Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G274900 Glycine max HOM05D008016 ORTHO05D004271 1.8e-37 158.7 77 100.0
Gohir.A09G101825 Gossypium hirsutum HOM05D008016 ORTHO05D004271 4.2e-26 120.9 71 80.3
Lalb_Chr03g0039361 Lupinus albus HOM05D008016 ORTHO05D004271 9.3e-26 119.8 75 80.0
Gohir.A09G103364 Gossypium hirsutum HOM05D008016 ORTHO05D004271 7.9e-25 116.7 75 77.3
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 7.9e-25 116.7 75 77.3
Gohir.A13G086605 Gossypium hirsutum HOM05D008016 ORTHO05D004271 3.0e-24 114.8 71 78.9
Gohir.A07G174766 Gossypium hirsutum HOM05D008016 ORTHO05D004271 5.7e-23 110.5 75 73.3
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 1.1e-21 106.3 75 74.7
Migut.A01208 Erythranthe guttata HOM05D008016 ORTHO05D004271 1.4e-21 105.9 72 73.6
arahy.Tifrunner.gnm1.ann1.LBLK2X Arachis hypogaea HOM05D008037 ORTHO05D004271 1.1e-15 86.3 75 61.3
Lsat_1_v5_gn_2_98441 Lactuca sativa HOM05D008016 ORTHO05D004271 3.3e-15 84.7 72 59.7
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 4.3e-15 84.3 82 54.9
arahy.Tifrunner.gnm1.ann1.KSIE27 Arachis hypogaea HOM05D008037 ORTHO05D004271 3.7e-14 81.3 81 53.1
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 1.1e-13 79.7 90 51.1
arahy.Tifrunner.gnm1.ann1.61DFKT Arachis hypogaea HOM05D008037 ORTHO05D004271 1.8e-13 79.0 54 75.9
Nitab4.5_0004841g0080 Nicotiana tabacum HOM05D008037 ORTHO05D004271 5.3e-13 77.4 77 55.8
Lalb_Chr15g0080721 Lupinus albus HOM05D008016 ORTHO05D004271 4.5e-12 74.3 44 81.8
C04p22520 Brassica napus HOM05D008016 ORTHO05D004271 5.9e-12 73.9 57 70.2
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 5.9e-12 73.9 57 70.2
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 5.9e-12 73.9 57 70.2
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 7.7e-12 73.6 63 61.9
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 7.7e-12 73.6 63 61.9
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 7.7e-12 73.6 63 61.9
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 7.7e-12 73.6 63 61.9
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 7.7e-12 73.6 63 61.9
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 7.7e-12 73.6 63 61.9
BraSC59t46557Z Brassica rapa HOM05D008016 ORTHO05D004271 7.7e-12 73.6 63 61.9
BolSC44t60833H Brassica oleracea HOM05D008016 ORTHO05D004271 1.3e-11 72.8 56 64.3
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 2.9e-11 71.6 44 79.5
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 2.9e-11 71.6 44 79.5
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 2.9e-11 71.6 44 79.5
Gohir.1Z049482 Gossypium hirsutum HOM05D008016 ORTHO05D004271 3.8e-11 71.2 44 77.3
Nitab4.5_0005831g0110 Nicotiana tabacum HOM05D008016 ORTHO05D011667 3.8e-11 71.2 46 76.1
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 8.5e-11 70.1 63 60.3
Solyc11g044665.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 1.1e-10 69.7 73 53.4
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 1.9e-10 68.9 63 63.5
Solyc06g043035.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 4.2e-10 67.8 44 75.0
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 9.4e-10 66.6 74 51.4
RcHm_v2.0_Chr4g0392721 Rosa chinensis HOM05D008016 ORTHO05D004271 1.2e-09 66.2 83 50.6
Solyc03g150126.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 2.7e-09 65.1 88 46.6
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 1.4e-08 62.8 36 83.3
Nitab4.5_0012234g0010 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.4e-08 62.8 47 59.6
FAN22G1916 Fragaria x ananassa HOM05D008037 ORTHO05D004271 1.8e-08 62.4 46 63.0
Solyc12g099150.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 2.3e-08 62.0 49 67.3
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 3.0e-08 61.6 46 65.2
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 3.0e-08 61.6 46 65.2
FAN26G0971 Fragaria x ananassa HOM05D008037 ORTHO05D004271 3.0e-08 61.6 46 63.0
arahy.Tifrunner.gnm1.ann1.20TFSQ Arachis hypogaea HOM05D008037 ORTHO05D004271 3.9e-08 61.2 33 81.8
arahy.Tifrunner.gnm1.ann1.P2FSG5 Arachis hypogaea HOM05D008037 ORTHO05D004271 3.9e-08 61.2 33 81.8
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 3.9e-08 61.2 32 84.4
Nitab4.5_0000066g0170 Nicotiana tabacum HOM05D008037 ORTHO05D004271 5.1e-08 60.8 46 60.9
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 5.1e-08 60.8 45 71.1
Potri.008G221801 Populus trichocarpa HOM05D008037 ORTHO05D004271 5.1e-08 60.8 32 81.2
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 8.8e-08 60.1 32 81.2
arahy.Tifrunner.gnm1.ann1.KJ09M7 Arachis hypogaea HOM05D008037 ORTHO05D004271 8.8e-08 60.1 32 81.2
Nitab4.5_0001986g0120 Nicotiana tabacum HOM05D008037 ORTHO05D004271 8.8e-08 60.1 41 65.9
CDE02G0533 Ceratophyllum demersum HOM05D008037 ORTHO05D004271 1.5e-07 59.3 32 81.2
MBI08_g48225_MAGBIO Magnolia biondii HOM05D008037 ORTHO05D004271 1.5e-07 59.3 33 78.8
Solyc00g500344.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 1.5e-07 59.3 33 78.8
Solyc09g011150.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 1.5e-07 59.3 32 81.2
arahy.Tifrunner.gnm1.ann1.ASR258 Arachis hypogaea HOM05D008037 ORTHO05D004271 2.6e-07 58.5 34 79.4
CAN.G134.6 Capsicum annuum HOM05D008037 ORTHO05D004271 2.6e-07 58.5 30 83.3
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 3.3e-07 58.2 47 63.8
arahy.Tifrunner.gnm1.ann1.WFJR7S Arachis hypogaea HOM05D008037 ORTHO05D004271 4.4e-07 57.8 30 83.3
arahy.Tifrunner.gnm1.ann1.XGYT8C Arachis hypogaea HOM05D008037 ORTHO05D004271 4.4e-07 57.8 32 78.1
Nitab4.5_0001727g0130 Nicotiana tabacum HOM05D008037 ORTHO05D004271 4.4e-07 57.8 33 75.8
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 4.4e-07 57.8 32 78.1
Nitab4.5_0001170g0110 Nicotiana tabacum HOM05D008016 ORTHO05D004271 7.4e-07 57.0 44 63.6
Peaxi162Scf00210g00153 Petunia axillaris HOM05D008037 ORTHO05D004271 7.4e-07 57.0 32 78.1
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 7.4e-07 57.0 30 80.0
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 9.7e-07 56.6 38 71.1
arahy.Tifrunner.gnm1.ann1.M1FG7L Arachis hypogaea HOM05D008354 ORTHO05D010055 1.7e-06 55.8 29 82.8
Nitab4.5_0001761g0150 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.7e-06 55.8 30 76.7
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 2.2e-06 55.5 32 78.1
CiPaw.14G028800 Carya illinoinensis HOM05D008016 ORTHO05D004271 2.8e-06 55.1 54 57.4
Nitab4.5_0027992g0040 Nicotiana tabacum HOM05D008037 ORTHO05D004271 2.8e-06 55.1 32 75.0
EL10As10g23963 Beta vulgaris HOM05D008037 ORTHO05D004271 8.2e-06 53.5 33 72.7


User provided reference genes

Program Settings