Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 2.7e-194 681.8 343 100.0
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 5.9e-189 664.1 343 96.5
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.1e-179 633.3 343 92.7
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 4.4e-176 621.3 340 90.0
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 1.0e-164 583.6 343 83.4
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 4.0e-161 571.6 340 82.4
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 1.7e-156 556.2 339 79.9
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 1.9e-155 552.7 339 79.6
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 5.2e-153 544.7 341 78.6
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 5.8e-152 541.2 341 78.0
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 1.3e-151 540.0 343 78.1
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 6.4e-151 537.7 342 76.6
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 3.2e-150 535.4 344 77.6
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 4.1e-150 535.0 343 77.3
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.0e-148 530.4 342 75.4
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 5.1e-148 528.1 340 77.1
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 8.1e-146 520.8 351 74.4
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 1.1e-145 520.4 348 74.4
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 2.9e-143 512.3 336 75.3
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 2.1e-141 506.1 343 72.6
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 1.3e-140 503.4 340 72.6
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 1.7e-140 503.1 337 73.0
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 8.7e-140 500.7 340 71.5
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.9e-139 499.6 341 71.0
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 1.6e-138 496.5 340 72.4
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 3.6e-138 495.4 338 72.2
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 4.7e-138 495.0 343 71.7
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 1.1e-137 493.8 341 71.3
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 1.8e-137 493.0 341 70.4
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.4e-134 483.4 341 68.3
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 1.9e-134 483.0 327 71.9
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 1.9e-134 483.0 344 67.4
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 1.2e-133 480.3 342 68.4
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 3.0e-132 475.7 339 70.8
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 6.6e-132 474.6 347 67.4
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 2.5e-131 472.6 341 68.3
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.6e-131 471.5 340 69.1
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 1.3e-130 470.3 350 66.0
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.1e-130 469.5 340 68.8
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.8e-130 469.2 341 67.2
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 3.6e-130 468.8 343 67.1
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 3.6e-130 468.8 339 65.5
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 6.2e-130 468.0 341 67.2
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 4.0e-129 465.3 343 67.3
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 6.9e-129 464.5 350 65.7
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 2.0e-128 463.0 343 67.9
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.6e-128 462.6 340 67.1
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.4e-128 462.2 350 65.4
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 3.4e-128 462.2 346 65.6
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 4.5e-128 461.8 341 67.7
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 5.8e-128 461.5 327 68.2
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.7e-127 459.9 348 66.7
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 1.7e-127 459.9 376 62.8
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.1e-126 457.2 350 66.0
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 1.9e-126 456.4 342 65.2
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 2.4e-126 456.1 342 64.9
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 5.4e-126 454.9 346 65.0
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 9.3e-126 454.1 350 64.3
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 9.3e-126 454.1 350 64.3
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.2e-125 453.8 339 67.8
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.1e-125 453.0 350 64.0
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 3.5e-125 452.2 342 64.3
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 3.0e-124 449.1 342 64.3
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 3.9e-124 448.7 339 64.9
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 6.7e-124 448.0 345 63.2
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 8.7e-124 447.6 343 63.0
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.5e-123 446.8 343 62.7
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.5e-123 446.8 342 67.0
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.6e-122 443.4 352 65.1
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 2.1e-122 443.0 343 62.1
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 2.8e-122 442.6 379 61.2
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 2.8e-122 442.6 339 64.9
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 2.8e-122 442.6 340 65.9
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.7e-122 442.2 393 58.0
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 4.8e-122 441.8 343 63.6
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 4.8e-122 441.8 341 65.1
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 6.2e-122 441.4 339 64.0
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.1e-121 440.7 347 64.6
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.1e-121 440.7 341 64.8
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 1.8e-121 439.9 349 63.6
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.8e-121 439.9 342 65.8
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 2.4e-121 439.5 349 63.6
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 9.0e-121 437.6 342 62.3
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 9.0e-121 437.6 339 64.0
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 9.0e-121 437.6 343 64.1
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 1.5e-120 436.8 342 62.0
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 1.5e-120 436.8 342 62.0
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 2.0e-120 436.4 342 61.4
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 4.5e-120 435.3 337 64.7
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 7.6e-120 434.5 341 64.2
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 1.7e-119 433.3 346 63.3
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 8.4e-119 431.0 340 62.1
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 8.4e-119 431.0 341 63.3
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 7.1e-118 427.9 341 62.8
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 9.3e-118 427.6 340 61.5
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 1.3e-116 423.7 341 61.9
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 2.3e-116 422.9 244 84.8
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 3.0e-116 422.5 369 60.4
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 3.0e-116 422.5 295 69.2
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 5.1e-116 421.8 294 67.3
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.3e-114 417.2 336 61.6
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 3.7e-114 415.6 366 59.3
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.4e-113 413.7 341 60.7
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 5.3e-113 411.8 337 59.9
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 7.6e-112 407.9 343 60.3
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 2.5e-110 402.9 339 60.8
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 2.5e-110 402.9 339 60.8
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 5.5e-110 401.7 337 59.3
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 3.0e-108 396.0 341 60.7
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 3.0e-108 396.0 342 59.1
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 8.7e-108 394.4 242 80.2
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 3.8e-103 379.0 337 54.6
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 8.5e-103 377.9 357 56.3
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.3e-98 364.0 338 54.4
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 2.8e-98 362.8 322 55.3
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 2.4e-97 359.8 201 85.6
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.2e-93 347.4 282 62.8
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 6.1e-93 345.1 322 55.3
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 1.0e-92 344.4 227 72.7
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 8.2e-90 334.7 379 49.1
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 1.0e-84 317.8 344 52.9
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.2e-84 315.5 201 75.6
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 3.8e-79 299.3 312 51.3
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 4.4e-75 285.8 308 48.1
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.2e-74 283.5 231 61.9
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.8e-66 256.5 315 44.1
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 5.2e-60 235.7 328 40.9
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 6.8e-60 235.3 154 71.4
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 8.9e-60 235.0 288 42.4
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.2e-59 234.6 196 60.7
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.7e-58 230.7 234 53.8
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 6.1e-53 212.2 338 39.6
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 3.4e-51 206.5 183 60.1
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 4.4e-51 206.1 177 63.3
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 3.2e-49 199.9 376 36.7
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 1.2e-45 188.0 119 69.7
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 8.1e-29 132.1 113 48.7
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.3e-26 124.8 116 51.7
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 4.6e-24 116.3 90 54.4
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.7e-23 114.4 118 51.7
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 5.1e-23 112.8 123 49.6
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 2.0e-19 100.9 87 66.7
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 4.8e-13 79.7 72 52.8
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 4.5e-11 73.2 61 50.8
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 8.4e-10 68.9 63 54.0
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 1.1e-09 68.6 36 80.6
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 6.0e-08 62.8 53 52.8
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 3.3e-06 57.0 48 60.4


User provided reference genes

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