Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 0.0e+00 1435.6 788 100.0
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 0.0e+00 1307.7 788 90.4
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 0.0e+00 1135.6 816 77.3
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 2.3e-297 1025.4 788 75.9
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 1.4e-294 1016.1 792 72.1
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 3.4e-272 941.8 796 68.7
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 5.4e-262 907.9 798 67.3
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 5.4e-262 907.9 798 67.0
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 8.1e-258 894.0 798 65.5
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 3.4e-256 888.6 796 66.8
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 6.2e-250 867.8 820 65.0
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 1.1e-249 867.1 801 64.0
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 3.4e-248 862.1 794 64.9
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 7.6e-248 860.9 797 63.9
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 7.8e-245 850.9 800 64.8
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.9e-243 846.3 799 62.8
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 3.0e-236 822.4 800 63.2
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 2.9e-231 805.8 809 59.2
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 2.8e-226 789.3 807 59.1
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 2.9e-223 779.2 801 59.1
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.4e-222 776.9 820 59.9
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 1.5e-219 766.9 796 57.7
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 3.4e-216 755.7 813 56.2
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 5.0e-215 751.9 790 57.7
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 5.7e-211 738.4 796 56.5
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 1.6e-210 736.9 800 57.1
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 1.6e-210 736.9 795 56.4
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 3.7e-210 735.7 799 56.9
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 9.0e-209 731.1 631 67.4
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 1.2e-208 730.7 803 57.9
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.9e-207 726.1 792 55.9
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.1e-206 724.2 793 56.0
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 4.2e-206 722.2 808 55.8
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.2e-205 720.7 796 55.5
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 4.6e-205 718.8 739 60.8
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 2.5e-203 713.0 801 56.2
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 3.3e-203 712.6 805 55.5
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 5.7e-203 711.8 800 56.0
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 9.7e-203 711.1 819 53.5
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 8.2e-202 708.0 796 55.7
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 1.1e-201 707.6 808 54.7
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.5e-200 703.7 816 52.5
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.0e-199 701.0 796 55.3
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.0e-199 701.0 796 55.4
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 4.7e-197 692.2 810 53.0
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 8.8e-196 688.0 737 59.0
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.1e-195 687.6 820 53.8
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 6.3e-194 681.8 794 53.1
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 5.3e-193 678.7 520 72.7
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 2.0e-192 676.8 805 52.2
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 1.3e-191 674.1 839 52.4
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 6.1e-189 665.2 800 53.5
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 1.5e-187 660.6 838 49.4
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.1e-185 654.4 945 46.0
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 2.4e-185 653.3 796 54.5
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 2.7e-184 649.8 803 53.1
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 3.8e-183 646.0 803 53.8
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 1.5e-182 644.0 794 50.9
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.5e-182 643.3 778 52.2
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 3.0e-180 636.3 793 53.3
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.0e-180 636.0 793 51.7
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.4e-179 632.5 808 50.2
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 2.0e-176 623.6 789 50.2
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.0e-175 621.3 795 53.1
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 1.7e-175 620.5 831 48.6
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 3.2e-174 616.3 798 49.9
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 5.5e-174 615.5 793 50.3
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 8.0e-173 611.7 794 49.7
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 1.5e-171 607.4 784 50.6
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 4.4e-171 605.9 788 50.1
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 9.8e-171 604.7 865 48.9
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 2.8e-170 603.2 799 50.3
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.1e-169 601.3 787 50.2
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 7.0e-169 598.6 792 48.7
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 9.2e-169 598.2 806 48.4
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 2.7e-168 596.7 808 48.4
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 1.0e-167 594.7 795 50.6
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 5.0e-167 592.4 794 51.6
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.5e-166 590.9 616 58.0
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 3.3e-166 589.7 798 52.1
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 5.6e-166 589.0 616 57.8
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 5.6e-166 589.0 794 49.4
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 1.4e-164 584.3 804 47.9
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 2.0e-163 580.5 801 49.2
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 2.0e-163 580.5 809 48.6
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 2.6e-163 580.1 796 49.2
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 2.6e-163 580.1 758 50.1
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 2.6e-163 580.1 795 48.8
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 7.5e-163 578.6 747 50.9
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 4.9e-162 575.9 747 51.4
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 6.4e-162 575.5 747 51.4
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 5.4e-161 572.4 788 50.0
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 7.0e-161 572.0 798 48.1
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 2.0e-160 570.5 754 50.4
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 1.0e-159 568.2 753 50.7
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 1.7e-159 567.4 753 50.7
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.3e-159 567.0 777 48.5
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 3.0e-159 566.6 753 50.7
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 6.6e-159 565.5 824 46.6
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 3.3e-158 563.1 712 53.5
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 5.6e-158 562.4 781 49.3
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 1.6e-157 560.8 749 49.7
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.3e-154 551.2 779 48.5
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 2.9e-154 550.1 785 47.0
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 7.8e-152 542.0 757 48.5
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.3e-151 541.2 806 46.2
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 2.3e-151 540.4 701 52.1
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 7.3e-150 535.4 780 49.1
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 9.5e-150 535.0 531 59.3
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.4e-148 531.2 814 45.9
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 1.8e-148 530.8 750 48.3
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 4.0e-148 529.6 750 50.3
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 2.9e-146 523.5 760 46.7
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 6.4e-146 522.3 814 44.0
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 1.9e-145 520.8 798 47.1
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 5.4e-145 519.2 779 48.5
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 5.1e-143 512.7 676 50.4
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 1.1e-140 505.0 750 47.2
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 3.1e-140 503.4 625 52.3
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 1.3e-138 498.0 796 46.4
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 2.2e-138 497.3 806 45.5
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 7.1e-137 492.3 780 43.5
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 1.2e-136 491.5 766 47.8
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 9.6e-134 481.9 793 45.4
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 3.1e-132 476.9 723 47.6
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 4.0e-132 476.5 805 42.7
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 3.2e-129 466.8 829 41.4
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 2.1e-128 464.2 783 44.6
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.3e-122 444.9 716 42.9
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 7.4e-118 429.1 858 39.4
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 2.1e-117 427.6 712 44.4
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 6.4e-114 416.0 490 55.1
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 4.6e-112 409.8 725 39.3
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 6.5e-106 389.4 387 60.2
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 4.6e-104 383.3 615 44.2
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 4.3e-94 350.1 389 55.0
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 4.2e-89 333.6 870 32.6
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 2.7e-88 330.9 380 53.7
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 5.7e-86 323.2 354 53.7
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 8.2e-77 292.7 380 48.7
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 3.2e-65 254.2 249 61.0
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 1.0e-58 232.6 293 50.5
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 8.8e-55 219.5 196 63.3
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 2.8e-53 214.5 404 40.8
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.8e-52 211.8 758 29.7
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.0e-50 206.1 776 30.0
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.6e-48 197.6 412 37.9
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 3.2e-44 184.5 176 59.7
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 1.0e-42 179.5 275 48.0
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 2.3e-42 178.3 220 46.4
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 8.0e-40 169.9 145 64.1
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 4.0e-31 141.0 183 51.9
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 3.9e-26 124.4 145 47.6
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 6.6e-26 123.6 109 65.1
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 2.8e-24 118.2 372 29.3
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 3.8e-21 107.8 122 48.4
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 2.4e-20 105.1 320 30.0
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.3e-18 98.6 189 39.7
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.6e-17 94.0 106 51.9
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 6.9e-15 87.0 113 48.7
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 6.9e-15 87.0 111 45.9
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.0e-14 85.5 88 59.1
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 7.6e-14 83.6 203 33.5
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 2.9e-13 81.6 238 31.5
arahy.Tifrunner.gnm1.ann1.W0C6E5 Arachis hypogaea HOM05D000200 ORTHO05D000262 1.1e-12 79.7 119 46.2
arahy.Tifrunner.gnm1.ann1.B4ZXCR Arachis hypogaea HOM05D003721 ORTHO05D004303 2.7e-11 75.1 77 55.8
arahy.Tifrunner.gnm1.ann1.2H8IEQ Arachis hypogaea HOM05D003721 ORTHO05D004303 6.0e-11 73.9 66 62.1
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 6.0e-11 73.9 161 39.1
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.3e-10 72.0 71 62.0
arahy.Tifrunner.gnm1.ann1.EAH0NM Arachis hypogaea HOM05D003721 ORTHO05D004303 3.9e-10 71.2 66 59.1
arahy.Tifrunner.gnm1.ann1.TR1UXP Arachis hypogaea HOM05D003721 ORTHO05D004303 3.9e-10 71.2 54 68.5
arahy.Tifrunner.gnm1.ann1.BE33XR Arachis hypogaea HOM05D003721 ORTHO05D004303 6.6e-10 70.5 51 72.5
arahy.Tifrunner.gnm1.ann1.4H30G8 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-09 69.3 66 59.1
arahy.Tifrunner.gnm1.ann1.0WEA7F Arachis hypogaea HOM05D003721 ORTHO05D004303 3.3e-09 68.2 54 64.8
Glyma.11G161738 Glycine max HOM05D003721 ORTHO05D004303 2.1e-08 65.5 42 81.0
CBR_g40298 Chara braunii HOM05D003721 ORTHO05D004303 3.6e-08 64.7 137 36.5
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 6.2e-08 63.9 157 38.2


User provided reference genes

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