Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G013300 Glycine max HOM05D004906 ORTHO05D005926 1.0e-207 726.5 357 100.0
Glyma.07G045400 Glycine max HOM05D004906 ORTHO05D005926 5.4e-185 651.0 362 89.2
Phvul.010G072800 Phaseolus vulgaris HOM05D004906 ORTHO05D005926 2.3e-167 592.4 363 80.4
Medtr8g023050 Medicago truncatula HOM05D004906 ORTHO05D005926 5.1e-167 591.3 363 79.6
Lj3g0015121 Lotus japonicus HOM05D004906 ORTHO05D005926 8.1e-165 583.9 363 79.9
TPR.G18167 Trifolium pratense HOM05D004906 ORTHO05D005926 1.3e-162 576.6 363 78.2
VMungo0540G0727 Vigna mungo HOM05D004906 ORTHO05D005926 4.6e-160 568.2 357 78.4
Psat4g165720 Pisum sativum HOM05D004906 ORTHO05D005926 3.9e-159 565.1 363 75.8
Ca_23430_v3 Cicer arietinum L. HOM05D004906 ORTHO05D005926 6.6e-159 564.3 363 75.5
Lalb_Chr17g0343281 Lupinus albus HOM05D004906 ORTHO05D005926 8.7e-159 563.9 363 75.8
arahy.Tifrunner.gnm1.ann1.4M7FUH Arachis hypogaea HOM05D004906 ORTHO05D005926 6.2e-149 531.2 359 71.3
arahy.Tifrunner.gnm1.ann1.U80ME1 Arachis hypogaea HOM05D004906 ORTHO05D005926 2.4e-148 529.3 359 71.0
Cfa009918 Carpinus fangiana HOM05D004906 ORTHO05D005926 8.5e-122 441.0 359 59.3
QL01p016300 Quercus lobata HOM05D004906 ORTHO05D005926 3.2e-121 439.1 364 60.7
Cpa.g.sc34.192 Carica papaya HOM05D004906 ORTHO05D005926 3.0e-119 432.6 360 58.3
TWI31G0720 Tripterygium wilfordii HOM05D004906 ORTHO05D005926 3.9e-119 432.2 358 56.7
TAR623G1747 Trochodendron aralioides HOM05D004906 ORTHO05D005926 2.6e-118 429.5 366 58.5
arahy.Tifrunner.gnm1.ann1.7BKA07 Arachis hypogaea HOM05D004906 ORTHO05D005926 7.4e-118 427.9 286 69.9
Manes.14G139200 Manihot esculenta HOM05D004906 ORTHO05D005926 3.1e-116 422.5 361 56.8
Dinv29317 Davidia involucrata HOM05D004906 ORTHO05D005926 6.9e-116 421.4 366 58.5
Prupe.1G051200 Prunus persica HOM05D004906 ORTHO05D005926 4.5e-115 418.7 361 56.5
TWI79G0625 Tripterygium wilfordii HOM05D004906 ORTHO05D005926 5.5e-113 411.8 361 55.4
GSVIVG01000077001 Vitis vinifera HOM05D004906 ORTHO05D005926 7.2e-113 411.4 369 57.5
Atru.chr12.1308 Acer truncatum HOM05D004906 ORTHO05D005926 1.0e-111 407.5 363 55.9
CSS0023910 Camellia sinensis var. sinensis HOM05D004906 ORTHO05D005926 8.8e-111 404.4 366 56.0
MD13G1224500 Malus domestica HOM05D004906 ORTHO05D005926 1.3e-109 400.6 360 55.8
Sabra16G0167700 Salix brachista HOM05D004906 ORTHO05D005926 3.7e-109 399.1 362 56.4
Thecc.09G253700 Theobroma cacao HOM05D004906 ORTHO05D005926 6.3e-109 398.3 361 55.4
MBI13_g07374_MAGBIO Magnolia biondii HOM05D004906 ORTHO05D005926 8.2e-109 397.9 363 52.9
Potri.009G066900 Populus trichocarpa HOM05D004906 ORTHO05D005926 8.2e-109 397.9 361 56.2
Rhsim13G0204200 Rhododendron simsii HOM05D004906 ORTHO05D005926 1.4e-108 397.1 366 54.1
Actinidia06985 Actinidia chinensis HOM05D004906 ORTHO05D005926 2.4e-108 396.4 361 56.0
MD10G1340300 Malus domestica HOM05D004906 ORTHO05D005926 2.4e-108 396.4 357 55.7
Hma1.2p1_0811F.1_g222140 Hydrangea macrophylla HOM05D004906 ORTHO05D005926 3.1e-108 396.0 361 53.5
COL.COLO4_06626 Corchorus olitorius HOM05D004906 ORTHO05D005926 5.3e-108 395.2 361 55.1
PGSC0003DMG400032507 Solanum tuberosum HOM05D004906 ORTHO05D005926 7.0e-108 394.8 367 54.5
RcHm_v2.0_Chr7g0223431 Rosa chinensis HOM05D004906 ORTHO05D005926 9.1e-108 394.4 361 53.7
Potri.001G272400 Populus trichocarpa HOM05D004906 ORTHO05D005926 2.0e-107 393.3 361 55.1
CiPaw.13G147500 Carya illinoinensis HOM05D004906 ORTHO05D005926 4.5e-107 392.1 362 55.5
RcHm_v2.0_Chr1g0336841 Rosa chinensis HOM05D004906 ORTHO05D005926 2.2e-106 389.8 362 52.2
Solyc11g062360.2 Solanum lycopersicum HOM05D004906 ORTHO05D005926 2.2e-106 389.8 367 54.2
Sabra09G0049800 Salix brachista HOM05D004906 ORTHO05D005926 6.5e-106 388.3 367 54.5
Lj4A832T45 Lonicera japonica HOM05D004906 ORTHO05D005926 1.1e-105 387.5 374 52.9
Sed0008510 Sechium edule HOM05D004906 ORTHO05D005926 1.9e-105 386.7 361 52.9
Aqoxy1G00419 Aquilegia oxysepala HOM05D004906 ORTHO05D005926 2.5e-105 386.3 367 54.0
Peaxi162Scf00029g02411 Petunia axillaris HOM05D004906 ORTHO05D005926 3.2e-105 386.0 365 52.6
Ciclev10014615m.g Citrus clementina HOM05D004906 ORTHO05D005926 4.2e-105 385.6 363 52.1
Lj6A106G22 Lonicera japonica HOM05D004906 ORTHO05D005926 5.5e-105 385.2 375 52.3
Sopen11g024360 Solanum pennellii HOM05D004906 ORTHO05D005926 1.6e-104 383.6 367 53.4
MELO3C014538.2 Cucumis melo HOM05D004906 ORTHO05D005926 2.1e-104 383.3 361 52.9
Nn5g28862 Nelumbo nucifera HOM05D004906 ORTHO05D005926 2.7e-104 382.9 351 54.7
FvH4_7g06910 Fragaria vesca HOM05D004906 ORTHO05D005926 3.6e-104 382.5 361 51.2
CsaV3_6G038760 Cucumis sativus L. HOM05D004906 ORTHO05D005926 4.7e-104 382.1 361 52.9
ClCG02G022640 Citrullus lanatus HOM05D004906 ORTHO05D005926 1.0e-103 380.9 362 52.5
FAN06G2810 Fragaria x ananassa HOM05D004906 ORTHO05D005926 1.4e-103 380.6 361 51.2
Gorai.009G076700 Gossypium raimondii HOM05D004906 ORTHO05D005926 4.0e-103 379.0 360 52.8
Eucgr.J00670 Eucalyptus grandis HOM05D004906 ORTHO05D005926 5.2e-103 378.6 365 50.4
Nitab4.5_0002026g0120 Nicotiana tabacum HOM05D004906 ORTHO05D005926 6.7e-103 378.3 366 51.1
MD13G1224600 Malus domestica HOM05D004906 ORTHO05D005926 8.8e-103 377.9 360 53.6
Nitab4.5_0000492g0170 Nicotiana tabacum HOM05D004906 ORTHO05D005926 4.4e-102 375.6 365 50.7
Haze_23276 Corylus avellana HOM05D004906 ORTHO05D005926 1.3e-101 374.0 362 51.9
FvH4_5g29830 Fragaria vesca HOM05D004906 ORTHO05D005926 2.2e-101 373.2 363 51.2
PGR102G2398 Punica granatum HOM05D004906 ORTHO05D005926 1.1e-100 370.9 367 51.2
FAN18G3162 Fragaria x ananassa HOM05D004906 ORTHO05D005926 1.4e-100 370.5 363 50.7
CANSAT54G2831 Cannabis sativa HOM05D004906 ORTHO05D005926 1.8e-100 370.2 361 51.2
FAN08G1833 Fragaria x ananassa HOM05D004906 ORTHO05D005926 2.4e-100 369.8 363 51.0
FAN13G0138 Fragaria x ananassa HOM05D004906 ORTHO05D005926 5.3e-100 368.6 363 49.9
Oeu025917.1 Olea europaea HOM05D004906 ORTHO05D005926 3.8e-98 362.5 365 50.7
THA.LOC104811206 Tarenaya hassleriana HOM05D004906 ORTHO05D005926 5.0e-98 362.1 359 50.4
Sc09g0001150 Simmondsia chinensis HOM05D004906 ORTHO05D005926 5.5e-97 358.6 363 51.5
Hund07413 Selenicereus undatus HOM05D004906 ORTHO05D005926 1.0e-95 354.4 362 49.7
EL10Ac4g10081 Beta vulgaris HOM05D004906 ORTHO05D005926 1.4e-95 354.0 373 47.7
DCAR_031616 Daucus carota HOM05D004906 ORTHO05D005926 3.0e-95 352.8 360 48.6
MSTRG.12434 Avicennia marina HOM05D004906 ORTHO05D005926 1.5e-94 350.5 368 48.6
Aa31LG3G14960 Aethionema arabicum HOM05D004906 ORTHO05D005926 4.4e-94 349.0 361 47.9
Gohir.A05G072500 Gossypium hirsutum HOM05D004906 ORTHO05D005926 5.7e-94 348.6 360 50.0
PSO566G0107 Papaver somniferum HOM05D004906 ORTHO05D005926 3.7e-93 345.9 366 49.7
AL6G23070 Arabidopsis lyrata HOM05D004906 ORTHO05D005926 6.3e-93 345.1 360 48.1
A10p25530 Brassica napus HOM05D004906 ORTHO05D005926 6.3e-93 345.1 359 48.5
BolC9t59294H Brassica oleracea HOM05D004906 ORTHO05D005926 8.3e-93 344.7 359 49.0
AUR62006570 Chenopodium quinoa HOM05D004906 ORTHO05D005926 8.3e-93 344.7 369 48.5
ECA240G2886 Erigeron canadensis HOM05D004906 ORTHO05D005926 8.3e-93 344.7 363 47.9
BcaNung06216 Brassica carinata HOM05D004906 ORTHO05D005926 1.4e-92 344.0 360 49.2
Cc01_g06610 Coffea canephora HOM05D004906 ORTHO05D005926 1.4e-92 344.0 365 47.9
PSO782G1935 Papaver somniferum HOM05D004906 ORTHO05D005926 1.4e-92 344.0 366 49.5
AUR62000224 Chenopodium quinoa HOM05D004906 ORTHO05D005926 1.8e-92 343.6 366 47.8
Gohir.D05G075300 Gossypium hirsutum HOM05D004906 ORTHO05D005926 2.4e-92 343.2 360 49.4
C09p64610 Brassica napus HOM05D004906 ORTHO05D005926 3.1e-92 342.8 359 48.5
CARHR200840 Cardamine hirsuta HOM05D004906 ORTHO05D005926 7.0e-92 341.7 359 48.5
BraA10t44617Z Brassica rapa HOM05D004906 ORTHO05D005926 9.1e-92 341.3 359 48.2
AT5G12260 Arabidopsis thaliana HOM05D004906 ORTHO05D005926 2.0e-91 340.1 360 48.1
Ah.06g194850 Amaranthus hybridus HOM05D004906 ORTHO05D005926 2.2e-90 336.7 366 46.2
SalBow6G0163 Salvia bowleyana HOM05D004906 ORTHO05D005926 3.8e-90 335.9 360 47.5
Sp6g31380 Schrenkiella parvula HOM05D004906 ORTHO05D005926 3.8e-90 335.9 359 46.0
HanXRQChr03g0091561 Helianthus annuus HOM05D004906 ORTHO05D005926 3.2e-89 332.8 364 47.0
CDE08G1453 Ceratophyllum demersum HOM05D004906 ORTHO05D005926 5.5e-89 332.0 360 46.9
SGA_v2.0_scaffold3G01435 Striga asiatica HOM05D004906 ORTHO05D005926 5.5e-89 332.0 365 46.0
Thhalv10012969m.g Eutrema salsugineum HOM05D004906 ORTHO05D005926 9.5e-89 331.3 358 46.6
ECA240G3817 Erigeron canadensis HOM05D004906 ORTHO05D005926 8.0e-88 328.2 363 46.6
Os01g0283000 Oryza sativa ssp. japonica HOM05D004906 ORTHO05D005926 8.0e-88 328.2 361 46.8
Sp6g31370 Schrenkiella parvula HOM05D004906 ORTHO05D005926 1.4e-87 327.4 361 44.9
BraA03t09888Z Brassica rapa HOM05D004906 ORTHO05D005926 1.5e-86 323.9 358 45.3
A03p05500 Brassica napus HOM05D004906 ORTHO05D005926 2.0e-86 323.6 358 45.5
Lsat_1_v5_gn_3_117120 Lactuca sativa HOM05D004906 ORTHO05D005926 5.7e-86 322.0 362 47.5
ATR0745G074 Amborella trichopoda HOM05D004906 ORTHO05D005926 9.8e-86 321.2 365 45.2
Zm00001eb129370 Zea mays HOM05D004906 ORTHO05D005926 1.7e-85 320.5 362 46.1
unitig_699.g19150 Utricularia gibba HOM05D004906 ORTHO05D005926 2.2e-85 320.1 357 45.1
HPP92_025126 Vanilla planifolia HOM05D004906 ORTHO05D005926 1.4e-84 317.4 362 43.4
Thhalv10028084m.g Eutrema salsugineum HOM05D004906 ORTHO05D005926 1.3e-82 310.8 359 44.3
SHI24959 Sapria himalayana HOM05D004906 ORTHO05D005926 1.8e-79 300.4 364 43.7
FAN10G0972 Fragaria x ananassa HOM05D004906 ORTHO05D005926 4.0e-79 299.3 253 57.3
Migut.N02384 Erythranthe guttata HOM05D004906 ORTHO05D005926 5.2e-79 298.9 327 47.4
SGA_v2.0_scaffold26G11394 Striga asiatica HOM05D004906 ORTHO05D005926 5.0e-74 282.3 355 39.7
BcaB01g05413 Brassica carinata HOM05D004906 ORTHO05D005926 2.8e-72 276.6 357 40.9
Duzib150G1150 Durio zibethinus HOM05D004906 ORTHO05D005926 3.6e-72 276.2 361 43.2
FAN03G0457 Fragaria x ananassa HOM05D004906 ORTHO05D005926 1.0e-71 274.6 349 43.0
SEGI_13581 Sequoiadendron giganteum HOM05D004906 ORTHO05D005926 3.1e-71 273.1 378 40.5
ATR0307G068 Amborella trichopoda HOM05D004906 ORTHO05D005926 1.3e-66 257.7 256 49.2
Ciclev10017537m.g Citrus clementina HOM05D004906 ORTHO05D005926 3.1e-63 246.5 322 43.8
BolC3t13148H Brassica oleracea HOM05D004906 ORTHO05D005926 7.5e-62 241.9 313 40.6
Lj6C105G1 Lonicera japonica HOM05D004906 ORTHO05D005926 1.6e-59 234.2 374 38.8
C03p06420 Brassica napus HOM05D004906 ORTHO05D005926 6.0e-59 232.3 358 37.7
Actinidia24474 Actinidia chinensis HOM05D004906 ORTHO05D005926 3.4e-54 216.5 310 42.9
FAN01G0016 Fragaria x ananassa HOM05D004906 ORTHO05D005926 7.6e-46 188.7 312 34.6
SMO358G0189 Selaginella moellendorffii HOM05D004906 ORTHO05D005926 2.2e-45 187.2 170 49.4
Potri.012G121826 Populus trichocarpa HOM05D004906 ORTHO05D005926 3.8e-45 186.4 191 50.3
Pp3c3_19100 Physcomitrium patens HOM05D004906 ORTHO05D005926 2.4e-44 183.7 371 32.6
BcaNung06730 Brassica carinata HOM05D004906 ORTHO05D005926 1.6e-43 181.0 116 69.8
Mapoly0001s0235 Marchantia polymorpha HOM05D004906 ORTHO05D005926 6.6e-42 175.6 362 29.6
Carub.0006s1078 Capsella rubella HOM05D004906 ORTHO05D005926 1.4e-39 167.9 228 39.0
CiPaw.14G109800 Carya illinoinensis HOM05D004906 ORTHO05D005926 7.9e-35 152.1 82 84.1
Carub.0006s1077 Capsella rubella HOM05D004906 ORTHO05D005926 1.1e-28 131.7 82 72.0
Oeu061691.1 Olea europaea HOM05D004906 ORTHO05D005926 5.9e-14 82.8 73 54.8
CBR_g22918 Chara braunii HOM05D004906 ORTHO05D005926 3.3e-09 67.0 93 33.3


User provided reference genes

Program Settings