Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G042200 Glycine max HOM05D006942 ORTHO05D008737 5.4e-164 580.9 283 100.0
Glyma.19G110300 Glycine max HOM05D006942 ORTHO05D008737 7.1e-140 500.7 292 88.7
Phvul.001G109600 Phaseolus vulgaris HOM05D006942 ORTHO05D008737 1.1e-132 476.9 291 84.9
VMungo1383G0897 Vigna mungo HOM05D006942 ORTHO05D008737 1.4e-122 443.4 288 80.9
Lj1g0019871 Lotus japonicus HOM05D006942 ORTHO05D008737 3.9e-122 441.8 290 79.3
arahy.Tifrunner.gnm1.ann1.0W916P Arachis hypogaea HOM05D006942 ORTHO05D008737 4.4e-121 438.3 294 77.9
Lalb_Chr24g0403081 Lupinus albus HOM05D006942 ORTHO05D008737 3.9e-114 415.2 281 77.6
TPR.G5873 Trifolium pratense HOM05D006942 ORTHO05D008737 2.7e-107 392.5 296 72.3
Psat3g089160 Pisum sativum HOM05D006942 ORTHO05D008737 8.0e-107 391.0 293 71.0
Medtr7g085420 Medicago truncatula HOM05D006942 ORTHO05D008737 2.2e-104 382.9 289 72.3
QL07p020181 Quercus lobata HOM05D006942 ORTHO05D008737 1.6e-102 376.7 287 71.8
Manes.08G149200 Manihot esculenta HOM05D006942 ORTHO05D008737 1.4e-98 363.6 283 68.2
Atru.chr2.1323 Acer truncatum HOM05D006942 ORTHO05D008737 1.8e-98 363.2 284 67.6
CANSAT78G1082 Cannabis sativa HOM05D006942 ORTHO05D008737 3.0e-98 362.5 290 68.3
TWI34G0045 Tripterygium wilfordii HOM05D006942 ORTHO05D008737 2.0e-97 359.8 290 65.2
Haze_19409 Corylus avellana HOM05D006942 ORTHO05D008737 2.6e-97 359.4 318 63.2
Thecc.05G293100 Theobroma cacao HOM05D006942 ORTHO05D008737 7.5e-97 357.8 287 67.6
FvH4_3g25250 Fragaria vesca HOM05D006942 ORTHO05D008737 1.4e-95 353.6 288 67.7
Gorai.007G287900 Gossypium raimondii HOM05D006942 ORTHO05D008737 5.4e-95 351.7 291 65.6
Potri.013G059500 Populus trichocarpa HOM05D006942 ORTHO05D008737 5.4e-95 351.7 282 65.6
Duzib177G1195 Durio zibethinus HOM05D006942 ORTHO05D008737 1.2e-94 350.5 289 64.7
COL.COLO4_13617 Corchorus olitorius HOM05D006942 ORTHO05D008737 2.0e-94 349.7 289 64.4
Nn7g35832 Nelumbo nucifera HOM05D006942 ORTHO05D008737 3.5e-94 349.0 290 63.1
Gorai.013G123100 Gossypium raimondii HOM05D006942 ORTHO05D008737 5.9e-94 348.2 289 63.7
Sabra19G0041400 Salix brachista HOM05D006942 ORTHO05D008737 5.9e-94 348.2 283 66.4
Lalb_Chr06g0173931 Lupinus albus HOM05D006942 ORTHO05D008737 1.0e-93 347.4 314 59.2
Gohir.D13G109500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.7e-93 346.7 289 63.7
Sed0013150 Sechium edule HOM05D006942 ORTHO05D008737 2.9e-93 345.9 281 65.8
CsaV3_3G043400 Cucumis sativus L. HOM05D006942 ORTHO05D008737 6.5e-93 344.7 281 66.2
ClCG10G013230 Citrullus lanatus HOM05D006942 ORTHO05D008737 8.6e-93 344.4 281 65.5
FAN16G3006 Fragaria x ananassa HOM05D006942 ORTHO05D008737 1.9e-92 343.2 289 66.1
Gohir.A13G105500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 3.3e-92 342.4 289 62.6
MELO3C026901.2 Cucumis melo HOM05D006942 ORTHO05D008737 4.2e-92 342.0 281 65.5
FAN21G2944 Fragaria x ananassa HOM05D006942 ORTHO05D008737 7.2e-92 341.3 287 65.2
Rhsim04G0087000 Rhododendron simsii HOM05D006942 ORTHO05D008737 7.2e-92 341.3 282 62.8
MBI11_g05460_MAGBIO Magnolia biondii HOM05D006942 ORTHO05D008737 9.5e-92 340.9 286 62.6
PGR042G3330 Punica granatum HOM05D006942 ORTHO05D008737 9.5e-92 340.9 280 65.0
Sed0025081 Sechium edule HOM05D006942 ORTHO05D008737 3.6e-91 339.0 282 64.5
vmacro09146 Vaccinium macrocarpon HOM05D006942 ORTHO05D008737 8.0e-91 337.8 282 62.8
RcHm_v2.0_Chr5g0046891 Rosa chinensis HOM05D006942 ORTHO05D008737 2.3e-90 336.3 299 61.2
Eucgr.A02087 Eucalyptus grandis HOM05D006942 ORTHO05D008737 6.8e-90 334.7 281 64.1
Ciclev10021582m.g Citrus clementina HOM05D006942 ORTHO05D008737 8.9e-90 334.3 285 63.2
Nn2g15884 Nelumbo nucifera HOM05D002140 ORTHO05D008737 1.7e-88 330.1 287 60.6
TAR633G0669 Trochodendron aralioides HOM05D006942 ORTHO05D008737 2.2e-88 329.7 289 61.9
THA.LOC104823787 Tarenaya hassleriana HOM05D006942 ORTHO05D008737 4.9e-88 328.6 290 61.7
Cpa.g.sc51.94 Carica papaya HOM05D006942 ORTHO05D008737 4.1e-87 325.5 299 62.9
arahy.Tifrunner.gnm1.ann1.T4HPZA Arachis hypogaea HOM05D006942 ORTHO05D008737 2.0e-86 323.2 294 63.3
PSO339G1210 Papaver somniferum HOM05D006942 ORTHO05D008737 1.0e-85 320.9 288 60.8
MD12G1002500 Malus domestica HOM05D006942 ORTHO05D008737 1.3e-85 320.5 259 66.4
GSVIVG01033386001 Vitis vinifera HOM05D006942 ORTHO05D008737 1.1e-84 317.4 182 81.9
SpUn0001_1050 Schrenkiella parvula HOM05D006942 ORTHO05D008737 2.5e-84 316.2 290 60.3
DCAR_019882 Daucus carota HOM05D006942 ORTHO05D008737 7.3e-84 314.7 273 61.9
AL1G64670 Arabidopsis lyrata HOM05D006942 ORTHO05D008737 1.2e-83 313.9 285 60.0
BcaB07g31088 Brassica carinata HOM05D006942 ORTHO05D008737 2.1e-83 313.2 271 61.3
Aqoxy2G00557 Aquilegia oxysepala HOM05D006942 ORTHO05D008737 2.8e-83 312.8 286 59.8
Peaxi162Scf00076g01036 Petunia axillaris HOM05D006942 ORTHO05D008737 3.6e-83 312.4 305 57.0
CARHR028870 Cardamine hirsuta HOM05D006942 ORTHO05D008737 4.7e-83 312.0 285 59.6
CDE10G0368 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 6.1e-83 311.6 291 56.7
A09p19530 Brassica napus HOM05D006942 ORTHO05D008737 1.0e-82 310.8 282 60.3
BcaC04g22009 Brassica carinata HOM05D006942 ORTHO05D008737 1.4e-82 310.5 278 60.8
C09p24900 Brassica napus HOM05D006942 ORTHO05D008737 1.4e-82 310.5 278 60.8
BolC9t55381H Brassica oleracea HOM05D006942 ORTHO05D008737 1.4e-82 310.5 278 60.8
Eucgr.K01480 Eucalyptus grandis HOM05D006942 ORTHO05D008737 3.0e-82 309.3 289 57.1
SGA_v2.0_scaffold50G18512 Striga asiatica HOM05D006942 ORTHO05D008737 1.5e-81 307.0 280 59.3
Cc00_g08890 Coffea canephora HOM05D006942 ORTHO05D008737 2.0e-81 306.6 294 58.2
MSTRG.19939 Avicennia marina HOM05D006942 ORTHO05D008737 4.4e-81 305.4 293 55.6
Carub.0002s0962 Capsella rubella HOM05D006942 ORTHO05D008737 7.5e-81 304.7 200 74.0
DCAR_009675 Daucus carota HOM05D006942 ORTHO05D008737 2.2e-80 303.1 186 77.4
AT2G23840 Arabidopsis thaliana HOM05D006942 ORTHO05D008737 2.9e-80 302.8 182 78.0
Aa31LG2G1990 Aethionema arabicum HOM05D006942 ORTHO05D008737 3.7e-80 302.4 299 57.2
ATR0697G165 Amborella trichopoda HOM05D006942 ORTHO05D008737 3.7e-80 302.4 279 57.7
Gohir.D11G268200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 4.6e-78 295.4 291 58.1
Migut.J01895 Erythranthe guttata HOM05D006942 ORTHO05D008737 7.8e-78 294.7 192 76.0
Thhalv10008350m.g Eutrema salsugineum HOM05D006942 ORTHO05D008737 2.3e-77 293.1 284 59.9
HanXRQChr13g0398101 Helianthus annuus HOM05D006942 ORTHO05D008737 1.5e-76 290.4 197 72.1
ECA233G4155 Erigeron canadensis HOM05D006942 ORTHO05D008737 2.5e-76 289.7 282 57.1
Lsat_1_v5_gn_6_36781 Lactuca sativa HOM05D006942 ORTHO05D008737 2.1e-75 286.6 288 55.6
HPP92_018642 Vanilla planifolia HOM05D006942 ORTHO05D008737 3.6e-75 285.8 286 54.9
CSS0046453 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 2.3e-74 283.1 287 54.7
PGR142G1268 Punica granatum HOM05D006942 ORTHO05D008737 1.2e-73 280.8 289 56.7
EL10Ac3g06808 Beta vulgaris HOM05D006942 ORTHO05D008737 1.5e-73 280.4 337 49.6
CDE06G2457 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 1.1e-71 274.2 233 61.4
TAR623G0107 Trochodendron aralioides HOM05D002140 ORTHO05D002382 1.4e-71 273.9 166 77.1
CiPaw.09G001300 Carya illinoinensis HOM05D006942 ORTHO05D008737 6.6e-69 265.0 151 82.1
Os07g0170200 Oryza sativa ssp. japonica HOM05D006942 ORTHO05D008737 2.1e-67 260.0 165 73.9
Manes.09G142700 Manihot esculenta HOM05D006942 ORTHO05D008737 8.1e-67 258.1 219 64.8
Ca_08258_v3 Cicer arietinum L. HOM05D006942 ORTHO05D008737 3.1e-66 256.1 147 84.4
Prupe.7G002400 Prunus persica HOM05D006942 ORTHO05D008737 3.1e-66 256.1 160 75.0
Sabra13G0052800 Salix brachista HOM05D006942 ORTHO05D008737 2.0e-65 253.4 156 77.6
Actinidia38618 Actinidia chinensis HOM05D006942 ORTHO05D008737 1.7e-64 250.4 286 51.7
AUR62032674 Chenopodium quinoa HOM05D006942 ORTHO05D008737 4.9e-64 248.8 170 69.4
Lj2A357G77 Lonicera japonica HOM05D006942 ORTHO05D008737 3.2e-63 246.1 151 78.1
Sc13g0007650 Simmondsia chinensis HOM05D006942 ORTHO05D008737 5.4e-63 245.4 255 55.7
Duzib128G0620 Durio zibethinus HOM05D006942 ORTHO05D008737 4.7e-59 232.3 247 53.8
Mapoly0043s0076 Marchantia polymorpha HOM05D006942 ORTHO05D008737 1.5e-57 227.3 248 48.8
AUR62032073 Chenopodium quinoa HOM05D006942 ORTHO05D008737 6.0e-54 215.3 164 65.2
Nitab4.5_0000911g0030 Nicotiana tabacum HOM05D006942 ORTHO05D008737 1.3e-53 214.2 236 53.4
Pp3c12_13900 Physcomitrium patens HOM05D006942 ORTHO05D008737 6.6e-53 211.8 206 51.0
AagrBONN_evm.TU.Sc2ySwM_344.2088 Anthoceros agrestis HOM05D006942 ORTHO05D008737 2.5e-52 209.9 197 52.3
Pp3c4_7620 Physcomitrium patens HOM05D006942 ORTHO05D008737 5.6e-52 208.8 206 51.0
Gohir.A11G258200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 8.4e-48 194.9 291 44.7
Ah.04g153240 Amaranthus hybridus HOM05D000653 ORTHO05D003117 5.4e-47 192.2 282 44.3
Potri.019G033200 Populus trichocarpa HOM05D006942 ORTHO05D008737 7.1e-47 191.8 282 43.3
SMO364G0530 Selaginella moellendorffii HOM05D006942 ORTHO05D008737 1.2e-46 191.0 187 48.1
unitig_85.g27430 Utricularia gibba HOM05D006942 ORTHO05D008737 4.3e-44 182.6 157 62.4
Oeu048436.1 Olea europaea HOM05D006942 ORTHO05D008737 8.4e-40 168.3 167 54.5
Hund24842 Selenicereus undatus HOM05D006942 ORTHO05D008737 3.9e-37 159.5 358 35.2
CBR_g603 Chara braunii HOM05D006942 ORTHO05D008737 6.7e-37 158.7 211 45.5
Actinidia17307 Actinidia chinensis HOM05D006942 ORTHO05D008737 1.3e-35 154.5 107 67.3
SalBow2G1960 Salvia bowleyana HOM05D006942 ORTHO05D008737 1.5e-33 147.5 93 71.0
PRCOL_00006758 Prasinoderma coloniale HOM05D006942 ORTHO05D008737 6.4e-32 142.1 169 44.4
Cre04.g217903 Chlamydomonas reinhardtii HOM05D006942 ORTHO05D008737 1.4e-31 141.0 177 43.5
SEGI_36650 Sequoiadendron giganteum HOM05D006942 ORTHO05D008737 1.3e-19 101.3 76 65.8
Zm00001eb300960 Zea mays HOM05D006942 ORTHO05D008737 1.1e-07 61.6 45 64.4


User provided reference genes

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