Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 2.6e-71 271.9 135 100.0
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 2.5e-58 228.8 141 85.8
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 3.0e-35 152.1 124 66.9
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 1.5e-31 139.8 114 63.2
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 4.9e-22 108.2 127 53.5
TPR.G7659 Trifolium pratense HOM05D007041 ORTHO05D008036 1.9e-21 106.3 132 52.3
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 9.9e-15 84.0 125 45.6
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 1.3e-14 83.6 118 43.2
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 3.2e-13 79.0 61 67.2
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 3.5e-12 75.5 129 38.0
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 4.6e-12 75.1 122 40.2
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 6.0e-12 74.7 114 41.2
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 6.0e-12 74.7 70 51.4
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 7.9e-12 74.3 120 35.0
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 7.9e-12 74.3 122 40.2
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.0e-11 73.9 149 35.6
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 1.0e-11 73.9 94 45.7
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 3.0e-11 72.4 118 38.1
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 8.7e-11 70.9 81 45.7
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 8.7e-11 70.9 102 38.2
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 1.1e-10 70.5 120 34.2
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 1.5e-10 70.1 114 39.5
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 1.5e-10 70.1 120 40.8
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.9e-10 69.7 128 36.7
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 2.5e-10 69.3 129 37.2
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 3.3e-10 68.9 90 44.4
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 3.3e-10 68.9 107 42.1
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 3.3e-10 68.9 133 36.8
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 4.3e-10 68.6 112 40.2
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 4.3e-10 68.6 107 39.3
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 5.6e-10 68.2 88 48.9
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.6e-10 68.2 52 55.8
Lj1g0010364 Lotus japonicus HOM05D007041 ORTHO05D008036 5.6e-10 68.2 99 40.4
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.3e-09 67.0 127 36.2
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 2.1e-09 66.2 112 41.1
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 2.1e-09 66.2 114 42.1
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 3.7e-09 65.5 82 43.9
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 3.7e-09 65.5 126 34.9
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.7e-09 65.5 126 34.9
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.7e-09 65.5 52 53.8
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 3.7e-09 65.5 126 34.9
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 4.8e-09 65.1 103 43.7
Ca_09497_v3 Cicer arietinum L. HOM05D007041 ORTHO05D008036 6.2e-09 64.7 103 41.7
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 6.2e-09 64.7 99 45.5
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 1.1e-08 63.9 95 43.2
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 1.1e-08 63.9 58 56.9
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 1.8e-08 63.2 94 38.3
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 1.8e-08 63.2 97 40.2
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 1.8e-08 63.2 104 41.3
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 2.4e-08 62.8 112 37.5
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 2.4e-08 62.8 129 35.7
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 2.4e-08 62.8 39 66.7
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 3.1e-08 62.4 53 58.5
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 3.1e-08 62.4 109 36.7
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 3.1e-08 62.4 109 36.7
Lalb_Chr18g0044291 Lupinus albus HOM05D007041 ORTHO05D008036 3.1e-08 62.4 106 36.8
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 3.1e-08 62.4 90 44.4
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 3.1e-08 62.4 113 38.1
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 5.3e-08 61.6 91 44.0
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 5.3e-08 61.6 94 39.4
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 5.3e-08 61.6 55 52.7
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 5.3e-08 61.6 58 55.2
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 6.9e-08 61.2 53 54.7
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 9.0e-08 60.8 44 56.8
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 9.0e-08 60.8 132 32.6
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 1.5e-07 60.1 38 65.8
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.5e-07 60.1 40 65.0
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.5e-07 60.1 40 65.0
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.5e-07 60.1 42 59.5
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 2.0e-07 59.7 53 56.6
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 2.0e-07 59.7 40 62.5
Medtr7g117120 Medicago truncatula HOM05D007041 ORTHO05D008036 2.0e-07 59.7 101 39.6
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 2.6e-07 59.3 53 52.8
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 2.6e-07 59.3 53 52.8
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 2.6e-07 59.3 30 80.0
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 2.6e-07 59.3 30 80.0
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 2.6e-07 59.3 30 80.0
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 2.6e-07 59.3 29 82.8
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 3.4e-07 58.9 67 49.3
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 3.4e-07 58.9 135 30.4
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 3.4e-07 58.9 39 56.4
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 4.5e-07 58.5 30 80.0
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 4.5e-07 58.5 30 80.0
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.5e-07 58.5 40 62.5
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 4.5e-07 58.5 111 36.0
arahy.Tifrunner.gnm1.ann1.3XXF02 Arachis hypogaea HOM05D007041 ORTHO05D008036 7.6e-07 57.8 90 38.9
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 7.6e-07 57.8 35 68.6
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 1.0e-06 57.4 65 41.5
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 1.3e-06 57.0 125 32.0
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 1.3e-06 57.0 39 53.8
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 1.3e-06 57.0 39 53.8
MSTRG.13877 Avicennia marina HOM05D007041 ORTHO05D008036 1.7e-06 56.6 48 54.2
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 1.7e-06 56.6 94 39.4
PGSC0003DMG400000096 Solanum tuberosum HOM05D007041 ORTHO05D008036 1.7e-06 56.6 102 34.3
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 2.2e-06 56.2 38 60.5
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.9e-06 55.8 102 36.3
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 4.9e-06 55.1 123 31.7
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 4.9e-06 55.1 44 54.5
Nitab4.5_0004161g0040 Nicotiana tabacum HOM05D007041 ORTHO05D008036 6.5e-06 54.7 91 36.3
BcaB01g03218 Brassica carinata HOM05D010682 ORTHO05D012785 8.4e-06 54.3 39 61.5
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 8.4e-06 54.3 49 51.0


User provided reference genes

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