Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 1.4e-105 386.3 202 100.0
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 2.7e-85 318.9 181 91.2
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 1.7e-79 299.7 181 86.2
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 2.4e-73 279.3 181 79.6
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 2.4e-73 279.3 182 79.7
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 2.3e-71 272.7 182 76.9
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 1.5e-70 270.0 182 76.9
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 1.4e-68 263.5 174 78.7
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 4.0e-68 261.9 176 75.6
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 7.5e-67 257.7 181 76.2
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 9.8e-67 257.3 180 72.2
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 1.4e-65 253.4 181 70.2
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 1.2e-64 250.4 172 72.1
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 2.0e-64 249.6 179 70.9
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 1.7e-63 246.5 176 70.5
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 2.3e-63 246.1 180 70.6
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 5.0e-63 245.0 176 70.5
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 6.6e-63 244.6 180 68.3
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 3.3e-62 242.3 177 69.5
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 4.3e-62 241.9 176 69.3
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 4.3e-62 241.9 177 69.5
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 7.3e-62 241.1 178 69.1
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 1.2e-61 240.4 176 69.9
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 1.6e-61 240.0 175 72.0
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 2.8e-61 239.2 173 70.5
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 4.7e-61 238.4 177 67.8
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 2.3e-60 236.1 170 70.0
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 3.1e-60 235.7 176 67.6
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 4.0e-60 235.3 172 65.7
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 4.0e-60 235.3 176 67.6
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 6.8e-60 234.6 178 67.4
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 8.9e-60 234.2 180 65.6
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 8.9e-60 234.2 183 65.0
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 1.2e-59 233.8 172 68.6
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 1.2e-59 233.8 179 65.9
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 1.2e-59 233.8 179 65.4
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 1.2e-59 233.8 175 66.9
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 1.5e-59 233.4 169 70.4
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 5.8e-59 231.5 174 67.2
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 7.5e-59 231.1 180 66.1
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 9.8e-59 230.7 171 69.0
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 9.8e-59 230.7 189 63.5
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 1.3e-58 230.3 174 66.1
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 1.7e-58 229.9 179 64.8
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 2.2e-58 229.6 179 65.4
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 2.2e-58 229.6 176 63.1
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 2.9e-58 229.2 174 67.2
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 3.7e-58 228.8 172 66.3
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 4.9e-58 228.4 177 65.0
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 4.9e-58 228.4 174 64.9
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 4.9e-58 228.4 174 64.4
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 6.4e-58 228.0 174 66.1
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 8.3e-58 227.6 179 65.4
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 8.3e-58 227.6 179 62.6
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 2.4e-57 226.1 174 65.5
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 7.1e-57 224.6 175 65.1
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 1.2e-56 223.8 175 65.7
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 1.2e-56 223.8 175 65.7
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 1.6e-56 223.4 169 66.3
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 1.6e-56 223.4 188 62.2
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 2.1e-56 223.0 180 65.0
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 2.1e-56 223.0 179 62.6
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 2.7e-56 222.6 174 66.1
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 3.5e-56 222.2 182 61.5
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 3.5e-56 222.2 177 65.0
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 4.6e-56 221.9 175 65.1
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 1.9e-54 216.5 174 63.8
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 1.9e-54 216.5 145 74.5
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 5.6e-54 214.9 172 58.7
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 1.2e-53 213.8 167 67.7
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 1.2e-53 213.8 144 75.0
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 1.2e-53 213.8 187 59.4
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 1.6e-53 213.4 174 61.5
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 2.1e-53 213.0 171 62.6
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 2.1e-53 213.0 181 60.2
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 6.2e-53 211.5 167 67.1
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 2.3e-52 209.5 167 68.3
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 2.6e-51 206.1 176 59.7
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 1.7e-50 203.4 170 60.0
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 2.9e-50 202.6 254 49.6
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 3.7e-50 202.2 166 63.9
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 4.9e-50 201.8 150 70.0
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 1.4e-49 200.3 167 63.5
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 2.1e-48 196.4 169 56.8
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 3.9e-47 192.2 143 67.8
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 1.1e-46 190.7 162 59.3
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 1.9e-46 189.9 207 50.7
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 4.3e-46 188.7 143 69.9
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 2.8e-45 186.0 153 59.5
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 1.1e-44 184.1 136 67.6
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 4.0e-44 182.2 177 55.9
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 8.9e-44 181.0 138 61.6
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 6.4e-42 174.9 118 72.0
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 6.4e-42 174.9 149 63.1
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 2.4e-41 172.9 195 50.8
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 4.6e-40 168.7 186 50.0
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 1.1e-38 164.1 169 47.9
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 4.3e-38 162.2 169 46.7
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 5.3e-36 155.2 140 60.7
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 9.9e-35 151.0 139 54.0
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 8.4e-34 147.9 119 60.5
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 1.1e-33 147.5 116 63.8
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 3.3e-30 136.0 119 58.8
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 3.1e-28 129.4 160 41.9
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 1.5e-19 100.5 87 59.8
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 2.2e-18 96.7 68 72.1
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 6.2e-13 78.6 65 63.1
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 5.3e-12 75.5 53 73.6
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 2.9e-10 69.7 147 28.6
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 8.4e-10 68.2 39 76.9
Medtr1g051110 Medicago truncatula HOM05D001420 ORTHO05D009292 1.9e-09 67.0 72 56.9


User provided reference genes

Program Settings