Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 5.5e-74 280.8 133 100.0
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 4.5e-68 261.2 133 93.2
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.7e-67 259.2 133 91.7
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 1.4e-66 256.1 133 89.5
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 1.9e-66 255.8 133 90.2
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 5.5e-66 254.2 133 88.0
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 9.3e-66 253.4 133 88.7
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 9.3e-66 253.4 133 88.7
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 1.0e-64 250.0 129 89.1
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 1.3e-64 249.6 133 86.5
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 3.0e-64 248.4 130 86.2
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 5.1e-64 247.7 130 84.6
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 1.1e-63 246.5 133 85.0
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 4.3e-63 244.6 133 84.2
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 9.7e-63 243.4 130 83.8
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.6e-62 242.7 133 83.5
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 2.8e-62 241.9 133 82.7
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 4.8e-62 241.1 133 82.7
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 8.2e-62 240.4 133 83.5
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 1.4e-61 239.6 130 81.5
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 1.8e-61 239.2 133 82.0
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.8e-61 239.2 129 86.8
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 2.4e-61 238.8 130 82.3
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 3.1e-61 238.4 130 81.5
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 3.1e-61 238.4 130 81.5
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 3.1e-61 238.4 130 81.5
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 6.9e-61 237.3 130 80.8
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 9.0e-61 236.9 130 81.5
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 1.2e-60 236.5 129 81.4
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 1.5e-60 236.1 130 81.5
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 2.0e-60 235.7 133 81.2
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 3.4e-60 235.0 133 82.0
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 4.5e-60 234.6 129 81.4
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 4.5e-60 234.6 130 80.8
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 5.9e-60 234.2 133 78.2
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 5.9e-60 234.2 130 80.8
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 7.7e-60 233.8 129 81.4
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 7.7e-60 233.8 133 77.4
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 1.0e-59 233.4 133 78.9
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 2.2e-59 232.3 129 78.3
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 2.2e-59 232.3 133 79.7
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 2.9e-59 231.9 130 81.5
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 3.8e-59 231.5 133 78.2
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 5.0e-59 231.1 130 80.8
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 6.5e-59 230.7 130 80.0
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 6.5e-59 230.7 131 78.6
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 1.9e-58 229.2 131 77.1
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 1.9e-58 229.2 129 79.8
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 3.2e-58 228.4 129 79.1
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 3.2e-58 228.4 175 64.6
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 4.2e-58 228.0 130 77.7
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 9.4e-58 226.9 135 76.3
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 1.2e-57 226.5 133 77.4
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 1.6e-57 226.1 130 78.5
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 2.1e-57 225.7 129 79.1
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 2.7e-57 225.3 130 77.7
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 2.7e-57 225.3 133 76.7
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 3.6e-57 224.9 131 77.9
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 4.6e-57 224.6 135 76.3
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 4.6e-57 224.6 135 76.3
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 4.6e-57 224.6 129 78.3
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 6.1e-57 224.2 130 79.2
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 1.0e-56 223.4 133 73.7
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 1.4e-56 223.0 133 75.9
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 1.4e-56 223.0 135 74.8
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 3.9e-56 221.5 130 78.5
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 1.1e-55 219.9 131 75.6
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 1.5e-55 219.5 133 73.7
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 7.4e-55 217.2 137 75.2
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 7.4e-55 217.2 127 75.6
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 2.2e-54 215.7 130 74.6
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 8.2e-54 213.8 129 74.4
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 8.2e-54 213.8 132 76.5
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.8e-53 212.6 129 73.6
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 2.4e-53 212.2 131 70.2
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 2.4e-53 212.2 130 72.3
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 3.1e-53 211.8 129 76.0
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 4.1e-53 211.5 227 50.7
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 2.9e-51 205.3 131 68.7
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 1.1e-50 203.4 133 74.4
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 4.2e-50 201.4 130 69.2
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 9.4e-50 200.3 130 68.5
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 5.1e-48 194.5 131 67.2
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 6.7e-48 194.1 130 66.2
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 1.1e-47 193.4 131 65.6
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.1e-47 193.4 131 64.9
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.1e-47 193.4 131 65.6
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 1.5e-47 193.0 126 73.0
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 2.8e-46 188.7 131 63.4
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 2.8e-46 188.7 131 63.4
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 2.8e-46 188.7 131 63.4
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 6.3e-46 187.6 131 62.6
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 6.3e-46 187.6 131 62.6
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 8.2e-46 187.2 131 64.1
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 1.4e-45 186.4 131 64.1
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 1.8e-45 186.0 130 63.8
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 4.5e-44 181.4 131 61.1
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 5.9e-44 181.0 131 61.8
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 5.9e-44 181.0 131 62.6
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 6.5e-43 177.6 156 59.0
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 2.1e-41 172.6 131 62.6
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 2.7e-41 172.2 132 59.1
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 5.2e-40 167.9 129 55.8
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 8.8e-40 167.2 129 54.3
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 6.3e-38 161.0 85 85.9
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 8.2e-38 160.6 129 57.4
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 8.2e-38 160.6 135 54.1
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 1.1e-37 160.2 85 83.5
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 3.1e-37 158.7 133 56.4
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 1.7e-35 152.9 129 53.5
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 3.8e-35 151.8 130 53.8
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 7.2e-34 147.5 102 64.7
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 4.0e-32 141.7 129 49.6
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.5e-31 139.8 79 78.5
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 3.5e-28 128.6 75 77.3
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 2.1e-25 119.4 64 79.7
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 8.8e-24 114.0 124 47.6
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 2.8e-22 109.0 72 70.8
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 1.7e-19 99.8 124 41.9
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 2.8e-17 92.4 56 66.1
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 1.1e-13 80.5 48 75.0
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 4.1e-13 78.6 48 70.8
Cre07.g315100 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 4.5e-12 75.1 133 36.1
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 5.9e-12 74.7 53 62.3
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 4.3e-10 68.6 44 65.9
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 9.5e-10 67.4 47 63.8


User provided reference genes

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