Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 0.0e+00 1112.4 546 100.0
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 1.0e-288 996.1 546 89.6
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 9.2e-285 983.0 546 88.1
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 1.7e-259 899.0 550 80.0
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 2.1e-252 875.5 546 78.9
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 1.7e-251 872.5 546 78.4
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 2.5e-250 868.6 548 78.3
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 1.8e-248 862.4 546 77.8
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 5.5e-229 797.7 543 71.5
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 3.5e-228 795.0 543 71.6
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 1.8e-200 703.0 549 65.0
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 5.9e-199 698.0 547 64.2
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 1.0e-198 697.2 551 63.5
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 2.9e-198 695.7 547 63.8
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 5.5e-197 691.4 547 63.3
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 2.7e-196 689.1 546 62.8
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 2.7e-196 689.1 548 63.5
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 1.8e-195 686.4 546 62.8
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 8.8e-195 684.1 541 63.2
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 8.8e-195 684.1 552 63.0
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 6.3e-193 677.9 548 63.0
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 3.5e-191 672.2 547 61.4
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 1.3e-190 670.2 546 62.5
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 4.2e-189 665.2 548 62.2
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 1.2e-188 663.7 552 62.0
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 1.0e-187 660.6 547 61.4
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 3.7e-185 652.1 540 59.1
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 4.8e-185 651.7 546 61.0
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 5.9e-183 644.8 544 60.5
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 4.2e-181 638.6 545 58.7
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 5.5e-181 638.3 542 59.6
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 2.7e-180 636.0 540 57.6
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 4.7e-180 635.2 542 58.7
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 1.8e-179 633.3 548 58.8
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 6.8e-179 631.3 565 56.5
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 2.0e-178 629.8 544 57.4
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 5.7e-178 628.2 542 58.5
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 2.2e-177 626.3 545 56.7
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 4.8e-177 625.2 546 57.7
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 1.1e-176 624.0 545 58.5
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 1.4e-176 623.6 639 54.1
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 1.8e-176 623.2 547 56.5
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 4.1e-176 622.1 543 56.4
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 4.1e-176 622.1 545 56.7
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 4.1e-176 622.1 543 56.4
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 1.6e-175 620.2 547 59.0
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 2.7e-175 619.4 546 56.0
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 5.9e-175 618.2 543 56.9
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 2.9e-174 615.9 505 60.4
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 5.0e-174 615.1 544 57.9
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 2.5e-173 612.8 546 56.2
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 3.2e-173 612.5 546 56.0
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 3.2e-173 612.5 542 57.6
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.6e-172 610.1 544 57.5
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 2.1e-172 609.8 542 56.6
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 8.0e-172 607.8 542 56.5
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 4.0e-171 605.5 551 55.7
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 1.2e-170 604.0 542 56.1
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 1.8e-168 596.7 764 44.1
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 5.4e-168 595.1 542 56.5
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 4.5e-167 592.0 540 56.7
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 5.9e-167 591.7 586 53.9
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 3.8e-166 589.0 543 55.1
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 2.5e-165 586.3 543 56.5
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 9.5e-165 584.3 550 55.8
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.2e-164 583.9 544 55.5
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 2.8e-164 582.8 492 59.3
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 7.5e-162 574.7 541 55.1
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 1.7e-161 573.5 544 55.9
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 2.2e-161 573.2 488 60.5
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 3.7e-161 572.4 544 55.0
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 9.2e-160 567.8 542 54.1
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 1.7e-158 563.5 541 54.2
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 5.0e-158 562.0 544 55.0
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 2.1e-156 556.6 542 53.7
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 1.9e-152 543.5 541 53.0
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 7.0e-152 541.6 301 85.7
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 6.6e-150 535.0 476 60.7
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 2.1e-148 530.0 543 52.7
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 3.6e-148 529.3 533 53.7
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 8.1e-148 528.1 484 55.8
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 8.3e-145 518.1 488 55.5
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 7.1e-144 515.0 542 51.3
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 6.0e-143 511.9 531 50.5
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 1.0e-142 511.1 509 53.2
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 4.7e-140 502.3 475 55.6
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 1.5e-138 497.3 547 49.2
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 2.6e-138 496.5 551 49.7
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 7.6e-138 495.0 369 65.9
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 8.1e-124 448.4 445 52.4
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 3.5e-119 433.0 542 45.6
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 2.8e-116 423.3 550 43.1
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 1.1e-112 411.4 541 41.6
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 2.6e-106 390.2 545 41.7
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 4.6e-103 379.4 355 54.1
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 5.1e-102 375.9 269 67.3
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 2.2e-100 370.5 258 68.6
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 7.2e-88 328.9 282 61.3
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 2.2e-84 317.4 544 34.7
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 1.1e-83 315.1 506 39.5
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 3.4e-82 310.1 268 59.0
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 3.6e-79 300.1 211 68.2
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 4.8e-76 289.7 277 52.7
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.4e-75 288.1 258 59.3
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.9e-72 277.7 314 49.0
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 2.7e-71 273.9 190 67.9
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 4.7e-71 273.1 443 39.7
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.0e-62 245.4 267 52.1
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 1.8e-59 234.6 268 47.4
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.9e-48 198.0 201 52.7
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 6.0e-42 176.4 437 31.1
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 7.3e-40 169.5 131 66.4
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 1.5e-37 161.8 292 35.6
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.7e-33 148.3 127 57.5
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.7e-25 121.7 112 57.1
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 5.8e-21 106.7 484 25.2
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 5.6e-16 90.1 331 23.3
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 1.1e-14 85.9 93 48.4
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 9.9e-13 79.3 348 21.8
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 3.8e-12 77.4 324 25.6
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 1.1e-11 75.9 85 50.6
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 1.1e-11 75.9 85 50.6
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 1.1e-11 75.9 85 50.6
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 1.3e-09 68.9 389 21.6
Lsat_1_v5_gn_0_9700 Lactuca sativa HOM05D008167 ORTHO05D010296 5.1e-09 67.0 408 22.5
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 4.3e-08 63.9 342 20.5
Thecc.08G110600 Theobroma cacao HOM05D008167 ORTHO05D010296 7.3e-08 63.2 344 22.1
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 9.6e-08 62.8 111 38.7
Nn1g05299 Nelumbo nucifera HOM05D008167 ORTHO05D010296 9.6e-08 62.8 379 21.4
Dinv13035 Davidia involucrata HOM05D008167 ORTHO05D010296 2.1e-07 61.6 371 19.4
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 2.1e-07 61.6 83 42.2
HanXRQChr04g0111501 Helianthus annuus HOM05D008167 ORTHO05D010296 2.8e-07 61.2 368 21.7
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 2.8e-07 61.2 406 20.7
Ciclev10001481m.g Citrus clementina HOM05D008167 ORTHO05D010296 6.2e-07 60.1 323 20.4
Lalb_Chr01g0013571 Lupinus albus HOM05D008167 ORTHO05D010296 2.4e-06 58.2 338 24.0
COL.COLO4_16444 Corchorus olitorius HOM05D008167 ORTHO05D010296 4.0e-06 57.4 342 20.8
DCAR_008714 Daucus carota HOM05D008167 ORTHO05D010296 5.3e-06 57.0 279 19.7
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 6.9e-06 56.6 38 63.2
Lj4C719T5 Lonicera japonica HOM05D008167 ORTHO05D010296 6.9e-06 56.6 412 21.8
Actinidia10306 Actinidia chinensis HOM05D008167 ORTHO05D010296 9.0e-06 56.2 414 21.7
Lj4C716T9 Lonicera japonica HOM05D008167 ORTHO05D010296 9.0e-06 56.2 406 21.9


User provided reference genes

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