Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 6.2e-70 267.3 133 100.0
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 2.2e-59 232.3 133 87.2
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 8.8e-56 220.3 131 81.7
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 1.5e-55 219.5 131 82.4
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.8e-54 215.3 133 79.7
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.4e-53 212.2 130 80.0
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 7.7e-52 207.2 131 78.6
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 6.5e-51 204.1 134 76.1
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 3.9e-48 194.9 130 74.6
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.4e-45 186.4 130 70.0
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 2.4e-45 185.7 127 72.4
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 2.4e-45 185.7 130 69.2
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 3.1e-45 185.3 125 70.4
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 7.0e-45 184.1 130 70.0
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 9.1e-45 183.7 127 69.3
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.2e-44 183.3 128 71.9
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.5e-44 183.0 127 73.2
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 2.6e-44 182.2 130 70.0
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 3.5e-44 181.8 130 69.2
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 3.5e-44 181.8 133 68.4
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 7.7e-44 180.6 127 70.1
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 1.0e-43 180.3 128 71.9
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.3e-43 179.9 128 68.8
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 1.7e-43 179.5 127 70.1
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.7e-43 179.5 127 70.1
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.7e-43 179.5 127 70.1
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.7e-43 179.5 127 70.1
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.7e-43 179.5 129 68.2
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.9e-43 178.7 127 70.1
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 3.8e-43 178.3 127 67.7
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.5e-43 177.6 126 69.8
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 8.5e-43 177.2 128 68.0
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 8.5e-43 177.2 129 72.9
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 8.5e-43 177.2 125 68.8
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 1.1e-42 176.8 128 71.1
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.4e-42 176.4 127 68.5
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.4e-42 176.4 127 69.3
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 1.4e-42 176.4 128 71.1
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.9e-42 176.0 131 67.9
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 2.5e-42 175.6 128 68.8
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.5e-42 175.6 127 69.3
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 2.5e-42 175.6 128 68.0
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 3.2e-42 175.3 127 66.9
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 3.2e-42 175.3 127 69.3
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 4.2e-42 174.9 128 70.3
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 5.5e-42 174.5 128 71.1
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 7.2e-42 174.1 120 72.5
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 7.2e-42 174.1 122 71.3
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 9.4e-42 173.7 124 68.5
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 9.4e-42 173.7 128 66.4
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 1.6e-41 172.9 127 68.5
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.6e-41 172.9 128 68.8
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 1.6e-41 172.9 123 71.5
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.6e-41 172.9 127 70.1
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.6e-41 171.8 120 70.8
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 3.6e-41 171.8 125 70.4
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 4.7e-41 171.4 121 70.2
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 4.7e-41 171.4 125 71.2
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.1e-41 171.0 120 71.7
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 8.0e-41 170.6 123 68.3
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 8.0e-41 170.6 119 72.3
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.0e-40 170.2 128 68.8
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 1.0e-40 170.2 128 67.2
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 1.8e-40 169.5 120 70.0
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 3.0e-40 168.7 120 72.5
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 3.0e-40 168.7 128 66.4
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 3.0e-40 168.7 120 70.0
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 3.9e-40 168.3 122 67.2
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 3.9e-40 168.3 123 66.7
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 3.9e-40 168.3 123 69.1
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 3.9e-40 168.3 128 67.2
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 5.2e-40 167.9 130 65.4
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 5.2e-40 167.9 119 70.6
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 1.1e-39 166.8 120 71.7
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.1e-39 166.8 130 66.2
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.1e-39 166.8 127 66.9
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.1e-39 166.8 125 64.8
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.5e-39 166.4 120 69.2
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 1.5e-39 166.4 127 66.9
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 2.6e-39 165.6 125 65.6
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.6e-39 165.6 120 70.0
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.6e-39 165.6 120 70.0
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 3.3e-39 165.2 127 64.6
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 3.3e-39 165.2 128 65.6
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 4.4e-39 164.9 121 66.1
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.7e-38 162.9 119 68.1
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.2e-38 162.5 120 68.3
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 2.8e-38 162.2 125 66.4
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 3.7e-38 161.8 120 66.7
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.7e-38 161.8 119 68.9
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.7e-38 161.8 134 64.2
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 3.7e-38 161.8 125 64.0
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 8.2e-38 160.6 130 63.8
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 8.2e-38 160.6 128 60.9
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.1e-37 160.2 131 60.3
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 2.4e-37 159.1 128 60.2
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 3.1e-37 158.7 126 61.1
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 4.1e-37 158.3 119 66.4
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 4.1e-37 158.3 127 65.4
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 9.1e-37 157.1 120 63.3
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 9.1e-37 157.1 125 61.6
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 1.2e-36 156.8 119 64.7
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.6e-36 156.4 125 63.2
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 1.6e-36 156.4 120 64.2
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 2.6e-36 155.6 110 70.9
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 7.7e-36 154.1 129 57.4
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 7.7e-36 154.1 125 60.0
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.0e-35 153.7 125 59.2
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 1.7e-35 152.9 128 59.4
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.2e-35 152.5 126 60.3
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.2e-35 152.5 130 60.0
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 2.9e-35 152.1 120 61.7
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 2.9e-35 152.1 132 56.8
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 2.9e-35 152.1 132 53.8
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 5.0e-35 151.4 120 62.5
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.5e-34 149.8 127 56.7
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.9e-34 149.4 120 60.0
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 2.5e-34 149.1 119 60.5
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 4.2e-34 148.3 117 62.4
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 7.2e-34 147.5 120 62.5
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 7.2e-34 147.5 119 60.5
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.1e-33 146.0 129 56.6
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.1e-33 146.0 129 57.4
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 3.6e-33 145.2 120 58.3
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 3.6e-33 145.2 120 59.2
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 3.6e-33 145.2 120 59.2
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 3.6e-33 145.2 120 59.2
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 3.6e-33 145.2 119 58.8
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 4.7e-33 144.8 119 59.7
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 4.7e-33 144.8 118 59.3
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 6.1e-33 144.4 120 57.5
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 6.1e-33 144.4 120 57.5
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.0e-32 143.7 127 55.1
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.4e-32 143.3 120 57.5
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.4e-32 143.3 121 57.9
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 2.3e-32 142.5 129 54.3
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 4.0e-32 141.7 110 67.3
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 4.0e-32 141.7 119 58.8
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 5.2e-32 141.4 130 56.9
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 6.8e-32 141.0 120 56.7
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.8e-32 140.6 104 68.3
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.0e-31 139.4 114 63.2
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 3.4e-31 138.7 98 70.4
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 3.4e-31 138.7 112 60.7
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 5.7e-31 137.9 124 55.6
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 9.7e-31 137.1 120 56.7
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 9.7e-31 137.1 120 56.7
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 9.7e-31 137.1 125 55.2
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 9.7e-31 137.1 114 63.2
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.8e-30 135.6 123 56.9
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 2.8e-30 135.6 116 60.3
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 6.3e-30 134.4 119 59.7
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 3.5e-28 128.6 118 53.4
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 3.8e-27 125.2 136 49.3
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 5.0e-27 124.8 107 59.8
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 4.2e-26 121.7 120 53.3
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.1e-25 119.4 119 50.4
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 5.9e-20 101.3 79 67.1
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 5.0e-19 98.2 63 81.0
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.1e-18 97.1 65 69.2
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 1.9e-18 96.3 63 77.8
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 3.3e-18 95.5 67 71.6
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.6e-15 85.9 57 71.9
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 2.2e-14 82.8 112 38.4
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.7e-14 82.0 65 67.7
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.7e-14 82.0 65 67.7
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 6.3e-14 81.3 63 65.1
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 6.3e-14 81.3 115 41.7
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.8e-13 79.7 81 58.0
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 5.9e-12 74.7 62 53.2
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.0e-11 73.9 50 70.0
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.9e-11 72.4 98 40.8
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.9e-11 72.0 49 69.4
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 1.2e-09 67.0 52 65.4
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.6e-09 66.6 68 55.9
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 2.8e-09 65.9 60 58.3


User provided reference genes

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