Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 5.7e-256 887.1 453 100.0
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.3e-247 859.4 453 96.2
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 3.7e-231 804.7 453 89.4
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 4.8e-231 804.3 453 89.2
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 5.4e-222 774.2 453 85.0
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 5.9e-221 770.8 453 85.7
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.1e-219 766.5 453 85.7
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 2.8e-218 761.9 453 83.9
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 5.2e-217 757.7 481 82.1
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 1.5e-216 756.1 481 81.9
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 8.6e-212 740.3 454 82.2
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 4.7e-210 734.6 453 80.8
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 4.1e-190 668.3 465 72.0
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 2.1e-189 666.0 454 74.9
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 4.6e-189 664.8 447 75.2
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.6e-186 656.4 447 74.7
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.6e-186 656.4 447 75.2
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 4.7e-186 654.8 450 74.0
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.8e-185 652.9 454 74.2
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 5.2e-185 651.4 446 74.7
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 6.8e-185 651.0 447 72.7
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 4.4e-184 648.3 446 74.4
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 9.9e-184 647.1 456 72.6
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 2.2e-183 646.0 446 74.2
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 8.4e-183 644.0 446 74.4
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 3.2e-182 642.1 448 73.4
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.2e-182 642.1 431 76.1
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 1.6e-181 639.8 448 72.8
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.7e-180 636.3 455 72.5
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 5.1e-180 634.8 449 71.7
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 6.6e-180 634.4 446 72.2
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.9e-179 632.9 452 70.8
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.5e-179 632.5 449 70.4
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 5.6e-179 631.3 432 73.1
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 9.6e-179 630.6 455 71.6
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 9.6e-179 630.6 450 71.6
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 1.2e-178 630.2 450 71.3
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 3.6e-178 628.6 457 70.2
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 4.7e-178 628.2 463 69.1
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.1e-177 625.5 449 71.0
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 6.9e-177 624.4 454 70.5
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 9.0e-177 624.0 450 71.6
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.2e-176 623.6 452 68.4
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 2.0e-176 622.9 449 70.8
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 3.4e-176 622.1 459 69.7
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 5.8e-176 621.3 395 78.0
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 7.6e-176 620.9 449 71.0
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 2.2e-175 619.4 447 70.9
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 3.8e-175 618.6 448 71.0
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 6.4e-175 617.8 448 69.0
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 8.4e-175 617.5 450 68.4
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.1e-174 617.1 448 70.5
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.1e-174 617.1 447 71.1
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.1e-174 617.1 448 70.8
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 1.1e-174 617.1 447 70.5
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-174 616.7 448 70.8
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 4.2e-174 615.1 450 70.0
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 4.2e-174 615.1 448 70.8
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 4.2e-174 615.1 451 71.2
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 7.1e-174 614.4 448 70.1
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 9.3e-174 614.0 450 70.0
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 2.1e-173 612.8 450 69.8
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 2.7e-173 612.5 448 70.5
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 2.7e-173 612.5 450 69.6
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 2.7e-173 612.5 450 69.6
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 3.5e-173 612.1 456 66.7
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 3.5e-173 612.1 456 66.7
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 3.5e-173 612.1 449 70.6
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 7.8e-173 610.9 399 77.4
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.7e-172 609.8 465 67.7
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.9e-172 608.6 447 70.0
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 5.1e-172 608.2 450 69.6
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.1e-171 607.1 439 69.7
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 1.9e-171 606.3 448 70.1
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.9e-171 606.3 417 72.9
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.9e-171 606.3 439 69.5
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 3.3e-171 605.5 452 68.6
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 4.3e-171 605.1 452 68.8
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 5.6e-171 604.7 452 68.1
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 9.6e-171 604.0 450 68.7
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.6e-170 603.2 446 69.7
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.6e-170 603.2 446 69.7
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.1e-170 602.8 468 67.1
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 2.8e-170 602.4 490 64.7
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 2.8e-170 602.4 448 68.8
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.4e-169 600.1 451 69.0
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 3.1e-169 599.0 454 68.5
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 2.6e-168 595.9 475 66.1
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 7.6e-168 594.3 446 69.3
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 2.2e-167 592.8 440 66.6
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 3.2e-166 589.0 472 65.5
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 2.1e-165 586.3 454 67.4
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.5e-165 585.5 446 67.9
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 3.0e-164 582.4 551 55.7
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 8.7e-164 580.9 469 66.5
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.5e-163 580.1 440 64.3
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 3.3e-163 578.9 406 72.7
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 9.6e-163 577.4 453 66.7
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 9.0e-161 570.9 439 67.0
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.7e-159 566.6 445 66.3
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 8.4e-159 564.3 459 63.8
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 4.2e-158 562.0 465 63.4
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 1.0e-156 557.4 403 71.2
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.0e-156 557.4 441 63.9
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 3.7e-154 548.9 396 67.9
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 2.0e-152 543.1 389 69.2
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.6e-149 533.5 441 62.6
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 2.4e-145 519.6 464 58.6
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 5.9e-144 515.0 444 58.8
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.0e-143 514.2 480 57.9
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 4.3e-139 498.8 442 58.6
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 7.4e-139 498.0 412 63.3
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 1.7e-135 486.9 450 55.8
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 2.2e-135 486.5 446 55.2
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 5.0e-135 485.3 446 56.5
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 6.5e-135 485.0 394 63.7
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.5e-134 483.0 348 72.1
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 3.0e-132 476.1 448 56.5
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 1.7e-127 460.3 439 54.7
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 2.5e-126 456.4 282 78.0
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 3.0e-124 449.5 460 55.7
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 3.1e-121 439.5 454 50.9
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 5.3e-121 438.7 389 57.8
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 7.0e-121 438.3 426 53.3
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.0e-121 438.3 446 58.7
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 6.1e-117 425.2 455 49.2
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.3e-116 423.3 455 49.0
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.7e-114 417.2 449 48.3
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.2e-112 411.0 317 70.0
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.5e-102 377.5 449 46.5
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.9e-98 362.5 290 65.5
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 7.8e-96 355.1 271 66.8
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.8e-92 344.0 250 67.6
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 7.5e-91 338.6 394 48.5
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.3e-79 300.4 454 40.1
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.5e-70 270.4 310 51.6
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 4.3e-70 269.6 186 71.0
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.0e-63 248.4 452 37.8
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.7e-56 223.8 158 71.5
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 4.8e-53 213.0 173 65.9
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 6.2e-53 212.6 128 76.6
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 6.4e-50 202.6 140 72.1
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.6e-48 196.4 151 64.2
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.2e-43 181.8 121 73.6
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 7.6e-43 179.1 199 50.3
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.9e-30 137.9 132 58.3
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 4.3e-30 136.7 94 71.3
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 5.9e-27 126.3 118 57.6
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.7e-26 124.8 112 58.9
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 2.5e-22 110.9 72 69.4
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 2.8e-21 107.5 62 88.7
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 8.5e-18 95.9 99 48.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 1.9e-17 94.7 72 65.3
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 5.7e-14 83.2 63 66.7
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 4.8e-13 80.1 44 81.8
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 5.5e-09 66.6 79 51.9
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.7e-08 64.3 42 71.4
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 2.6e-06 57.8 37 75.7
Nitab4.5_0000468g0200 Nicotiana tabacum HOM05D004544 ORTHO05D283929 9.7e-06 55.8 183 27.3


User provided reference genes

Program Settings