Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 0.0e+00 1105.1 539 100.0
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 7.4e-287 989.9 542 89.7
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 1.3e-286 989.2 544 88.1
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 7.6e-284 979.9 544 85.8
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 2.6e-268 928.3 548 82.3
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 8.8e-264 913.3 558 79.6
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 1.4e-261 906.0 586 75.9
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 1.3e-259 899.4 555 78.0
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 2.9e-259 898.3 555 78.2
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 6.5e-259 897.1 563 77.4
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 1.1e-245 853.2 549 76.7
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 4.9e-238 827.8 556 73.0
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 2.0e-228 795.8 544 73.3
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 5.6e-226 787.7 557 69.1
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 1.1e-221 773.5 547 67.8
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 1.2e-220 770.0 559 67.4
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 4.6e-220 768.1 574 65.9
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.7e-219 766.1 558 66.5
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 6.6e-219 764.2 556 66.7
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 6.6e-219 764.2 566 67.0
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 8.6e-219 763.8 564 66.8
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 1.1e-216 756.9 539 69.4
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 1.1e-216 756.9 555 66.5
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 1.1e-216 756.9 556 66.0
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.3e-216 755.7 556 65.8
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 1.2e-215 753.4 579 64.8
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.5e-215 753.1 567 64.7
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 7.5e-215 750.7 543 66.7
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 9.9e-215 750.4 567 66.1
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 9.9e-215 750.4 554 65.5
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.2e-214 749.2 557 67.7
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 2.9e-214 748.8 509 71.9
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 8.3e-214 747.3 554 65.5
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 2.4e-213 745.7 583 63.1
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.2e-213 745.3 554 65.7
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 3.2e-213 745.3 569 64.7
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 5.6e-210 734.6 545 66.1
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 7.3e-210 734.2 576 62.8
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 6.2e-209 731.1 553 65.6
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 3.4e-207 725.3 555 64.1
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 2.2e-206 722.6 520 68.5
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 3.8e-206 721.8 563 63.4
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 5.4e-205 718.0 548 64.2
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 1.2e-204 716.8 552 64.5
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 1.7e-203 713.0 556 64.9
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 3.0e-203 712.2 549 64.1
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 8.7e-203 710.7 540 63.5
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 4.3e-202 708.4 551 63.0
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 4.3e-202 708.4 547 63.4
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 5.6e-202 708.0 548 63.9
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 7.3e-202 707.6 558 62.2
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 1.2e-201 706.8 547 63.3
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 6.2e-201 704.5 573 62.1
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 6.2e-201 704.5 535 63.6
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 8.1e-201 704.1 548 63.7
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 8.1e-201 704.1 553 63.7
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 3.1e-200 702.2 502 67.5
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 6.9e-200 701.0 554 63.2
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 1.5e-199 699.9 561 62.4
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 2.0e-199 699.5 540 63.0
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 2.2e-198 696.0 551 62.3
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 2.2e-198 696.0 539 63.3
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 2.1e-196 689.5 588 59.2
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.3e-195 686.8 535 61.3
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 2.3e-195 686.0 553 61.7
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 8.7e-195 684.1 520 63.3
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.1e-194 683.7 566 60.4
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 9.6e-194 680.6 567 59.4
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 3.6e-193 678.7 540 61.3
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 3.1e-192 675.6 583 58.3
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 2.0e-191 672.9 609 56.3
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 5.8e-191 671.4 575 59.3
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 8.4e-190 667.5 567 58.7
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 1.2e-188 663.7 553 59.3
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 2.1e-188 662.9 586 57.8
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 4.6e-188 661.8 553 59.3
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 1.8e-187 659.8 550 60.0
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 3.3e-186 655.6 587 57.2
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 9.6e-186 654.1 529 61.1
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 2.8e-185 652.5 481 64.9
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 4.8e-185 651.7 486 64.2
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 8.1e-185 651.0 581 57.8
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.6e-183 646.0 488 66.2
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 2.6e-183 646.0 534 60.1
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 6.4e-182 641.3 539 58.8
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 2.5e-181 639.4 469 65.2
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 4.6e-180 635.2 608 53.9
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 1.3e-174 617.1 541 57.3
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 5.5e-173 611.7 469 61.6
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 9.3e-173 610.9 480 60.0
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 7.9e-172 607.8 555 55.5
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 1.4e-165 587.0 439 66.3
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.1e-164 583.2 449 65.3
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 2.8e-161 572.8 371 72.5
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 3.6e-156 555.8 392 68.9
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 1.4e-155 553.9 387 66.9
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 2.3e-155 553.1 384 67.4
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 3.3e-154 549.3 546 54.0
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 5.5e-149 531.9 344 71.8
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 1.6e-148 530.4 567 50.6
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 1.4e-147 527.3 367 72.8
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 4.4e-146 522.3 432 58.6
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 1.2e-143 514.2 345 70.4
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 1.2e-143 514.2 537 51.6
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 8.8e-139 498.0 349 69.9
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 2.8e-137 493.0 548 50.7
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 2.2e-129 466.8 529 48.8
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 2.8e-129 466.5 444 49.3
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 3.1e-128 463.0 343 64.7
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 4.2e-125 452.6 448 54.5
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 1.0e-118 431.4 325 63.7
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.6e-116 424.1 321 62.6
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.7e-113 414.1 490 43.1
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 6.0e-111 405.6 314 62.1
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 5.0e-110 402.5 297 63.6
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 1.1e-109 401.4 297 63.6
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 9.5e-109 398.3 497 43.3
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 3.1e-107 393.3 311 61.7
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.5e-101 374.4 269 66.2
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 1.3e-89 334.7 244 67.2
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.1e-86 322.8 255 61.2
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 6.6e-86 322.4 211 71.6
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 3.2e-80 303.5 479 34.9
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.6e-76 290.0 207 65.2
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.5e-71 273.5 247 55.5
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.8e-65 253.4 225 55.6
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.6e-60 238.0 161 68.9
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 2.2e-57 227.6 146 71.9
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.8e-57 226.9 156 65.4
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.4e-51 207.6 137 70.1
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 1.0e-38 165.6 164 57.3
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 1.4e-38 165.2 89 92.1
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 2.3e-38 164.5 84 94.0
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.0e-37 161.4 173 52.0
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 2.2e-36 157.9 202 47.5
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 8.2e-36 156.0 172 41.3
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 2.4e-35 154.5 125 59.2
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 7.0e-35 152.9 156 52.6
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 1.5e-32 145.2 167 49.7
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.7e-28 130.6 150 42.7
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 1.4e-27 128.6 90 68.9
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 2.5e-24 117.9 131 48.9
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.1e-11 75.9 70 51.4
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.2e-07 62.4 112 42.0
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 3.6e-07 60.8 64 45.3


User provided reference genes

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