Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 5.5e-167 590.9 298 100.0
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 5.7e-156 554.3 298 94.0
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.8e-133 479.6 299 82.9
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.5e-132 476.5 269 92.9
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 5.8e-132 474.6 298 80.5
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 1.4e-130 469.9 298 79.9
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 3.2e-130 468.8 298 79.9
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 3.2e-130 468.8 269 90.7
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 3.5e-129 465.3 299 80.9
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 2.8e-126 455.7 299 78.6
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 3.3e-119 432.2 301 75.7
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 3.9e-104 382.1 302 67.9
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 4.3e-103 378.6 299 66.6
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 4.8e-102 375.2 301 67.4
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 1.1e-101 374.0 301 66.8
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 3.1e-101 372.5 300 66.7
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 4.0e-101 372.1 335 61.8
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 9.0e-101 370.9 307 66.1
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 1.3e-99 367.1 303 64.7
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 6.4e-99 364.8 331 62.5
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 1.4e-98 363.6 270 70.0
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 1.2e-97 360.5 303 65.3
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 2.1e-97 359.8 305 66.6
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.1e-97 359.8 303 65.0
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 6.0e-97 358.2 327 61.5
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 1.8e-96 356.7 330 62.4
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.1e-95 354.0 302 63.6
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.1e-95 354.0 302 63.6
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 2.1e-94 349.7 328 61.3
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 2.1e-94 349.7 225 80.4
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.8e-94 349.4 225 80.4
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.7e-94 349.0 225 80.0
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.8e-94 348.6 225 80.0
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.8e-94 348.6 320 59.1
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 6.2e-94 348.2 320 59.1
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 8.1e-94 347.8 332 59.3
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 1.1e-93 347.4 310 61.6
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.4e-93 346.3 327 59.9
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 3.1e-93 345.9 264 69.7
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 4.0e-93 345.5 225 79.1
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 6.9e-93 344.7 225 79.6
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 1.5e-92 343.6 212 84.0
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 2.0e-92 343.2 225 77.8
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 5.8e-92 341.7 334 58.1
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 3.8e-91 339.0 225 78.2
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.8e-91 339.0 236 74.2
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 8.4e-91 337.8 225 76.9
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 8.4e-91 337.8 305 61.6
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 8.4e-91 337.8 229 76.0
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 8.4e-91 337.8 225 77.3
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 1.1e-90 337.4 227 77.5
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 4.2e-90 335.5 225 76.9
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 4.2e-90 335.5 276 65.9
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 9.3e-90 334.3 231 75.8
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 9.3e-90 334.3 231 73.6
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.2e-89 334.0 264 65.5
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 2.7e-89 332.8 220 78.6
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 2.7e-89 332.8 225 75.6
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 4.6e-89 332.0 225 75.1
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 4.6e-89 332.0 236 72.0
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.0e-89 331.6 240 71.2
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.0e-88 330.9 222 76.1
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.3e-88 330.5 226 76.5
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 1.8e-88 330.1 232 73.7
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.8e-88 330.1 223 76.7
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 2.3e-88 329.7 316 60.1
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 2.3e-88 329.7 222 75.7
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.3e-88 329.7 220 75.5
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 6.7e-88 328.2 226 75.2
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 6.7e-88 328.2 222 74.8
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.7e-88 328.2 240 70.8
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 1.1e-87 327.4 211 78.7
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 1.9e-87 326.6 232 73.3
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 2.5e-87 326.2 222 75.7
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 3.3e-87 325.9 228 74.6
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 3.3e-87 325.9 226 76.1
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 3.3e-87 325.9 225 72.0
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 3.3e-87 325.9 229 72.9
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 7.4e-87 324.7 226 76.1
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 9.6e-87 324.3 225 73.3
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 9.6e-87 324.3 232 72.8
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 3.7e-86 322.4 231 72.3
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 4.8e-86 322.0 231 71.4
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 6.3e-86 321.6 239 69.0
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 6.3e-86 321.6 229 72.1
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 8.2e-86 321.2 225 74.2
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 8.2e-86 321.2 228 74.1
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 8.2e-86 321.2 228 74.1
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 8.2e-86 321.2 235 71.5
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 8.2e-86 321.2 231 71.0
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.1e-85 320.9 222 74.3
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.1e-85 320.9 225 75.1
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 1.4e-85 320.5 226 73.0
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 1.4e-85 320.5 226 73.0
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 1.4e-85 320.5 235 71.1
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 2.4e-85 319.7 231 71.0
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 3.1e-85 319.3 226 73.5
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 4.1e-85 318.9 226 73.5
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 4.1e-85 318.9 226 73.5
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 4.1e-85 318.9 233 71.7
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 9.0e-85 317.8 226 73.0
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 1.2e-84 317.4 217 76.5
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.2e-84 317.4 220 76.4
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.5e-84 317.0 226 73.0
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 3.4e-84 315.8 227 72.7
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 4.5e-84 315.5 223 75.3
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 7.6e-84 314.7 222 70.7
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 7.6e-84 314.7 222 71.2
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.0e-83 314.3 232 70.3
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 3.8e-83 312.4 218 74.8
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 5.0e-83 312.0 229 70.3
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.4e-82 310.5 178 89.3
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 2.5e-82 309.7 233 67.4
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 5.5e-82 308.5 221 70.1
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 4.6e-81 305.4 294 58.2
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 2.3e-80 303.1 218 72.0
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 3.9e-80 302.4 241 65.1
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 5.1e-80 302.0 221 70.6
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.5e-79 299.7 213 72.3
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 3.3e-79 299.3 223 72.2
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.3e-78 297.4 223 70.9
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 3.7e-78 295.8 216 69.0
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 2.9e-75 286.2 226 66.4
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 3.2e-74 282.7 177 81.9
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.3e-67 260.8 170 77.1
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.9e-67 259.6 255 56.5
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.2e-66 256.1 191 72.3
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 1.4e-64 250.8 182 72.0
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.0e-64 249.6 167 74.9
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 8.8e-64 248.1 205 67.8
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 7.4e-63 245.0 341 45.2
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.7e-62 242.7 225 56.9
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 3.7e-62 242.7 225 56.9
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 3.1e-61 239.6 158 77.8
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 9.1e-61 238.0 240 57.9
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.6e-60 236.5 222 58.6
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 4.5e-60 235.7 219 58.0
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.9e-59 233.0 231 58.4
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.9e-59 233.0 174 73.0
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 6.5e-59 231.9 191 68.6
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.9e-58 230.3 189 63.0
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 3.1e-53 213.0 227 51.1
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.0e-51 208.0 185 59.5
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 5.5e-50 202.2 185 56.2
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.6e-49 200.7 157 68.8
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.3e-46 191.0 235 48.1
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 2.1e-41 173.7 165 57.0
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 6.8e-32 142.1 342 34.2
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 3.5e-28 129.8 241 35.7
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.5e-23 114.4 68 79.4
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 1.9e-21 107.5 213 33.8
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 8.6e-19 98.6 209 32.5
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.4e-16 91.3 236 30.1
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 7.1e-13 79.0 244 28.3
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 7.8e-12 75.5 59 59.3
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.1e-10 71.6 55 70.9
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 4.3e-10 69.7 81 51.9
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 3.6e-09 66.6 202 30.2
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.1e-08 65.1 41 75.6
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 1.8e-08 64.3 42 64.3
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 2.9e-06 57.0 72 41.7
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 2.9e-06 57.0 72 41.7
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 2.9e-06 57.0 72 41.7
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.8e-06 56.6 162 31.5
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 6.4e-06 55.8 58 46.6
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 6.4e-06 55.8 58 46.6


User provided reference genes

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