Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G031100 Glycine max HOM05D007525 ORTHO05D003398 4.8e-105 384.4 184 100.0
VMungo0331G0679 Vigna mungo HOM05D007525 ORTHO05D003398 2.7e-87 325.5 199 79.9
Phvul.010G105000 Phaseolus vulgaris HOM05D007525 ORTHO05D003398 5.0e-86 321.2 198 79.8
Ca_03496_v3 Cicer arietinum L. HOM05D007525 ORTHO05D003398 6.4e-81 304.3 198 73.7
Psat4g157560 Pisum sativum HOM05D007525 ORTHO05D003398 1.2e-79 300.1 202 73.3
Lj3g0004891 Lotus japonicus HOM05D007525 ORTHO05D003398 3.2e-72 275.4 169 77.5
Medtr8g028545 Medicago truncatula HOM05D007525 ORTHO05D003398 5.4e-72 274.6 207 69.6
Lalb_Chr10g0096641 Lupinus albus HOM05D007525 ORTHO05D003398 6.6e-70 267.7 197 68.0
Actinidia10060 Actinidia chinensis HOM05D007525 ORTHO05D003398 3.8e-65 251.9 207 61.4
CiPaw.01G065400 Carya illinoinensis HOM05D007525 ORTHO05D003398 3.8e-65 251.9 173 70.5
GSVIVG01026980001 Vitis vinifera HOM05D007525 ORTHO05D003398 3.2e-64 248.8 206 59.7
Manes.05G030450 Manihot esculenta HOM05D007525 ORTHO05D003398 7.1e-64 247.7 198 62.6
TAR636G1192 Trochodendron aralioides HOM05D007525 ORTHO05D003398 9.3e-64 247.3 199 62.8
Cfa003884 Carpinus fangiana HOM05D007525 ORTHO05D003398 5.1e-62 241.5 199 61.8
CSS0031135 Camellia sinensis var. sinensis HOM05D007525 ORTHO05D003398 4.3e-61 238.4 214 57.9
COL.COLO4_12762 Corchorus olitorius HOM05D007525 ORTHO05D003398 4.3e-61 238.4 182 64.8
Potri.002G162800 Populus trichocarpa HOM05D007525 ORTHO05D003398 5.6e-61 238.0 207 57.0
Lj7A509T109 Lonicera japonica HOM05D007525 ORTHO05D003398 1.3e-60 236.9 183 63.9
Duzib133G0712 Durio zibethinus HOM05D007525 ORTHO05D003398 1.6e-60 236.5 205 60.0
Thecc.01G354100 Theobroma cacao HOM05D007525 ORTHO05D003398 2.8e-60 235.7 187 62.6
Eucgr.E00102 Eucalyptus grandis HOM05D007525 ORTHO05D003398 3.6e-60 235.3 187 61.0
Nn1g01647 Nelumbo nucifera HOM05D007525 ORTHO05D003398 6.2e-60 234.6 182 62.6
RcHm_v2.0_Chr1g0357281 Rosa chinensis HOM05D007525 ORTHO05D003398 1.1e-59 233.8 210 60.0
Sabra02G0147700 Salix brachista HOM05D007525 ORTHO05D003398 2.4e-59 232.6 208 57.2
Cpa.g.sc184.25 Carica papaya HOM05D007525 ORTHO05D003398 6.9e-59 231.1 210 56.2
AUR62022606 Chenopodium quinoa HOM05D007525 ORTHO05D003398 9.0e-59 230.7 214 55.6
MD01G1069500 Malus domestica HOM05D007525 ORTHO05D003398 9.0e-59 230.7 198 62.1
Prupe.2G175600 Prunus persica HOM05D007525 ORTHO05D003398 9.0e-59 230.7 190 62.1
CANSAT56G0175 Cannabis sativa HOM05D007525 ORTHO05D003398 1.2e-58 230.3 209 58.9
MELO3C021185.2 Cucumis melo HOM05D007525 ORTHO05D003398 1.2e-58 230.3 182 62.6
Atru.chr5.548 Acer truncatum HOM05D007525 ORTHO05D003398 2.0e-58 229.6 204 58.8
Rhsim07G0011500 Rhododendron simsii HOM05D001943 ORTHO05D001969 3.4e-58 228.8 196 59.2
TPR.G28291 Trifolium pratense HOM05D007525 ORTHO05D003398 3.4e-58 228.8 153 75.8
PGR042G3120 Punica granatum HOM05D007525 ORTHO05D003398 4.4e-58 228.4 195 59.5
Gohir.D07G146200 Gossypium hirsutum HOM05D007525 ORTHO05D003398 7.6e-58 227.6 182 62.6
Gorai.001G158400 Gossypium raimondii HOM05D007525 ORTHO05D003398 7.6e-58 227.6 182 62.6
FvH4_7g15085 Fragaria vesca HOM05D007525 ORTHO05D003398 1.3e-57 226.9 200 60.5
EL10Ac1g00368 Beta vulgaris HOM05D007525 ORTHO05D003398 1.7e-57 226.5 190 58.9
CsaV3_6G000860 Cucumis sativus L. HOM05D007525 ORTHO05D003398 1.7e-57 226.5 182 62.1
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.2e-57 226.1 200 60.5
Migut.N01460 Erythranthe guttata HOM05D007525 ORTHO05D003398 6.4e-57 224.6 182 61.0
Gohir.A07G140800 Gossypium hirsutum HOM05D007525 ORTHO05D003398 6.4e-57 224.6 182 62.6
TWI59G1390 Tripterygium wilfordii HOM05D007525 ORTHO05D003398 6.4e-57 224.6 207 56.5
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.4e-57 224.2 195 61.0
AT2G46100 Arabidopsis thaliana HOM05D007525 ORTHO05D003398 1.4e-56 223.4 175 62.9
AUR62004400 Chenopodium quinoa HOM05D007525 ORTHO05D003398 1.4e-56 223.4 198 56.1
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.4e-56 223.4 200 60.0
Sopen01g038780 Solanum pennellii HOM05D007525 ORTHO05D003398 1.4e-56 223.4 197 57.9
Solyc01g095000.3 Solanum lycopersicum HOM05D007525 ORTHO05D003398 1.9e-56 223.0 197 57.9
Carub.0004s2880 Capsella rubella HOM05D007525 ORTHO05D003398 2.4e-56 222.6 175 62.3
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.4e-56 222.6 195 61.0
Peaxi162Scf00020g00126 Petunia axillaris HOM05D007525 ORTHO05D003398 2.4e-56 222.6 220 54.5
AL4G45330 Arabidopsis lyrata HOM05D007525 ORTHO05D003398 5.4e-56 221.5 175 61.7
Sp4g28160 Schrenkiella parvula HOM05D007525 ORTHO05D003398 7.1e-56 221.1 199 56.3
Ciclev10022006m.g Citrus clementina HOM05D007525 ORTHO05D003398 2.7e-55 219.2 178 60.1
Thhalv10001607m.g Eutrema salsugineum HOM05D007525 ORTHO05D003398 3.5e-55 218.8 176 60.2
MSTRG.4841 Avicennia marina HOM05D007525 ORTHO05D003398 1.0e-54 217.2 222 52.3
ClCG06G003450 Citrullus lanatus HOM05D007525 ORTHO05D003398 1.3e-54 216.9 188 59.6
PGSC0003DMG400000187 Solanum tuberosum HOM05D007525 ORTHO05D003398 1.3e-54 216.9 162 66.0
CAN.G78.117 Capsicum annuum HOM05D007525 ORTHO05D003398 2.3e-54 216.1 158 65.8
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 3.9e-54 215.3 195 57.9
Ah.05g180250 Amaranthus hybridus HOM05D007525 ORTHO05D003398 3.9e-54 215.3 207 55.6
Oeu036594.1 Olea europaea HOM05D007525 ORTHO05D003398 3.9e-54 215.3 177 58.8
Aqoxy7G00302 Aquilegia oxysepala HOM05D007525 ORTHO05D003398 5.1e-54 214.9 191 55.5
CDE12G0297 Ceratophyllum demersum HOM05D007525 ORTHO05D003398 6.6e-54 214.5 185 56.8
vmacro13241 Vaccinium macrocarpon HOM05D007525 ORTHO05D003398 8.7e-54 214.2 151 68.9
Nitab4.5_0000915g0170 Nicotiana tabacum HOM05D007525 ORTHO05D003398 1.1e-53 213.8 188 56.9
SalBow5G0215 Salvia bowleyana HOM05D007525 ORTHO05D003398 1.5e-53 213.4 206 55.3
A05p06060 Brassica napus HOM05D007525 ORTHO05D003398 5.6e-53 211.5 171 60.2
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 7.3e-53 211.1 171 59.6
Nitab4.5_0010703g0010 Nicotiana tabacum HOM05D007525 ORTHO05D003398 9.6e-53 210.7 188 56.9
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 6.2e-52 208.0 171 59.1
PSO478G5123 Papaver somniferum HOM05D007525 ORTHO05D003398 6.2e-52 208.0 185 57.3
unitig_22.g6725 Utricularia gibba HOM05D007525 ORTHO05D003398 8.1e-52 207.6 171 59.6
SGA_v2.0_scaffold43G16396 Striga asiatica HOM05D007525 ORTHO05D003398 4.0e-51 205.3 218 48.2
ECA240G1228 Erigeron canadensis HOM05D007525 ORTHO05D003398 5.3e-51 204.9 226 48.7
ATR0661G217 Amborella trichopoda HOM05D007525 ORTHO05D003398 1.5e-50 203.4 184 55.4
Os04g0578200 Oryza sativa ssp. japonica HOM05D007525 ORTHO05D003398 1.5e-50 203.4 186 56.5
Zm00001eb073280 Zea mays HOM05D007525 ORTHO05D003398 2.6e-50 202.6 203 54.7
HPP92_021017 Vanilla planifolia HOM05D007525 ORTHO05D003398 7.6e-50 201.1 195 50.8
Cc00_g17820 Coffea canephora HOM05D007525 ORTHO05D003398 8.4e-49 197.6 151 62.9
HanXRQChr03g0093451 Helianthus annuus HOM05D007525 ORTHO05D003398 1.1e-48 197.2 169 59.2
THA.LOC104817313 Tarenaya hassleriana HOM05D007525 ORTHO05D003398 1.1e-48 197.2 203 49.3
MBI04_g26962_MAGBIO Magnolia biondii HOM05D007525 ORTHO05D003398 1.4e-48 196.8 175 61.1
QL04p055069 Quercus lobata HOM05D007525 ORTHO05D003398 4.2e-48 195.3 335 38.2
Lsat_1_v5_gn_3_138380 Lactuca sativa HOM05D007525 ORTHO05D003398 2.5e-45 186.0 197 51.3
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 1.2e-42 177.2 154 57.8
Sc23g0002640 Simmondsia chinensis HOM05D007525 ORTHO05D003398 1.0e-41 174.1 144 61.8
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 2.3e-38 162.9 77 89.6
Haze_15550 Corylus avellana HOM05D007525 ORTHO05D003398 8.7e-38 161.0 211 48.3
DCAR_025212 Daucus carota HOM05D001555 ORTHO05D001616 5.7e-37 158.3 103 68.9
Mapoly0153s0018 Marchantia polymorpha HOM05D007525 ORTHO05D003398 1.4e-32 143.7 155 44.5
Sed0025619 Sechium edule HOM05D007525 ORTHO05D003398 3.9e-30 135.6 165 49.1
TPR.G28505 Trifolium pratense HOM05D007525 ORTHO05D003398 1.1e-27 127.5 79 79.7
AagrBONN_evm.TU.Sc2ySwM_228.1193 Anthoceros agrestis HOM05D007525 ORTHO05D003398 1.4e-27 127.1 138 43.5
SMO358G0422 Selaginella moellendorffii HOM05D007525 ORTHO05D003398 1.8e-27 126.7 154 39.0
CBR_g31994 Chara braunii HOM05D007525 ORTHO05D003398 5.3e-27 125.2 164 37.8
Pp3c4_17920 Physcomitrium patens HOM05D007525 ORTHO05D003398 9.4e-24 114.4 166 38.0
Manes.17G000837 Manihot esculenta HOM05D007525 ORTHO05D003398 1.5e-21 107.1 50 86.0
MCO05G605 Micromonas commoda HOM05D007525 ORTHO05D003398 5.3e-19 98.6 156 34.0
Cre06.g292400 Chlamydomonas reinhardtii HOM05D007525 ORTHO05D003398 1.2e-18 97.4 165 30.9
SEGI_20701 Sequoiadendron giganteum HOM05D007525 ORTHO05D003398 4.7e-15 85.5 40 80.0
Medtr4g037265 Medicago truncatula HOM05D007525 ORTHO05D003398 2.6e-13 79.7 51 72.5
Medtr4g037255 Medicago truncatula HOM05D007525 ORTHO05D003398 1.1e-11 74.3 82 50.0
Zm00001eb250490 Zea mays HOM05D007525 ORTHO05D003398 1.4e-11 73.9 45 73.3
CARHR141360 Cardamine hirsuta HOM05D007525 ORTHO05D003398 1.8e-11 73.6 83 48.2
Zm00001eb036490 Zea mays HOM05D007525 ORTHO05D003398 1.8e-11 73.6 65 53.8
PRCOL_00006625 Prasinoderma coloniale HOM05D007525 ORTHO05D003398 4.5e-10 68.9 110 30.9
Phvul.007G186100 Phaseolus vulgaris HOM05D006905 ORTHO05D003398 1.0e-09 67.8 169 30.2
CAN.G134.166 Capsicum annuum HOM05D006905 ORTHO05D003398 2.9e-09 66.2 166 29.5
Migut.N01907 Erythranthe guttata HOM05D006905 ORTHO05D003398 5.0e-09 65.5 183 27.3
CARHR079160 Cardamine hirsuta HOM05D006905 ORTHO05D003398 6.5e-09 65.1 169 28.4
AL3G15180 Arabidopsis lyrata HOM05D006905 ORTHO05D003398 1.9e-08 63.5 177 25.4
COL.COLO4_38037 Corchorus olitorius HOM05D006905 ORTHO05D003398 3.2e-08 62.8 177 26.6
Duzib128G0775 Durio zibethinus HOM05D006905 ORTHO05D003398 3.2e-08 62.8 175 26.3
Nitab4.5_0013433g0040 Nicotiana tabacum HOM05D006905 ORTHO05D003398 3.2e-08 62.8 177 27.1
Carub.0003s0409 Capsella rubella HOM05D006905 ORTHO05D003398 9.4e-08 61.2 175 28.6
vmacro05070 Vaccinium macrocarpon HOM05D006905 ORTHO05D003398 9.4e-08 61.2 196 27.0
Thhalv10021425m.g Eutrema salsugineum HOM05D006905 ORTHO05D003398 2.7e-07 59.7 166 29.5
MBI04_g20814_MAGBIO Magnolia biondii HOM05D006905 ORTHO05D003398 4.7e-07 58.9 186 26.3
FAN02G2898 Fragaria x ananassa HOM05D006905 ORTHO05D003398 6.1e-07 58.5 167 25.1
FvH4_6g03440 Fragaria vesca HOM05D006905 ORTHO05D003398 8.0e-07 58.2 169 25.4
Glyma.10G160600 Glycine max HOM05D006905 ORTHO05D003398 8.0e-07 58.2 191 28.3
THA.LOC104802823 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 8.0e-07 58.2 178 24.7
PGR083G1281 Punica granatum HOM05D006905 ORTHO05D003398 1.0e-06 57.8 166 27.7
FAN09G1595 Fragaria x ananassa HOM05D006905 ORTHO05D003398 1.4e-06 57.4 167 25.7
PGR083G0691 Punica granatum HOM05D006905 ORTHO05D003398 1.4e-06 57.4 166 27.7
Sp3g03710 Schrenkiella parvula HOM05D006905 ORTHO05D003398 1.8e-06 57.0 176 27.3
Cpa.g.sc117.65 Carica papaya HOM05D006905 ORTHO05D003398 2.3e-06 56.6 172 27.3
FAN14G2439 Fragaria x ananassa HOM05D006905 ORTHO05D003398 3.0e-06 56.2 169 24.9
Gorai.004G263200 Gossypium raimondii HOM05D006905 ORTHO05D003398 3.0e-06 56.2 178 25.8
Thecc.05G193600 Theobroma cacao HOM05D006905 ORTHO05D003398 3.0e-06 56.2 170 25.9
CSS0017923 Camellia sinensis var. sinensis HOM05D006905 ORTHO05D003398 4.0e-06 55.8 184 27.7
FAN05G2111 Fragaria x ananassa HOM05D006905 ORTHO05D003398 6.7e-06 55.1 173 24.9
Gohir.D08G246700 Gossypium hirsutum HOM05D006905 ORTHO05D003398 6.7e-06 55.1 178 25.8
AT3G04890 Arabidopsis thaliana HOM05D006905 ORTHO05D003398 8.8e-06 54.7 166 24.7


User provided reference genes

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