Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 2197.9 1091 100.0
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 2117.8 1091 96.0
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 2050.8 1091 92.6
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 2037.3 1089 92.1
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1974.1 1091 89.4
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1971.1 1091 88.8
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1952.6 1093 88.4
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1946.8 1087 88.1
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1940.2 1091 87.4
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1904.0 1089 86.1
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1845.5 1084 83.3
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1845.5 1084 83.3
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1734.2 1082 77.5
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1729.9 1082 77.4
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1727.6 1083 77.8
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1717.6 1083 77.7
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1715.3 1082 77.3
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1714.5 1083 77.4
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1706.8 1086 76.2
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1699.1 1087 75.7
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1697.9 1084 76.6
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1691.4 1083 76.4
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1691.0 1083 75.5
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1690.6 1085 75.9
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1685.6 1086 75.4
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1683.3 1088 76.2
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1682.2 1085 75.3
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1682.2 1088 75.9
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1674.8 1085 75.3
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1672.5 1083 75.8
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1671.4 1164 71.5
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1667.9 1089 76.2
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1666.7 1084 75.5
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1664.4 1085 76.0
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1662.5 1164 71.1
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1662.1 1085 75.9
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1660.6 1086 75.0
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1659.0 1086 74.8
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1659.0 1085 74.4
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1657.5 1072 75.4
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1656.7 1085 75.4
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1655.6 1085 74.4
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1651.3 1085 74.1
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1651.3 1085 73.8
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1651.0 1088 74.2
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1648.3 1085 75.0
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1643.6 1085 74.2
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1643.2 1085 75.0
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1640.2 1085 73.9
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1634.4 1092 72.9
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1634.4 1111 71.7
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1633.6 1082 73.1
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1632.8 1094 74.0
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1625.9 1092 72.1
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1611.3 1088 73.3
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1590.9 1084 71.1
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1584.3 1081 71.1
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1583.5 1084 71.0
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1582.4 1087 71.5
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1574.7 1087 71.4
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1572.4 1091 70.4
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1083 70.8
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1110 69.6
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1570.4 1096 70.3
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1085 72.5
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1567.4 1019 75.2
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1567.0 1092 70.7
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1565.8 1083 70.7
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1563.5 1083 70.1
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1563.5 1083 70.2
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1563.1 1083 70.4
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1560.0 1090 70.4
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1559.7 1083 70.5
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1559.3 1081 70.8
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1558.9 1089 70.3
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1558.5 1097 68.8
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1557.3 1087 69.9
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1556.2 1092 70.2
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1555.8 1083 69.7
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1555.0 1083 70.1
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1552.7 1064 71.0
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1552.0 1087 70.1
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1551.2 1086 69.1
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1550.8 1087 70.4
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1548.9 1084 70.0
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1548.5 1087 70.1
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1548.1 1087 70.1
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1547.3 1087 70.1
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1547.3 1087 70.1
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1546.9 1087 70.0
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1545.4 1086 69.4
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1544.3 1087 69.7
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1536.5 1082 70.5
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1534.2 1115 67.9
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1533.1 1082 68.8
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1530.8 995 75.8
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1527.3 1090 69.2
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1526.5 1084 68.8
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1522.3 1103 68.9
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1517.3 1002 73.8
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1514.2 1152 65.0
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1509.2 1104 67.2
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1501.5 1058 69.8
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1498.8 1082 67.4
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1460.7 981 72.6
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1459.5 1114 65.4
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1434.9 1086 64.8
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1428.3 1010 71.4
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1422.9 1083 65.6
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1403.7 1108 62.6
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1346.3 1086 64.3
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1287.7 792 80.2
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1177.2 1090 54.2
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1176.0 1091 54.6
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1159.4 691 81.5
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1155.6 1133 52.6
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1149.8 1090 53.4
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1134.4 714 77.6
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1132.5 1090 52.0
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1128.6 673 79.9
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1078.9 757 70.7
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 2.0e-291 1006.1 844 60.0
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.7e-280 969.1 817 61.3
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 1.2e-270 937.2 613 76.5
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 1.7e-250 870.2 962 48.5
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 3.9e-242 842.4 629 67.7
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.6e-235 820.5 635 64.9
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 8.9e-231 804.7 499 77.0
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 9.0e-215 751.5 979 45.1
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 4.3e-177 626.3 616 53.7
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 7.2e-164 582.4 430 69.1
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 2.9e-149 533.9 303 82.8
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.0e-130 472.2 312 74.0
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 7.5e-129 466.1 388 62.6
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 2.9e-80 304.7 299 53.8
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 3.3e-76 291.2 240 60.4
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 3.4e-73 281.2 136 94.9
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 7.7e-65 253.4 205 62.4
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 5.3e-50 204.1 138 65.2
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 4.8e-35 154.5 221 43.9
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 5.4e-34 151.0 141 58.2
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 8.0e-30 137.1 156 46.8
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 6.8e-29 134.0 105 61.0
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 8.8e-29 133.7 72 86.1
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 8.3e-27 127.1 123 56.9
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.6e-25 122.9 97 62.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 5.2e-21 107.8 88 60.2
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.0e-13 83.6 45 88.9
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 5.2e-13 81.3 49 71.4
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 1.2e-12 80.1 70 50.0
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 7.0e-10 70.9 55 69.1
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 5.6e-07 61.2 39 69.2


User provided reference genes

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