Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 4.6e-94 347.8 169 100.0
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 1.0e-88 330.1 169 94.7
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 1.4e-79 299.7 169 83.4
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 1.2e-78 296.6 169 82.8
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 6.7e-77 290.8 156 87.8
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 6.7e-77 290.8 156 87.8
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 2.5e-76 288.9 170 81.8
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 2.2e-75 285.8 169 79.9
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 3.6e-70 268.5 155 81.3
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 4.7e-70 268.1 157 80.3
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 2.3e-69 265.8 155 81.3
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 1.5e-68 263.1 155 80.6
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 1.5e-68 263.1 155 80.6
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 1.5e-68 263.1 169 77.5
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 5.7e-68 261.2 161 78.3
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 7.4e-68 260.8 160 80.0
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 9.7e-68 260.4 164 74.4
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 1.3e-67 260.0 158 79.7
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 1.7e-67 259.6 169 77.5
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 1.4e-66 256.5 163 79.1
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 2.4e-66 255.8 162 75.3
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 2.4e-66 255.8 163 77.9
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 4.1e-66 255.0 153 82.4
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 9.1e-66 253.8 162 75.3
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 1.2e-65 253.4 151 79.5
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 2.6e-65 252.3 159 75.5
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 2.6e-65 252.3 154 77.9
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 4.5e-65 251.5 153 80.4
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 5.9e-65 251.1 169 72.8
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 7.7e-65 250.8 154 77.3
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 1.3e-64 250.0 154 77.3
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 1.7e-64 249.6 153 77.1
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 2.9e-64 248.8 158 77.2
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 3.8e-64 248.4 169 69.2
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 1.9e-63 246.1 153 73.9
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 1.9e-63 246.1 167 70.7
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 1.9e-63 246.1 169 73.4
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 1.9e-63 246.1 159 73.6
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 2.5e-63 245.7 162 75.3
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 4.2e-63 245.0 165 70.9
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 1.2e-62 243.4 158 72.8
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 2.7e-62 242.3 157 73.2
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 2.7e-62 242.3 165 68.5
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 4.7e-62 241.5 164 70.7
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 4.7e-62 241.5 164 70.7
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 8.0e-62 240.7 159 74.2
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 1.0e-61 240.4 153 74.5
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 1.4e-61 240.0 153 74.5
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 5.2e-61 238.0 168 72.6
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 6.7e-61 237.7 153 73.9
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 6.7e-61 237.7 153 73.9
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 6.7e-61 237.7 153 73.9
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 8.8e-61 237.3 161 72.0
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 2.0e-60 236.1 153 75.2
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 2.6e-60 235.7 168 70.2
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 4.4e-60 235.0 209 58.9
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 5.7e-60 234.6 168 70.2
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 7.4e-60 234.2 169 68.6
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 9.7e-60 233.8 169 68.6
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 1.3e-59 233.4 160 74.4
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 1.7e-59 233.0 158 73.4
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 2.2e-59 232.6 163 71.2
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 2.8e-59 232.3 158 72.2
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 3.7e-59 231.9 158 72.2
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 3.7e-59 231.9 154 70.8
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 8.2e-59 230.7 158 71.5
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 8.2e-59 230.7 160 74.4
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 8.2e-59 230.7 157 70.7
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 8.2e-59 230.7 154 70.8
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 1.1e-58 230.3 158 71.5
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 2.4e-58 229.2 162 69.8
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 4.1e-58 228.4 169 66.9
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 5.3e-58 228.0 157 69.4
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 7.0e-58 227.6 158 70.9
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 9.1e-58 227.3 152 69.7
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 1.2e-57 226.9 154 72.7
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 2.6e-57 225.7 157 68.8
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 2.6e-57 225.7 238 52.5
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 4.5e-57 224.9 185 63.8
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 2.9e-56 222.2 158 72.2
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 2.9e-56 222.2 156 66.7
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 1.5e-55 219.9 159 67.9
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 3.2e-55 218.8 121 84.3
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 7.2e-55 217.6 152 69.1
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 4.0e-53 211.8 133 75.9
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 2.2e-51 206.1 114 83.3
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 2.2e-51 206.1 161 65.2
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 4.8e-51 204.9 123 78.0
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 1.4e-50 203.4 110 88.2
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 7.7e-49 197.6 120 76.7
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 3.8e-48 195.3 151 61.6
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 1.6e-46 189.9 151 60.9
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 8.0e-46 187.6 169 59.8
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 1.4e-45 186.8 120 72.5
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 1.8e-42 176.4 108 79.6
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 1.2e-41 173.7 111 73.9
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 4.2e-39 165.2 91 82.4
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 7.2e-39 164.5 94 80.9
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 2.8e-35 152.5 153 56.9
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 5.4e-26 121.7 171 41.5
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 7.8e-25 117.9 75 73.3
Glyma.14G034600 Glycine max HOM05D007449 ORTHO05D009504 1.7e-19 100.1 79 60.8
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 3.2e-18 95.9 63 73.0
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 7.0e-18 94.7 98 55.1
Gohir.D03G088000 Gossypium hirsutum HOM05D007449 ORTHO05D000032 3.4e-12 75.9 53 66.0
MBI02_g30541_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 8.3e-11 71.2 81 54.3


User provided reference genes

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