Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 5.3e-135 484.6 285 100.0
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 8.9e-114 414.1 280 88.6
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 4.7e-99 365.2 283 79.2
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 4.1e-95 352.1 285 79.3
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 1.3e-88 330.5 279 72.8
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 3.2e-87 325.9 287 71.4
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 3.2e-87 325.9 276 67.0
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 3.0e-85 319.3 286 70.6
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 5.1e-85 318.5 277 70.0
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 1.9e-84 316.6 281 70.5
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 9.6e-76 287.7 285 58.6
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 9.0e-74 281.2 273 60.8
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 2.9e-72 276.2 272 60.7
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 4.9e-72 275.4 279 59.9
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 1.6e-70 270.4 275 59.3
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 3.5e-70 269.2 284 62.0
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 1.7e-69 266.9 273 54.9
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 2.5e-68 263.1 290 55.2
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 5.6e-68 261.9 285 56.5
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 7.3e-68 261.5 292 54.5
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 9.6e-68 261.2 282 54.6
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 3.6e-67 259.2 285 54.4
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.8e-66 256.9 281 58.4
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 1.2e-65 254.2 286 54.2
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 4.5e-65 252.3 275 53.5
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 4.9e-64 248.8 283 51.2
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 1.1e-63 247.7 274 56.6
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.1e-63 247.7 306 51.3
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 1.4e-63 247.3 274 55.1
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 3.2e-63 246.1 274 57.7
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 5.4e-63 245.4 280 51.1
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 7.1e-63 245.0 276 53.6
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 2.1e-62 243.4 282 54.3
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 2.7e-62 243.0 292 60.3
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 1.0e-61 241.1 268 59.7
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 1.0e-61 241.1 271 52.8
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 2.3e-61 240.0 274 57.3
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 3.0e-61 239.6 279 52.3
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 3.0e-61 239.6 273 53.5
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 3.9e-61 239.2 272 53.3
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 1.1e-60 237.7 291 53.6
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.1e-60 237.7 293 56.0
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 1.5e-60 237.3 274 52.9
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 1.5e-60 237.3 271 53.1
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 9.6e-60 234.6 292 49.0
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.3e-59 234.2 271 49.8
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 3.7e-59 232.6 266 55.3
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 3.7e-59 232.6 272 61.8
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 6.2e-59 231.9 271 57.9
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 6.2e-59 231.9 271 58.3
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 1.1e-58 231.1 272 58.1
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 1.4e-58 230.7 275 53.8
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 1.8e-58 230.3 288 49.3
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 3.4e-57 226.1 250 56.4
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 4.5e-57 225.7 276 50.4
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 7.6e-57 224.9 296 52.0
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 7.6e-57 224.9 279 51.6
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 6.4e-56 221.9 273 49.5
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 8.4e-56 221.5 277 48.4
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 1.1e-55 221.1 284 58.1
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 3.2e-55 219.5 284 49.3
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 3.2e-55 219.5 274 49.3
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 4.2e-55 219.2 295 46.4
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 5.5e-55 218.8 244 53.7
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 7.9e-54 214.9 278 47.5
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 7.9e-54 214.9 282 58.5
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 1.0e-53 214.5 284 51.1
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 1.8e-53 213.8 284 48.9
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 1.8e-53 213.8 275 50.5
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 6.7e-53 211.8 272 56.2
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 8.7e-53 211.5 283 50.9
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 1.1e-52 211.1 254 50.8
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 4.3e-52 209.1 316 46.2
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 5.6e-52 208.8 235 54.0
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 1.3e-51 207.6 278 48.9
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 8.2e-51 204.9 248 51.2
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 6.9e-50 201.8 250 56.0
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 6.9e-50 201.8 277 48.7
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 5.8e-49 198.7 294 49.7
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 5.8e-49 198.7 317 48.6
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.7e-48 197.2 246 59.8
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 2.2e-48 196.8 276 46.0
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 1.1e-47 194.5 243 51.4
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.4e-47 194.1 248 58.5
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 4.2e-47 192.6 272 49.6
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 4.2e-47 192.6 271 49.4
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 1.6e-46 190.7 247 57.1
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 2.1e-46 190.3 281 44.8
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 2.7e-46 189.9 239 57.3
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 2.7e-46 189.9 279 43.0
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 3.5e-46 189.5 279 55.2
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 3.5e-46 189.5 270 44.4
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 6.0e-46 188.7 245 55.9
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 7.9e-46 188.3 266 56.8
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 7.9e-46 188.3 280 42.1
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 1.0e-45 188.0 286 51.4
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 3.0e-45 186.4 245 56.3
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 3.0e-45 186.4 287 50.5
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 3.0e-45 186.4 276 43.1
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 3.9e-45 186.0 242 54.1
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 6.7e-45 185.3 275 53.8
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 6.7e-45 185.3 276 42.0
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.1e-44 184.5 270 42.6
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 1.1e-44 184.5 244 52.5
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 1.1e-44 184.5 231 53.2
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 1.9e-44 183.7 245 53.5
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 3.3e-44 183.0 261 49.4
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 7.4e-44 181.8 265 42.6
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 1.6e-43 180.6 288 48.3
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 1.6e-43 180.6 276 45.7
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 2.2e-43 180.3 280 41.4
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 2.8e-43 179.9 245 52.7
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 2.8e-43 179.9 230 47.0
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 2.8e-43 179.9 280 41.8
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 2.4e-42 176.8 271 40.2
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 3.1e-42 176.4 273 40.7
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 1.5e-41 174.1 264 40.2
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 2.0e-41 173.7 285 40.4
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 2.6e-41 173.3 101 76.2
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 4.5e-41 172.6 248 53.2
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 1.3e-40 171.0 140 60.0
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 2.2e-40 170.2 282 39.4
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.4e-39 167.5 289 38.4
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 5.5e-39 165.6 116 64.7
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 5.7e-36 155.6 262 43.5
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 6.3e-35 152.1 235 40.9
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 1.4e-34 151.0 101 72.3
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 5.3e-34 149.1 282 37.6
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.9e-31 140.6 107 62.6
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 1.6e-30 137.5 258 34.9
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 1.1e-28 131.3 282 33.7
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 1.5e-28 131.0 127 52.8
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 2.0e-28 130.6 101 58.4
HPP92_008082 Vanilla planifolia HOM05D004782 ORTHO05D005498 2.6e-28 130.2 272 35.7
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 3.3e-28 129.8 101 57.4
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 3.3e-28 129.8 101 57.4
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 4.5e-25 119.4 302 31.5
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 5.9e-25 119.0 258 33.3
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 7.7e-25 118.6 100 62.0
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 1.0e-24 118.2 89 60.7
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 2.9e-24 116.7 282 36.9
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 3.8e-24 116.3 84 61.9
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 5.0e-24 115.9 98 54.1
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.1e-23 114.8 85 60.0
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 3.2e-23 113.2 86 58.1
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 9.4e-23 111.7 288 35.4
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 3.6e-22 109.8 92 55.4
Gohir.A04G046350 Gossypium hirsutum HOM05D004782 ORTHO05D005498 2.6e-20 103.6 80 63.8
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 5.7e-20 102.4 86 54.7
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 1.8e-18 97.4 292 30.5
CDE06G1742 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.2e-12 78.2 129 40.3
Lj7A601G104 Lonicera japonica HOM05D004782 ORTHO05D005498 1.2e-12 78.2 201 32.3
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 3.7e-11 73.2 334 24.6
Aqoxy3G01251 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 4.1e-10 69.7 79 46.8
MD10G1172000 Malus domestica HOM05D004782 ORTHO05D005498 5.3e-10 69.3 75 57.3
Actinidia35780 Actinidia chinensis HOM05D004782 ORTHO05D005498 1.9e-07 60.8 40 67.5
BcaB05g25091 Brassica carinata HOM05D000186 ORTHO05D005498 1.2e-06 58.2 94 40.4
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 1.6e-06 57.8 50 60.0


User provided reference genes

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