05D000095 ORTHO05D000393 2.3e-08 62.4 80 51.2
FAN08G1412 Fragaria x ananassa HOM05D000095 ORTHO05D000393 2.3e-08 62.4 75 53.3
Nitab4.5_0000003g0210 Nicotiana tabacum HOM05D000095 ORTHO05D000393 2.3e-08 62.4 67 56.7
Sed0019616 Sechium edule HOM05D000095 ORTHO05D000393 2.3e-08 62.4 86 51.2
Actinidia34969 Actinidia chinensis HOM05D000095 ORTHO05D000393 3.1e-08 62.0 60 58.3
C08p42850 Brassica napus HOM05D000095 ORTHO05D000393 3.1e-08 62.0 79 53.2
ClCG01G014200 Citrullus lanatus HOM05D000095 ORTHO05D000393 3.1e-08 62.0 83 48.2
Sed0019379 Sechium edule HOM05D000095 ORTHO05D000393 3.1e-08 62.0 89 50.6
PGSC0003DMG400024572 Solanum tuberosum HOM05D000095 ORTHO05D000393 3.1e-08 62.0 74 51.4
BcaC08g46906 Brassica carinata HOM05D000095 ORTHO05D000393 4.0e-08 61.6 72 50.0
BcaC08g46907 Brassica carinata HOM05D000095 ORTHO05D000393 4.0e-08 61.6 72 50.0
A07p40480 Brassica napus HOM05D000095 ORTHO05D000393 4.0e-08 61.6 72 50.0
A08p30070 Brassica napus HOM05D000095 ORTHO05D000393 4.0e-08 61.6 69 58.0
C06p48850 Brassica napus HOM05D000095 ORTHO05D000393 4.0e-08 61.6 72 50.0
BolC6t39921H Brassica oleracea HOM05D000095 ORTHO05D000393 4.0e-08 61.6 72 50.0
BraA07t31591Z Brassica rapa HOM05D000095 ORTHO05D000393 4.0e-08 61.6 72 50.0
CARHR068150 Cardamine hirsuta HOM05D000095 ORTHO05D000393 4.0e-08 61.6 72 52.8
SGA_v2.0_scaffold25G10859 Striga asiatica HOM05D000095 ORTHO05D000393 4.0e-08 61.6 84 51.2
THA.LOC104808319 Tarenaya hassleriana HOM05D000095 ORTHO05D000393 4.0e-08 61.6 76 51.3
THA.LOC104813861 Tarenaya hassleriana HOM05D000095 ORTHO05D000393 4.0e-08 61.6 79 50.6
CANSAT80G0292 Cannabis sativa HOM05D000095 ORTHO05D000393 5.2e-08 61.2 97 42.3
CiPaw.12G022200 Carya illinoinensis HOM05D000095 ORTHO05D000393 5.2e-08 61.2 84 50.0
Thhalv10018822m.g Eutrema salsugineum HOM05D000095 ORTHO05D000393 5.2e-08 61.2 72 54.2
THA.LOC104809231 Tarenaya hassleriana HOM05D000095 ORTHO05D000393 5.2e-08 61.2 80 50.0
MSTRG.23080 Avicennia marina HOM05D000095 ORTHO05D000393 6.8e-08 60.8 76 51.3
Nitab4.5_0021887g0010 Nicotiana tabacum HOM05D000095 ORTHO05D000393 6.8e-08 60.8 67 55.2
Sp5g29970 Schrenkiella parvula HOM05D000095 ORTHO05D000393 6.8e-08 60.8 75 50.7
MSTRG.11433 Avicennia marina HOM05D000095 ORTHO05D000393 8.9e-08 60.5 75 52.0
TWI60G0046 Tripterygium wilfordii HOM05D000095 ORTHO05D000393 8.9e-08 60.5 74 51.4
HanXRQChr08g0236891 Helianthus annuus HOM05D000095 ORTHO05D000393 2.0e-07 59.3 64 60.9
Lsat_1_v5_gn_5_17481 Lactuca sativa HOM05D000095 ORTHO05D000393 2.0e-07 59.3 74 52.7
TWI15G0941 Tripterygium wilfordii HOM05D000095 ORTHO05D000393 2.0e-07 59.3 74 51.4
BcaC07g41278 Brassica carinata HOM05D000095 ORTHO05D000393 3.4e-07 58.5 79 51.9
A09p59560 Brassica napus HOM05D000095 ORTHO05D000393 3.4e-07 58.5 71 56.3
Sc04g0002240 Simmondsia chinensis HOM05D000095 ORTHO05D000393 3.4e-07 58.5 77 53.2
CAN.G628.61 Capsicum annuum HOM05D000095 ORTHO05D000393 4.4e-07 58.2 72 54.2
BolC8t51840H Brassica oleracea HOM05D000095 ORTHO05D000393 5.8e-07 57.8 90 46.7
AUR62042362 Chenopodium quinoa HOM05D002466 ORTHO05D002668 5.8e-07 57.8 61 54.1
Oeu034671.1 Olea europaea HOM05D000095 ORTHO05D000393 5.8e-07 57.8 75 49.3
TAR374G1699 Trochodendron aralioides HOM05D000095 ORTHO05D000393 5.8e-07 57.8 61 62.3
Ciclev10021454m.g Citrus clementina HOM05D000095 ORTHO05D000393 7.5e-07 57.4 79 50.6
Eucgr.B00377 Eucalyptus grandis HOM05D000095 ORTHO05D000393 7.5e-07 57.4 78 51.3
RcHm_v2.0_Chr7g0179981 Rosa chinensis HOM05D000095 ORTHO05D000393 7.5e-07 57.4 73 50.7
TAR622G0298 Trochodendron aralioides HOM05D000095 ORTHO05D000393 7.5e-07 57.4 61 60.7
unitig_26.g8793 Utricularia gibba HOM05D000095 ORTHO05D000393 7.5e-07 57.4 55 60.0
AL2G34720 Arabidopsis lyrata HOM05D000095 ORTHO05D000393 9.8e-07 57.0 72 50.0
Hund09395 Selenicereus undatus HOM05D000095 ORTHO05D000393 9.8e-07 57.0 76 50.0
Sopen06g027540 Solanum pennellii HOM05D000095 ORTHO05D000393 9.8e-07 57.0 72 50.0
PGSC0003DMG400033030 Solanum tuberosum HOM05D000095 ORTHO05D000393 9.8e-07 57.0 72 50.0
MSTRG.9656 Avicennia marina HOM05D000095 ORTHO05D000393 1.3e-06 56.6 75 52.0
BcaB03g12943 Brassica carinata HOM05D000095 ORTHO05D000393 1.3e-06 56.6 77 50.6
Duzib248G0490 Durio zibethinus HOM05D000095 ORTHO05D000393 1.3e-06 56.6 63 54.0
Duzib251G0069 Durio zibethinus HOM05D000095 ORTHO05D000393 1.3e-06 56.6 56 62.5
Manes.14G071900 Manihot esculenta HOM05D000095 ORTHO05D000393 1.3e-06 56.6 89 42.7
SGA_v2.0_scaffold467G52048 Striga asiatica HOM05D000095 ORTHO05D000393 1.3e-06 56.6 87 47.1
vmacro16578 Vaccinium macrocarpon HOM05D000095 ORTHO05D000393 1.3e-06 56.6 68 51.5
Solyc06g071230.3 Solanum lycopersicum HOM05D000095 ORTHO05D000393 1.7e-06 56.2 74 48.6
Lj9P455T45 Lonicera japonica HOM05D000095 ORTHO05D000393 2.2e-06 55.8 63 58.7
PGR044G0623 Punica granatum HOM05D000095 ORTHO05D000393 2.2e-06 55.8 33 81.8
BcaC03g15530 Brassica carinata HOM05D000095 ORTHO05D000393 2.9e-06 55.5 74 47.3
A02p19580 Brassica napus HOM05D000095 ORTHO05D000393 2.9e-06 55.5 74 48.6
C02p32120 Brassica napus HOM05D000095 ORTHO05D000393 2.9e-06 55.5 74 47.3
BolC2t09248H Brassica oleracea HOM05D000095 ORTHO05D000393 2.9e-06 55.5 74 47.3
MBI15_g13303_MAGBIO Magnolia biondii HOM05D000095 ORTHO05D000393 2.9e-06 55.5 65 58.5
Oeu053750.1 Olea europaea HOM05D000095 ORTHO05D000393 2.9e-06 55.5 102 43.1
Thecc.02G238000 Theobroma cacao HOM05D000095 ORTHO05D000393 3.7e-06 55.1 56 60.7
Lsat_1_v5_gn_4_74361 Lactuca sativa HOM05D000095 ORTHO05D000393 4.9e-06 54.7 77 49.4
Sc12g0005840 Simmondsia chinensis HOM05D000095 ORTHO05D000393 4.9e-06 54.7 56 58.9
Carub.0002s2162 Capsella rubella HOM05D000095 ORTHO05D000393 8.3e-06 53.9 77 45.5
Ciclev10030461m.g Citrus clementina HOM05D000095 ORTHO05D000393 8.3e-06 53.9 38 71.1


User provided reference genes

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