Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 2214.1 1165 100.0
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 2163.3 1165 97.1
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 2129.4 1165 94.0
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 2117.4 1165 94.1
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 2086.2 1165 91.6
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 2075.4 1165 92.2
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 2074.3 1165 91.7
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 2072.4 1165 92.2
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 2062.7 1165 91.6
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 2040.4 1165 91.6
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 2035.0 1176 90.7
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1981.8 1176 86.8
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1979.5 1177 86.5
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1968.7 1170 87.0
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1966.0 1170 85.6
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1963.3 1177 86.2
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1962.6 1167 87.0
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1961.4 1171 86.1
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1960.7 1169 86.6
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1960.3 1170 86.2
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1960.3 1168 86.8
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1959.9 1165 86.6
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1958.7 1165 84.9
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1952.6 1176 86.1
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1949.5 1178 85.7
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1947.6 1171 85.6
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1945.2 1170 85.9
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1944.9 1168 85.1
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1942.2 1168 85.9
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1941.4 1171 85.9
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1939.1 1173 85.7
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1939.1 1178 85.1
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1935.6 1175 85.5
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1935.2 1175 85.5
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1934.1 1168 85.5
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1932.9 1175 85.4
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1932.5 1169 84.5
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1932.5 1168 84.9
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1926.0 1172 85.0
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1921.4 1172 84.3
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1921.0 1169 85.1
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1172 85.0
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1207 82.7
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1172 83.6
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1916.4 1179 84.1
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1916.0 1170 84.8
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1915.6 1172 85.4
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1915.2 1177 83.1
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1913.3 1173 84.2
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1169 83.7
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1169 83.7
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1906.0 1168 83.9
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1904.8 1199 83.1
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1904.0 1182 83.5
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1903.3 1167 84.3
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1902.5 1094 87.1
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1902.1 1173 83.8
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1901.7 1181 83.4
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1900.9 1176 83.9
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1899.0 1168 83.3
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1898.6 1178 83.8
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1898.2 1178 83.5
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1897.1 1173 82.6
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1895.6 1173 82.7
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1895.2 1170 83.7
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1894.8 1168 83.3
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1894.4 1179 82.7
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1894.0 1174 83.5
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1894.0 1174 83.5
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1893.6 1192 82.6
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1893.2 1214 80.6
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1889.4 1170 83.5
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1888.2 1169 84.9
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1880.9 1186 82.0
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1877.4 1183 81.9
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1874.8 1172 83.3
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1873.6 1166 83.1
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1869.0 1165 82.9
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1867.8 1210 80.1
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1863.6 1165 79.9
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1856.3 1099 84.0
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1855.1 1169 81.6
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1853.6 1171 81.0
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1845.9 1156 82.8
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1835.5 1173 82.1
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1829.3 1099 83.2
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1816.2 1177 80.7
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1798.1 1197 80.1
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1772.3 1328 71.8
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1765.7 1178 77.1
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1765.0 1165 75.9
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1747.6 1172 74.7
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1716.4 1164 75.5
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1709.5 1153 76.1
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1680.6 1168 73.5
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1663.7 941 91.7
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1617.1 1166 70.2
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1609.7 1167 70.3
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1603.2 1155 75.5
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1598.2 996 82.0
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1453.3 851 86.7
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1427.2 1158 64.3
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1417.1 1162 62.0
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1405.2 842 84.1
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1366.3 1159 61.4
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1361.7 1160 61.4
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1348.2 1177 60.4
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1345.5 802 84.3
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1264.6 801 78.8
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1208.7 784 77.6
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1095.5 699 80.0
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1084.3 918 60.1
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 1.9e-303 1046.2 1106 48.4
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 5.9e-297 1024.6 652 80.8
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 4.8e-283 978.4 580 86.9
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.9e-280 969.1 591 83.2
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 4.2e-279 965.3 745 69.1
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.5e-271 939.5 550 87.3
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.0e-269 932.6 601 80.2
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 3.7e-259 899.0 526 82.7
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 5.9e-257 891.7 627 72.2
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 1.7e-216 757.3 465 84.5
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 5.6e-215 752.3 465 78.9
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 3.5e-209 733.0 395 90.4
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 2.9e-163 580.5 361 85.0
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 5.9e-148 529.6 354 79.4
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 9.5e-114 416.0 382 56.0
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 6.0e-108 396.7 276 73.2
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 7.6e-87 326.6 195 82.6
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 2.2e-62 245.4 171 77.8
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.3e-43 182.2 117 83.8
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 2.3e-43 182.2 147 68.0
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 3.5e-39 168.3 103 84.5
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 5.9e-39 167.5 109 80.7
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 1.4e-35 156.4 78 92.3
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 8.8e-35 153.7 87 85.1
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 1.2e-31 143.3 96 79.2
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 4.4e-18 98.2 109 49.5
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.7e-17 96.3 81 59.3
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 4.1e-16 91.7 51 82.4
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 5.4e-16 91.3 86 61.6
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 7.0e-16 90.9 94 78.7
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.7e-15 89.0 51 78.4
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 3.5e-15 88.6 51 80.4
TAR381G0591 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.0e-06 60.5 37 73.0
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 1.7e-06 59.7 329 25.5
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 6.6e-06 57.8 57 52.6


User provided reference genes

Program Settings