Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 4.4e-214 747.7 371 100.0
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 1.3e-189 666.4 376 89.1
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 1.5e-174 616.3 372 82.0
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 2.6e-174 615.5 372 82.5
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 5.5e-156 554.7 372 74.5
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 1.0e-154 550.4 370 72.7
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 1.7e-149 533.1 377 71.1
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 4.2e-148 528.5 373 69.4
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 2.2e-141 506.1 380 67.9
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 2.5e-140 502.7 372 67.2
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 5.7e-137 491.5 359 68.2
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 9.7e-137 490.7 370 64.9
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 2.2e-136 489.6 372 64.8
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 6.9e-135 484.6 376 65.7
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.2e-134 483.8 372 65.3
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 1.0e-133 480.7 333 69.7
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 8.5e-133 477.6 371 63.1
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 4.7e-131 471.9 371 62.5
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 3.5e-126 455.7 355 63.9
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 1.9e-124 449.9 380 62.4
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 8.8e-114 414.5 365 55.9
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 4.1e-111 405.6 288 68.1
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 9.1e-111 404.4 387 54.0
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 2.2e-109 399.8 368 55.2
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 5.0e-109 398.7 361 54.6
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 1.2e-105 387.5 384 52.1
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 2.6e-105 386.3 383 51.4
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.3e-104 384.0 362 53.0
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 3.1e-103 379.4 374 52.1
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 2.7e-102 376.3 385 52.5
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 4.5e-102 375.6 384 50.5
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 2.9e-101 372.9 383 51.7
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.5e-100 370.5 358 50.6
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 5.6e-100 368.6 374 48.9
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 5.6e-100 368.6 377 50.9
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.2e-99 367.5 370 50.8
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 1.6e-99 367.1 382 48.2
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 4.7e-99 365.5 380 48.2
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 1.4e-98 364.0 371 49.9
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.8e-98 363.6 375 49.3
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 5.2e-98 362.1 365 48.5
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 6.8e-98 361.7 378 47.9
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.2e-97 360.9 375 49.1
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.7e-97 358.6 375 48.3
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 5.7e-97 358.6 380 50.5
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.5e-97 358.2 382 49.5
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.4e-96 355.1 377 49.1
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 1.4e-95 354.0 365 48.5
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.4e-95 353.2 377 48.5
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 5.4e-95 352.1 369 48.5
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.4e-95 352.1 383 49.1
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.4e-95 352.1 377 48.3
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 7.0e-95 351.7 373 48.8
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.0e-95 351.7 370 50.0
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 7.0e-95 351.7 382 48.7
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 7.0e-95 351.7 374 49.5
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.5e-92 344.0 376 48.7
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 1.9e-92 343.6 369 47.7
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.3e-92 342.8 379 49.6
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 2.1e-91 340.1 365 49.3
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 1.0e-90 337.8 369 45.8
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 1.8e-90 337.0 321 53.6
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 5.2e-90 335.5 344 48.0
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 2.0e-89 333.6 371 48.0
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 4.4e-89 332.4 343 48.1
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.3e-88 330.9 374 47.3
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.7e-88 330.5 346 48.3
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 1.1e-87 327.8 368 45.4
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.1e-87 327.8 375 47.7
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.4e-87 326.6 388 45.6
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 3.2e-87 326.2 372 44.1
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 4.1e-87 325.9 372 45.2
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 1.6e-86 323.9 370 46.2
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 2.0e-86 323.6 374 45.5
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 3.5e-86 322.8 373 46.1
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 6.0e-86 322.0 370 45.9
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 3.9e-85 319.3 373 44.2
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 3.9e-85 319.3 374 44.9
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 8.6e-85 318.2 375 44.3
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 1.9e-84 317.0 376 45.5
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 1.9e-84 317.0 376 45.5
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.9e-84 317.0 342 47.7
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 2.5e-84 316.6 375 45.9
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 7.3e-84 315.1 346 46.0
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 9.5e-84 314.7 371 45.6
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 9.5e-84 314.7 345 45.8
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 8.1e-83 311.6 368 45.4
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 8.1e-83 311.6 363 45.7
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.4e-82 310.8 371 46.4
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.1e-82 309.7 382 44.8
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 4.0e-82 309.3 344 46.8
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 5.2e-82 308.9 345 44.9
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 5.2e-82 308.9 339 47.5
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 6.8e-82 308.5 342 48.0
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 1.2e-81 307.8 294 52.4
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 2.0e-81 307.0 339 47.2
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 1.7e-80 303.9 308 49.7
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 1.2e-78 297.7 377 45.1
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 2.7e-78 296.6 397 42.6
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.7e-77 293.9 263 52.9
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 3.0e-77 293.1 367 44.4
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 3.9e-77 292.7 398 41.2
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.1e-76 291.2 321 45.8
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 4.3e-76 289.3 322 47.5
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 7.3e-76 288.5 368 42.7
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 9.5e-76 288.1 323 46.7
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 1.6e-75 287.3 307 49.2
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 2.1e-75 287.0 370 41.1
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 6.2e-75 285.4 372 41.9
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 8.1e-75 285.0 362 43.9
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.0e-69 268.1 337 42.7
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 1.7e-69 267.3 386 38.6
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 6.6e-69 265.4 368 40.2
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.8e-66 257.3 330 42.7
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.6e-65 253.4 348 37.9
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.4e-65 252.7 234 53.4
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 9.9e-65 251.5 313 45.7
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 6.4e-64 248.8 402 37.1
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.4e-63 247.7 370 37.3
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 7.1e-63 245.4 397 35.5
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 8.7e-61 238.4 280 45.0
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 6.2e-59 232.3 461 34.3
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 3.4e-57 226.5 263 44.9
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 5.8e-57 225.7 376 34.6
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 2.2e-56 223.8 343 38.8
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 3.8e-56 223.0 368 35.3
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 1.8e-53 214.2 265 42.6
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.1e-42 178.3 334 34.7
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.6e-38 164.5 274 33.9
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.8e-34 151.0 229 37.1
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 4.2e-23 113.2 143 44.1
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 2.7e-22 110.5 241 29.0
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.4e-21 108.2 87 57.5
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 3.7e-19 100.1 133 37.6
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 4.1e-18 96.7 150 30.7
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 8.5e-16 89.0 308 23.7
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 1.9e-15 87.8 177 31.6
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.6e-14 84.7 113 33.6
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 6.1e-14 82.8 175 30.9
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 7.9e-14 82.4 68 55.9
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 2.6e-12 77.4 52 61.5
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 5.7e-12 76.3 157 25.5
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 4.1e-10 70.1 88 38.6
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 2.9e-08 63.9 43 65.1
arahy.Tifrunner.gnm1.ann1.F124GG Arachis hypogaea HOM05D033213 ORTHO05D086251 8.0e-06 55.8 38 65.8


User provided reference genes

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