Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 5.2e-102 374.4 192 100.0
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 2.4e-99 365.5 192 98.4
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 7.1e-99 364.0 192 97.9
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 9.2e-99 363.6 192 98.4
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 1.2e-98 363.2 192 97.9
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 1.2e-98 363.2 192 97.9
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 2.7e-98 362.1 192 97.9
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 4.6e-98 361.3 192 96.9
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 3.0e-97 358.6 192 96.9
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 5.1e-97 357.8 192 95.8
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 5.6e-96 354.4 192 95.3
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 5.1e-89 331.3 188 89.9
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 1.9e-88 329.3 188 88.8
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 2.1e-87 325.9 195 88.7
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 2.1e-87 325.9 189 87.8
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 3.1e-86 322.0 194 86.1
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 6.9e-86 320.9 195 87.2
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 9.9e-85 317.0 187 89.3
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 1.3e-84 316.6 194 85.1
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 1.7e-84 316.2 189 85.7
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.7e-84 316.2 195 86.2
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.7e-84 316.2 195 86.2
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 1.7e-84 316.2 194 86.1
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 3.8e-84 315.1 195 85.6
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 4.9e-84 314.7 188 86.2
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 1.1e-83 313.5 196 84.7
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 1.4e-83 313.2 195 86.7
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 2.4e-83 312.4 189 87.3
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 3.2e-83 312.0 194 84.5
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 3.2e-83 312.0 196 84.2
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 3.2e-83 312.0 196 84.2
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 4.2e-83 311.6 190 86.3
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 4.2e-83 311.6 196 85.2
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 5.4e-83 311.2 187 87.2
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 7.1e-83 310.8 174 89.7
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 7.1e-83 310.8 199 82.4
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 9.3e-83 310.5 190 83.7
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 9.3e-83 310.5 190 83.7
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.2e-82 310.1 196 83.7
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 1.6e-82 309.7 190 84.2
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.1e-82 309.3 189 85.7
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 2.1e-82 309.3 190 83.2
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 2.1e-82 309.3 196 83.2
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 2.7e-82 308.9 191 83.2
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 2.7e-82 308.9 194 84.0
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 2.7e-82 308.9 190 84.2
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 3.5e-82 308.5 188 85.6
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 3.5e-82 308.5 190 82.6
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 6.0e-82 307.8 190 83.2
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 6.0e-82 307.8 190 83.2
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 7.9e-82 307.4 190 82.6
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.8e-81 306.2 190 82.1
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 1.8e-81 306.2 190 81.6
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 1.8e-81 306.2 190 82.6
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 2.3e-81 305.8 190 82.6
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 2.3e-81 305.8 190 83.7
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 3.0e-81 305.4 190 82.1
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 3.0e-81 305.4 190 82.1
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 5.1e-81 304.7 190 82.6
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 5.1e-81 304.7 189 85.2
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 6.7e-81 304.3 190 84.7
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.9e-80 302.8 188 84.6
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 7.4e-80 300.8 194 82.0
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 4.8e-79 298.1 192 79.2
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 6.2e-79 297.7 188 83.5
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 3.1e-78 295.4 195 81.5
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 3.1e-78 295.4 195 81.5
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 3.1e-78 295.4 190 82.6
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 9.9e-77 290.4 190 81.6
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 9.9e-77 290.4 190 80.0
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 1.7e-76 289.7 188 79.3
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 2.9e-76 288.9 190 81.1
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 2.9e-76 288.9 190 81.1
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 2.9e-76 288.9 190 81.1
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 3.8e-76 288.5 189 81.0
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 3.8e-76 288.5 193 80.8
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 3.8e-76 288.5 193 80.8
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 1.4e-75 286.6 192 79.2
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.9e-75 286.2 188 79.3
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 2.4e-75 285.8 192 79.2
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 3.2e-75 285.4 192 81.2
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 4.2e-75 285.0 187 79.7
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 5.5e-75 284.6 192 80.2
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 7.1e-75 284.3 188 79.3
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 1.6e-74 283.1 195 78.5
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 1.0e-73 280.4 187 77.5
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 1.0e-73 280.4 190 79.5
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 8.7e-73 277.3 195 77.4
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 1.9e-72 276.2 187 78.1
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 7.4e-72 274.2 187 77.0
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 2.8e-71 272.3 189 75.7
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 6.2e-71 271.2 187 75.4
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 1.1e-70 270.4 193 74.6
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 1.4e-70 270.0 181 76.2
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 2.4e-70 269.2 203 69.5
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 1.7e-68 263.1 184 75.0
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 6.5e-68 261.2 184 73.9
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 9.3e-67 257.3 180 75.0
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 7.9e-66 254.2 175 78.3
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 1.9e-64 249.6 188 71.3
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 5.7e-64 248.1 200 65.5
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 7.4e-64 247.7 191 68.6
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 9.7e-64 247.3 185 69.7
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 1.3e-63 246.9 184 71.2
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 6.3e-63 244.6 202 63.4
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 7.6e-61 237.7 210 60.5
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 1.0e-60 237.3 181 68.5
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 6.5e-60 234.6 129 91.5
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 7.2e-59 231.1 184 61.4
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 1.3e-55 220.3 190 67.9
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 1.3e-55 220.3 135 83.0
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 4.8e-55 218.4 137 85.4
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 5.3e-54 214.9 189 64.0
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 1.1e-48 197.2 167 65.3
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.8e-47 192.6 190 61.1
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 8.5e-44 181.0 120 83.3
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 2.3e-41 172.9 116 80.2
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 5.7e-40 168.3 192 54.2
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 1.3e-39 167.2 123 74.8
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 1.3e-36 157.1 102 76.5
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 2.7e-34 149.4 164 44.5
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 4.0e-33 145.6 136 64.7
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 7.5e-32 141.4 97 76.3
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 1.4e-30 137.1 90 77.8
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 7.7e-29 131.3 106 67.0
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 1.2e-26 124.0 71 94.4
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 1.4e-22 110.5 82 73.2
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 6.8e-17 91.7 173 31.8
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 7.5e-16 88.2 45 86.7
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.7e-15 87.0 77 66.2
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 2.7e-13 79.7 160 31.9
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 3.6e-10 69.3 102 45.1
SGA_v2.0_scaffold105G30513 Striga asiatica HOM05D000825 ORTHO05D002486 1.9e-06 57.0 78 57.7
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 4.1e-06 55.8 52 69.2


User provided reference genes

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