Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 1.4e-156 556.2 282 100.0
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 9.0e-135 483.8 280 88.2
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 3.7e-128 461.8 283 84.1
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 3.1e-127 458.8 288 83.3
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 9.0e-127 457.2 288 82.6
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 1.2e-126 456.8 284 82.4
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 5.0e-125 451.4 285 81.1
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 5.7e-121 438.0 289 79.9
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 5.7e-121 438.0 289 79.9
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 5.0e-117 424.9 285 77.2
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.6e-110 402.5 236 87.3
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 3.0e-106 389.0 284 72.9
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 1.8e-103 379.8 278 73.7
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 2.4e-103 379.4 289 69.2
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 5.3e-103 378.3 235 78.3
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 1.2e-102 377.1 309 66.7
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.5e-102 376.7 288 69.1
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 2.0e-102 376.3 288 70.5
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 2.6e-102 375.9 233 81.1
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 4.5e-102 375.2 254 76.8
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 1.0e-101 374.0 282 71.3
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 5.0e-101 371.7 233 77.7
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 6.5e-101 371.3 205 92.2
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 1.5e-100 370.2 254 75.6
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.5e-100 370.2 287 67.6
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 4.2e-100 368.6 255 72.2
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 4.2e-100 368.6 233 81.1
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 4.2e-100 368.6 233 81.1
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 5.5e-100 368.2 233 80.7
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 7.2e-100 367.9 289 68.2
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 7.2e-100 367.9 287 69.3
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 9.4e-100 367.5 290 69.3
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 9.4e-100 367.5 235 76.6
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 9.4e-100 367.5 241 79.7
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.6e-99 366.7 255 72.2
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 1.6e-99 366.7 286 69.2
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.6e-99 366.7 282 70.2
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 2.1e-99 366.3 263 72.2
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 3.6e-99 365.5 289 68.2
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.0e-98 364.0 294 67.0
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.4e-98 363.6 276 70.3
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.8e-98 363.2 231 77.9
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 2.3e-98 362.8 231 78.4
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 2.3e-98 362.8 281 68.0
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.0e-98 362.5 292 67.1
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 4.0e-98 362.1 284 66.9
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 4.0e-98 362.1 259 72.6
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 4.0e-98 362.1 258 73.3
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.2e-98 361.7 294 67.0
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 6.7e-98 361.3 230 79.1
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.1e-97 360.5 288 68.4
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.5e-97 360.1 231 77.1
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.5e-97 360.1 272 68.8
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 1.5e-97 360.1 283 67.8
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.0e-97 359.8 317 64.0
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 2.6e-97 359.4 250 74.4
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 3.3e-97 359.0 231 79.7
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 5.7e-97 358.2 231 76.6
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 5.7e-97 358.2 229 76.9
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 5.7e-97 358.2 290 68.6
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 9.7e-97 357.5 286 65.7
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 9.7e-97 357.5 279 67.7
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 9.7e-97 357.5 291 66.3
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 1.3e-96 357.1 279 69.2
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.3e-96 357.1 279 68.1
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 1.7e-96 356.7 260 72.7
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 2.2e-96 356.3 229 78.6
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 2.2e-96 356.3 280 67.9
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 2.8e-96 355.9 233 77.3
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 4.8e-96 355.1 251 72.5
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 4.8e-96 355.1 230 78.3
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 8.2e-96 354.4 280 67.9
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 1.4e-95 353.6 230 76.5
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 4.1e-95 352.1 282 67.4
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 4.1e-95 352.1 282 67.4
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 5.3e-95 351.7 231 77.5
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 5.3e-95 351.7 285 67.0
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 1.2e-94 350.5 279 67.0
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 2.0e-94 349.7 234 74.4
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 2.6e-94 349.4 279 67.0
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 2.6e-94 349.4 279 67.0
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 2.6e-94 349.4 279 67.0
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.6e-94 349.4 231 74.5
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 4.5e-94 348.6 231 74.5
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 4.5e-94 348.6 258 70.2
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 4.5e-94 348.6 223 78.9
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 5.9e-94 348.2 280 67.5
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 5.9e-94 348.2 229 75.5
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 5.9e-94 348.2 279 65.9
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 1.7e-93 346.7 229 76.0
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 3.8e-93 345.5 224 78.1
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 3.8e-93 345.5 280 66.4
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 1.1e-92 344.0 231 73.6
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 1.6e-91 340.1 231 73.6
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 2.1e-91 339.7 281 63.7
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 3.6e-91 339.0 268 69.4
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.0e-91 337.8 286 64.7
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 2.3e-90 336.3 255 68.6
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 2.3e-90 336.3 232 75.0
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 8.8e-90 334.3 289 62.6
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 7.5e-89 331.3 288 63.5
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 7.5e-89 331.3 288 63.5
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.3e-88 330.5 234 73.5
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 1.7e-88 330.1 232 71.6
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.2e-88 329.7 233 71.2
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 5.9e-86 321.6 229 70.7
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.5e-84 317.0 236 67.8
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 4.2e-84 315.5 223 69.5
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 5.5e-84 315.1 229 69.4
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 1.2e-83 313.9 198 79.8
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 2.3e-82 309.7 243 65.8
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 3.0e-82 309.3 231 66.7
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.0e-82 308.9 246 63.8
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 6.8e-82 308.1 195 80.5
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 6.8e-82 308.1 202 76.2
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.5e-81 307.0 202 75.7
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 4.4e-81 305.4 215 70.2
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 4.4e-81 305.4 229 67.7
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 1.1e-79 300.8 199 76.4
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.4e-79 299.7 203 72.9
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 4.5e-78 295.4 199 73.9
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 1.7e-77 293.5 229 69.4
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.6e-75 287.0 242 62.4
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 2.1e-75 286.6 231 67.1
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 4.0e-74 282.3 199 71.4
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 5.7e-73 278.5 241 59.8
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 9.8e-73 277.7 221 66.5
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.4e-71 273.1 233 63.9
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 5.4e-71 271.9 233 60.9
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 1.3e-69 267.3 167 81.4
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.6e-67 259.2 190 73.2
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 9.8e-65 251.1 231 59.3
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 1.2e-62 244.2 239 56.1
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 2.0e-62 243.4 230 54.3
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 6.0e-62 241.9 191 65.4
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.4e-57 226.1 235 53.6
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 7.1e-55 218.4 149 74.5
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 6.6e-53 211.8 145 73.1
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.6e-51 206.1 151 68.9
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.2e-46 191.0 130 71.5
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 2.1e-46 190.3 205 52.7
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.7e-45 187.2 146 66.4
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.1e-42 176.4 135 66.7
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.6e-35 154.1 158 57.6
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 6.2e-35 152.1 123 62.6
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-34 151.0 85 82.4
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-34 151.0 85 82.4
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 7.1e-31 138.7 118 67.8
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.8e-27 125.9 74 81.1
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.8e-26 124.0 74 79.7
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.4e-26 123.6 74 79.7
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 2.4e-26 123.6 157 48.4
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 3.1e-26 123.2 74 79.7
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.2e-25 121.3 74 77.0
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 6.4e-24 115.5 198 36.4
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 4.2e-23 112.8 90 67.8
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.0e-21 106.7 72 77.8
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 1.1e-20 104.8 71 78.9
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 5.6e-20 102.4 67 77.6
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 3.4e-17 93.2 66 74.2
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 2.9e-16 90.1 69 68.1
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.9e-16 90.1 64 71.9
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 1.5e-12 77.8 44 81.8
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 2.8e-11 73.6 54 74.1
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 4.8e-11 72.8 44 72.7
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 3.1e-10 70.1 64 57.8
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 4.5e-09 66.2 209 26.8
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 3.2e-07 60.1 70 47.1
A09p34420 Brassica napus HOM05D004185 ORTHO05D040565 7.2e-07 58.9 37 67.6
BraA09t38986Z Brassica rapa HOM05D004185 ORTHO05D040565 7.2e-07 58.9 37 67.6
QL02p069049 Quercus lobata HOM05D004185 ORTHO05D337452 4.6e-06 56.2 33 87.9


User provided reference genes

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