Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G045600 Glycine max HOM05D001667 ORTHO05D001508 2.9e-41 171.4 83 100.0
Glyma.10G076600 Glycine max HOM05D001667 ORTHO05D001508 1.1e-16 89.7 83 51.8
Glyma.02G199900 Glycine max HOM05D001667 ORTHO05D001508 2.3e-14 82.0 82 51.2
VMungo0720G0358 Vigna mungo HOM05D001667 ORTHO05D001508 1.5e-13 79.3 86 47.7
Glyma.10G077300 Glycine max HOM05D001667 ORTHO05D001508 2.0e-13 79.0 85 45.9
TPR.G8730 Trifolium pratense HOM05D001667 ORTHO05D001508 2.6e-13 78.6 87 54.0
Psat6g082040 Pisum sativum HOM05D001667 ORTHO05D001508 3.4e-13 78.2 82 53.7
Glyma.10G077200 Glycine max HOM05D001667 ORTHO05D001508 4.4e-13 77.8 85 47.1
Medtr1g058120 Medicago truncatula HOM05D001667 ORTHO05D001508 4.4e-13 77.8 85 54.1
Glyma.02G200200 Glycine max HOM05D001667 ORTHO05D001508 5.7e-13 77.4 88 47.7
MD12G1033200 Malus domestica HOM05D001667 ORTHO05D001508 9.8e-13 76.6 70 51.4
Glyma.10G077500 Glycine max HOM05D001667 ORTHO05D001508 1.3e-12 76.3 84 51.2
Glyma.10G077100 Glycine max HOM05D001667 ORTHO05D001508 1.7e-12 75.9 85 50.6
MD14G1034000 Malus domestica HOM05D001667 ORTHO05D001508 2.2e-12 75.5 70 51.4
Lalb_Chr21g0315971 Lupinus albus HOM05D001667 ORTHO05D001508 2.8e-12 75.1 74 52.7
Phvul.001G098900 Phaseolus vulgaris HOM05D001667 ORTHO05D001508 2.8e-12 75.1 73 52.1
Haze_19672 Corylus avellana HOM05D001667 ORTHO05D001508 6.3e-12 73.9 74 51.4
C03p03060 Brassica napus HOM05D001667 ORTHO05D001508 8.3e-12 73.6 76 47.4
Cfa016662 Carpinus fangiana HOM05D001667 ORTHO05D001508 1.1e-11 73.2 74 50.0
Phvul.003G204800 Phaseolus vulgaris HOM05D001667 ORTHO05D001508 1.1e-11 73.2 79 48.1
RcHm_v2.0_Chr3g0475171 Rosa chinensis HOM05D001667 ORTHO05D001508 1.1e-11 73.2 82 47.6
TAR623G1308 Trochodendron aralioides HOM05D001667 ORTHO05D001508 1.1e-11 73.2 78 48.7
Ca_11725_v3 Cicer arietinum L. HOM05D001667 ORTHO05D001508 1.4e-11 72.8 87 44.8
Eucgr.A02613 Eucalyptus grandis HOM05D001667 ORTHO05D001508 1.4e-11 72.8 76 48.7
Manes.09G049500 Manihot esculenta HOM05D001667 ORTHO05D001508 1.8e-11 72.4 72 50.0
FvH4_6g19800 Fragaria vesca HOM05D001667 ORTHO05D001508 2.4e-11 72.0 77 49.4
FAN02G0800 Fragaria x ananassa HOM05D001667 ORTHO05D001508 2.4e-11 72.0 77 49.4
FAN05G2851 Fragaria x ananassa HOM05D001667 ORTHO05D001508 2.4e-11 72.0 77 49.4
FAN14G5362 Fragaria x ananassa HOM05D001667 ORTHO05D001508 2.4e-11 72.0 77 49.4
Prupe.7G099000 Prunus persica HOM05D001667 ORTHO05D001508 2.4e-11 72.0 77 49.4
Dinv31738 Davidia involucrata HOM05D001667 ORTHO05D001508 3.1e-11 71.6 76 50.0
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 4.1e-11 71.2 78 48.7
CiPaw.09G018100 Carya illinoinensis HOM05D001667 ORTHO05D001508 4.1e-11 71.2 74 51.4
CiPaw.10G014800 Carya illinoinensis HOM05D001667 ORTHO05D001508 4.1e-11 71.2 74 48.6
Lj5g0002622 Lotus japonicus HOM05D001667 ORTHO05D001508 4.1e-11 71.2 84 44.0
A03p02660 Brassica napus HOM05D001667 ORTHO05D001508 5.4e-11 70.9 76 46.1
C02p02640 Brassica napus HOM05D001667 ORTHO05D001508 5.4e-11 70.9 76 46.1
BolC2t06230H Brassica oleracea HOM05D001667 ORTHO05D001508 5.4e-11 70.9 76 46.1
BolC3t12854H Brassica oleracea HOM05D001667 ORTHO05D001508 5.4e-11 70.9 76 46.1
BraA03t09627Z Brassica rapa HOM05D001667 ORTHO05D001508 5.4e-11 70.9 76 46.1
BraA02t04875Z Brassica rapa HOM05D001667 ORTHO05D001508 7.0e-11 70.5 76 46.1
COL.COLO4_29621 Corchorus olitorius HOM05D001667 ORTHO05D001508 7.0e-11 70.5 82 47.6
MELO3C009512.2 Cucumis melo HOM05D001667 ORTHO05D001508 7.0e-11 70.5 78 48.7
CsaV3_3G037690 Cucumis sativus L. HOM05D001667 ORTHO05D001508 7.0e-11 70.5 78 48.7
FAN09G1589 Fragaria x ananassa HOM05D001667 ORTHO05D001508 7.0e-11 70.5 76 48.7
Lalb_Chr02g0154691 Lupinus albus HOM05D001667 ORTHO05D001508 7.0e-11 70.5 79 46.8
VMungo1383G3068 Vigna mungo HOM05D001667 ORTHO05D001508 7.0e-11 70.5 86 47.7
BcaB01g05731 Brassica carinata HOM05D001667 ORTHO05D001508 9.1e-11 70.1 76 46.1
Dinv21143 Davidia involucrata HOM05D001667 ORTHO05D001508 9.1e-11 70.1 71 47.9
Duzib106G0445 Durio zibethinus HOM05D001667 ORTHO05D001508 9.1e-11 70.1 77 46.8
FAN05G3938 Fragaria x ananassa HOM05D001667 ORTHO05D001508 9.1e-11 70.1 77 49.4
Gorai.009G398500 Gossypium raimondii HOM05D001667 ORTHO05D001508 1.2e-10 69.7 72 47.2
QL07p037582 Quercus lobata HOM05D001667 ORTHO05D001508 1.2e-10 69.7 75 46.7
BcaB05g21676 Brassica carinata HOM05D001667 ORTHO05D001508 1.6e-10 69.3 76 44.7
Cc00_g18340 Coffea canephora HOM05D001667 ORTHO05D001508 1.6e-10 69.3 80 43.8
Gohir.D04G095700 Gossypium hirsutum HOM05D001667 ORTHO05D001508 1.6e-10 69.3 72 47.2
Potri.016G073400 Populus trichocarpa HOM05D001667 ORTHO05D001508 2.0e-10 68.9 75 49.3
Sabra06G0158900 Salix brachista HOM05D001667 ORTHO05D001508 2.0e-10 68.9 75 49.3
Thecc.05G099800 Theobroma cacao HOM05D001667 ORTHO05D001508 2.0e-10 68.9 76 48.7
Duzib093G1761 Durio zibethinus HOM05D001667 ORTHO05D001508 2.7e-10 68.6 77 46.8
TAR636G2183 Trochodendron aralioides HOM05D001667 ORTHO05D001508 2.7e-10 68.6 78 47.4
Duzib128G0359 Durio zibethinus HOM05D001667 ORTHO05D001508 3.5e-10 68.2 77 46.8
Gohir.A04G060300 Gossypium hirsutum HOM05D001667 ORTHO05D001508 3.5e-10 68.2 72 47.2
Manes.08G030700 Manihot esculenta HOM05D001667 ORTHO05D001508 3.5e-10 68.2 81 46.9
Sp6g36590 Schrenkiella parvula HOM05D001667 ORTHO05D001508 4.5e-10 67.8 76 44.7
Sed0009866 Sechium edule HOM05D001667 ORTHO05D001508 4.5e-10 67.8 77 48.1
Atru.chr8.1412 Acer truncatum HOM05D001667 ORTHO05D001508 5.9e-10 67.4 74 48.6
ClCG10G018560 Citrullus lanatus HOM05D001667 ORTHO05D001508 5.9e-10 67.4 78 48.7
Lj1g0028219 Lotus japonicus HOM05D001667 ORTHO05D001508 5.9e-10 67.4 82 45.1
MSTRG.19292 Avicennia marina HOM05D001667 ORTHO05D001508 7.7e-10 67.0 77 49.4
Gohir.A09G137100 Gossypium hirsutum HOM05D001667 ORTHO05D001508 7.7e-10 67.0 77 45.5
Gorai.006G151100 Gossypium raimondii HOM05D001667 ORTHO05D001508 7.7e-10 67.0 77 45.5
Gohir.D01G126900 Gossypium hirsutum HOM05D001667 ORTHO05D001508 1.0e-09 66.6 81 44.4
Gorai.002G157600 Gossypium raimondii HOM05D001667 ORTHO05D001508 1.0e-09 66.6 81 44.4
SHI27881 Sapria himalayana HOM05D001667 ORTHO05D001508 1.3e-09 66.2 84 47.6
Sed0022322 Sechium edule HOM05D001667 ORTHO05D001508 1.3e-09 66.2 77 46.8
TWI74G1322 Tripterygium wilfordii HOM05D001667 ORTHO05D001508 1.3e-09 66.2 73 49.3
Gohir.D01G192900 Gossypium hirsutum HOM05D001667 ORTHO05D001508 1.7e-09 65.9 78 44.9
Potri.006G206000 Populus trichocarpa HOM05D001667 ORTHO05D001508 2.2e-09 65.5 75 45.3
CsaV3_6G040940 Cucumis sativus L. HOM05D001667 ORTHO05D001508 2.9e-09 65.1 76 42.1
Thhalv10015029m.g Eutrema salsugineum HOM05D001667 ORTHO05D001508 2.9e-09 65.1 76 43.4
Ciclev10013147m.g Citrus clementina HOM05D001667 ORTHO05D001508 3.8e-09 64.7 73 45.2
CARHR206990 Cardamine hirsuta HOM05D001667 ORTHO05D001508 5.0e-09 64.3 76 43.4
A10p30140 Brassica napus HOM05D001667 ORTHO05D001508 6.5e-09 63.9 76 44.7
C09p70550 Brassica napus HOM05D001667 ORTHO05D001508 6.5e-09 63.9 76 44.7
BraA10t45052Z Brassica rapa HOM05D001667 ORTHO05D001508 6.5e-09 63.9 76 44.7
Aqoxy4G02696 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 1.1e-08 63.2 72 47.2
Gorai.002G236700 Gossypium raimondii HOM05D001667 ORTHO05D001508 1.1e-08 63.2 78 43.6
arahy.Tifrunner.gnm1.ann1.8QQ9KG Arachis hypogaea HOM05D001667 ORTHO05D001508 1.5e-08 62.8 80 40.0
arahy.Tifrunner.gnm1.ann1.DY9K7Z Arachis hypogaea HOM05D001667 ORTHO05D001508 1.5e-08 62.8 80 40.0
MBI17_g16778_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 1.9e-08 62.4 75 46.7
Phvul.007G270300 Phaseolus vulgaris HOM05D001667 ORTHO05D001508 1.9e-08 62.4 77 45.5
Oeu017706.1 Olea europaea HOM05D001667 ORTHO05D001508 3.2e-08 61.6 74 43.2
THA.LOC104816609 Tarenaya hassleriana HOM05D001667 ORTHO05D001508 3.2e-08 61.6 78 42.3
DCAR_020726 Daucus carota HOM05D001667 ORTHO05D001508 4.2e-08 61.2 72 43.1
Sabra16G0076200 Salix brachista HOM05D001667 ORTHO05D001508 4.2e-08 61.2 69 47.8
Psat3g030520 Pisum sativum HOM05D001667 ORTHO05D001508 5.5e-08 60.8 75 45.3
TPR.G24419 Trifolium pratense HOM05D001667 ORTHO05D001508 7.2e-08 60.5 80 43.8
AL6G16300 Arabidopsis lyrata HOM05D001667 ORTHO05D001508 9.4e-08 60.1 76 40.8
AT5G06270 Arabidopsis thaliana HOM05D001667 ORTHO05D001508 9.4e-08 60.1 76 40.8
CSS0036703 Camellia sinensis var. sinensis HOM05D001667 ORTHO05D001508 9.4e-08 60.1 77 41.6
CSS0040873 Camellia sinensis var. sinensis HOM05D001667 ORTHO05D001508 9.4e-08 60.1 77 41.6
Carub.0003s1093 Capsella rubella HOM05D001667 ORTHO05D001508 9.4e-08 60.1 71 43.7
MSTRG.5878 Avicennia marina HOM05D001667 ORTHO05D001508 1.2e-07 59.7 76 40.8
BcaC06g32346 Brassica carinata HOM05D001667 ORTHO05D001508 1.2e-07 59.7 76 42.1
BcaC06g32358 Brassica carinata HOM05D001667 ORTHO05D001508 1.2e-07 59.7 76 42.1
BcaC06g32359 Brassica carinata HOM05D001667 ORTHO05D001508 1.2e-07 59.7 76 42.1
BolC9t59800H Brassica oleracea HOM05D001667 ORTHO05D001508 1.2e-07 59.7 76 42.1
Carub.0006s0516 Capsella rubella HOM05D001667 ORTHO05D001508 1.2e-07 59.7 76 40.8
Rhsim03G0067600 Rhododendron simsii HOM05D001667 ORTHO05D001508 1.2e-07 59.7 68 45.6
ClCG04G010320 Citrullus lanatus HOM05D001667 ORTHO05D001508 1.6e-07 59.3 80 38.8
PGR004G2379 Punica granatum HOM05D001667 ORTHO05D001508 1.6e-07 59.3 75 42.7
Nn2g14254 Nelumbo nucifera HOM05D001590 ORTHO05D001508 2.1e-07 58.9 79 45.6
THA.LOC104826812 Tarenaya hassleriana HOM05D001667 ORTHO05D001508 2.1e-07 58.9 77 42.9
Gohir.A01G202900 Gossypium hirsutum HOM05D001667 ORTHO05D001508 2.7e-07 58.5 78 41.0
PSO801G0813 Papaver somniferum HOM05D001667 ORTHO05D001508 2.7e-07 58.5 72 45.8
Phvul.001G193700 Phaseolus vulgaris HOM05D001667 ORTHO05D001508 2.7e-07 58.5 80 41.2
Glyma.15G209700 Glycine max HOM05D001667 ORTHO05D001508 3.6e-07 58.2 33 66.7
Lalb_Chr25g0288121 Lupinus albus HOM05D001667 ORTHO05D001508 3.6e-07 58.2 70 47.1
Nitab4.5_0000840g0040 Nicotiana tabacum HOM05D001667 ORTHO05D001508 3.6e-07 58.2 69 44.9
VMungo1383G0716 Vigna mungo HOM05D001667 ORTHO05D001508 3.6e-07 58.2 80 41.2
ATR0772G118 Amborella trichopoda HOM05D001667 ORTHO05D001508 4.7e-07 57.8 87 41.4
Lalb_Chr01g0017921 Lupinus albus HOM05D001667 ORTHO05D001508 4.7e-07 57.8 80 43.8
Medtr7g105730 Medicago truncatula HOM05D001667 ORTHO05D001508 4.7e-07 57.8 79 43.0
Actinidia07932 Actinidia chinensis HOM05D001667 ORTHO05D001508 6.1e-07 57.4 83 39.8
AL3G23160 Arabidopsis lyrata HOM05D001667 ORTHO05D001508 6.1e-07 57.4 73 45.2
SGA_v2.0_scaffold184G39999 Striga asiatica HOM05D001667 ORTHO05D001508 6.1e-07 57.4 78 41.0
EL10Ac7g16821 Beta vulgaris HOM05D001667 ORTHO05D001508 8.0e-07 57.0 75 42.7
Glyma.19G197400 Glycine max HOM05D001667 ORTHO05D001508 1.0e-06 56.6 80 40.0
Hma1.2p1_0064F.1_g034920 Hydrangea macrophylla HOM05D001667 ORTHO05D001508 1.0e-06 56.6 78 39.7
AT3G11600 Arabidopsis thaliana HOM05D001667 ORTHO05D001508 1.4e-06 56.2 71 43.7
Thhalv10021790m.g Eutrema salsugineum HOM05D001667 ORTHO05D001508 1.4e-06 56.2 71 43.7
CSS0046605 Camellia sinensis var. sinensis HOM05D001667 ORTHO05D001508 1.8e-06 55.8 75 44.0
Dinv21698 Davidia involucrata HOM05D001667 ORTHO05D001508 1.8e-06 55.8 75 36.0
Migut.D02403 Erythranthe guttata HOM05D001667 ORTHO05D001508 1.8e-06 55.8 64 42.2
Migut.D02419 Erythranthe guttata HOM05D001667 ORTHO05D001508 1.8e-06 55.8 64 42.2
CARHR086160 Cardamine hirsuta HOM05D001667 ORTHO05D001508 2.3e-06 55.5 71 43.7
unitig_699.g19452 Utricularia gibba HOM05D001667 ORTHO05D001508 2.3e-06 55.5 67 40.3
Ah.15g090550 Amaranthus hybridus HOM05D001667 ORTHO05D001508 3.0e-06 55.1 70 42.9
Glyma.18G165300 Glycine max HOM05D001667 ORTHO05D001508 3.0e-06 55.1 33 63.6
Sp3g09840 Schrenkiella parvula HOM05D001667 ORTHO05D001508 3.0e-06 55.1 71 42.3
unitig_27.g25121 Utricularia gibba HOM05D001667 ORTHO05D001508 3.0e-06 55.1 67 41.8
Ca_09037_v3 Cicer arietinum L. HOM05D001667 ORTHO05D001508 4.0e-06 54.7 69 44.9
BcaB06g25603 Brassica carinata HOM05D001667 ORTHO05D001508 6.8e-06 53.9 71 40.8
Lalb_Chr20g0111511 Lupinus albus HOM05D001667 ORTHO05D001508 6.8e-06 53.9 79 39.2
Oeu009316.1 Olea europaea HOM05D001667 ORTHO05D001508 6.8e-06 53.9 77 42.9
BcaC05g29350 Brassica carinata HOM05D001667 ORTHO05D001508 8.8e-06 53.5 71 40.8
C05p56330 Brassica napus HOM05D001667 ORTHO05D001508 8.8e-06 53.5 71 40.8
BolC5t34297H Brassica oleracea HOM05D001667 ORTHO05D001508 8.8e-06 53.5 71 40.8


User provided reference genes

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