Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 0.0e+00 1955.3 988 100.0
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 0.0e+00 1142.1 979 65.0
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 4.3e-301 1038.1 994 59.9
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 5.9e-298 1027.7 1005 58.8
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 6.3e-292 1007.7 989 58.1
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 2.2e-289 999.2 1011 57.5
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 1.4e-275 953.4 660 74.1
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 2.2e-273 946.0 996 54.9
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 5.5e-272 941.4 1052 52.9
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 1.4e-270 936.8 1058 52.6
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 2.6e-237 826.2 896 54.2
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 1.2e-234 817.4 1031 49.1
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 1.2e-221 774.2 1037 47.7
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 1.2e-218 764.2 1019 48.3
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 3.6e-207 726.1 1010 45.1
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 8.4e-204 714.9 1023 45.2
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 1.1e-203 714.5 1014 45.2
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 4.6e-202 709.1 1021 45.5
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 6.0e-202 708.8 1027 45.4
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 1.8e-198 697.2 1008 44.5
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 7.6e-197 691.8 1028 44.6
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 2.9e-196 689.9 1019 44.5
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 5.1e-193 679.1 1005 44.4
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 1.6e-191 674.1 1071 43.6
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 3.1e-190 669.8 1023 44.0
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 5.3e-190 669.1 1027 44.8
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 7.6e-189 665.2 1027 43.8
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.9e-188 663.3 1030 43.9
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.8e-188 662.9 1026 43.9
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 5.0e-188 662.5 1019 44.4
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 9.3e-187 658.3 1025 44.0
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 7.9e-186 655.2 1019 44.3
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 1.9e-184 650.6 1010 43.3
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 1.6e-183 647.5 1042 43.2
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 1.8e-182 644.0 1008 43.8
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 2.9e-172 610.1 900 44.1
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 1.9e-171 607.4 960 42.6
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 1.7e-164 584.3 1020 39.6
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 8.5e-164 582.0 1024 39.9
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.8e-159 567.0 1016 40.3
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 1.2e-157 561.6 1006 40.1
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 2.7e-157 560.5 869 42.0
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 5.9e-157 559.3 979 39.5
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 2.9e-156 557.0 1017 39.7
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 8.0e-154 548.9 1019 39.1
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.2e-152 545.0 1017 39.4
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 3.4e-152 543.5 1021 40.0
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 4.8e-151 539.7 828 42.5
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 4.8e-151 539.7 1023 38.4
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.1e-150 538.5 796 42.8
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 2.4e-150 537.3 1036 38.4
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 1.3e-148 531.6 1014 38.9
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 3.8e-148 530.0 1015 38.1
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 8.5e-148 528.9 1025 38.0
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 6.8e-145 519.2 1008 38.4
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 9.8e-144 515.4 1010 37.4
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 1.0e-140 505.4 1007 36.8
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 6.6e-140 502.7 1033 36.5
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 7.3e-139 499.2 1013 36.5
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 9.5e-139 498.8 1012 36.6
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 1.6e-138 498.0 1027 36.9
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.6e-138 498.0 1034 36.8
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 6.1e-138 496.1 900 39.2
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 6.1e-138 496.1 1026 36.5
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 1.8e-137 494.6 1001 37.3
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 8.9e-137 492.3 1001 37.4
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 1.2e-136 491.9 996 37.3
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 1.5e-136 491.5 1003 38.2
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 2.0e-136 491.1 1009 38.7
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 2.2e-135 487.6 995 37.3
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 6.4e-135 486.1 1020 37.7
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 3.2e-134 483.8 1006 35.3
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 7.8e-133 479.2 1001 35.4
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.0e-132 478.8 1010 36.5
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.3e-132 478.4 1004 36.9
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 1.3e-132 478.4 1011 36.7
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 4.3e-131 473.4 1022 36.0
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 2.8e-130 470.7 999 36.8
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 3.6e-130 470.3 1020 36.3
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 4.7e-130 469.9 1007 36.0
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 8.0e-130 469.2 791 41.1
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 1.4e-129 468.4 1011 35.4
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 2.0e-128 464.5 1021 36.5
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 2.2e-127 461.1 1022 35.9
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 2.2e-127 461.1 1022 35.9
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 8.3e-127 459.1 1023 35.0
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 1.1e-126 458.8 1025 36.0
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 5.4e-126 456.4 1025 36.0
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 6.6e-124 449.5 1027 35.9
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 8.6e-124 449.1 1017 35.3
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 2.3e-121 441.0 1023 36.0
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 3.2e-118 430.6 468 55.3
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 5.2e-113 413.3 1006 34.2
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 2.2e-111 407.9 890 34.9
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 2.0e-104 384.8 995 32.8
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.8e-98 364.4 921 33.9
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 4.0e-97 360.5 936 32.8
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 5.3e-97 360.1 1046 31.5
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 2.1e-85 321.6 967 31.7
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 7.9e-85 319.7 1034 31.7
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 1.9e-83 315.1 621 36.1
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 5.6e-83 313.5 904 31.2
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 2.6e-80 304.7 1022 29.4
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 3.4e-80 304.3 603 37.8
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 8.4e-79 299.7 484 44.0
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 2.5e-75 288.1 472 41.9
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 4.5e-72 277.3 411 43.1
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.9e-67 261.9 484 40.5
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 2.4e-65 255.0 620 31.6
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.9e-62 245.4 378 44.2
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 3.7e-58 231.1 1073 27.1
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 1.1e-54 219.5 992 26.8
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 9.1e-49 199.9 248 51.6
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 9.1e-49 199.9 950 26.4
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 3.0e-44 184.9 319 40.1
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 3.6e-37 161.4 311 40.2
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 1.4e-36 159.5 251 45.0
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 4.1e-33 147.9 369 33.9
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 6.5e-31 140.6 309 37.2
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 3.3e-30 138.3 791 24.7
MBI16_g03131_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 8.9e-28 130.2 482 29.5
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 3.9e-15 88.2 220 33.6
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 3.6e-13 81.6 313 24.9
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 4.9e-10 71.2 124 38.7
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 1.1e-09 70.1 342 26.6
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 3.2e-09 68.6 92 56.5


User provided reference genes

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