Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G235200 Glycine max HOM05D002508 ORTHO05D005724 1.3e-67 259.6 131 100.0
arahy.Tifrunner.gnm1.ann1.7AZW9Z Arachis hypogaea HOM05D002508 ORTHO05D005724 1.7e-27 126.3 71 94.4
arahy.Tifrunner.gnm1.ann1.9J7RGN Arachis hypogaea HOM05D002508 ORTHO05D005724 1.7e-27 126.3 71 94.4
Glyma.09G227200 Glycine max HOM05D002508 ORTHO05D005724 4.9e-27 124.8 69 94.2
Glyma.12G009600 Glycine max HOM05D002508 ORTHO05D005724 4.9e-27 124.8 69 94.2
VMungo1127G1573 Vigna mungo HOM05D002508 ORTHO05D005724 3.2e-26 122.1 69 91.3
Lj3g0003136 Lotus japonicus HOM05D002508 ORTHO05D005724 4.2e-26 121.7 68 94.1
Phvul.011G011500 Phaseolus vulgaris HOM05D002508 ORTHO05D005724 5.5e-26 121.3 69 89.9
Lalb_Chr03g0024101 Lupinus albus HOM05D002508 ORTHO05D005724 1.3e-24 116.7 69 88.4
Cfa022637 Carpinus fangiana HOM05D002508 ORTHO05D005724 2.3e-24 115.9 69 87.0
Dinv43411 Davidia involucrata HOM05D002508 ORTHO05D005724 2.3e-24 115.9 69 87.0
Hma1.2p1_0685F.1_g203160 Hydrangea macrophylla HOM05D002508 ORTHO05D005724 5.1e-24 114.8 69 85.5
Psat7g200640 Pisum sativum HOM05D002508 ORTHO05D005724 5.1e-24 114.8 68 89.7
SalBow5G1388 Salvia bowleyana HOM05D002508 ORTHO05D005724 5.1e-24 114.8 69 85.5
SalBow5G5543 Salvia bowleyana HOM05D002508 ORTHO05D005724 5.1e-24 114.8 69 85.5
TPR.G30166 Trifolium pratense HOM05D002508 ORTHO05D005724 5.1e-24 114.8 68 88.2
Medtr0059s0060 Medicago truncatula HOM05D002508 ORTHO05D005724 6.7e-24 114.4 68 89.7
PGR031G2824 Punica granatum HOM05D002508 ORTHO05D005724 6.7e-24 114.4 69 85.5
Aqoxy1G00328 Aquilegia oxysepala HOM05D002508 ORTHO05D005724 8.7e-24 114.0 86 72.1
Cc02_g28550 Coffea canephora HOM05D002508 ORTHO05D005724 8.7e-24 114.0 69 84.1
Nn7g36294 Nelumbo nucifera HOM05D002508 ORTHO05D005724 1.1e-23 113.6 69 84.1
Peaxi162Scf00694g00429 Petunia axillaris HOM05D002508 ORTHO05D005724 1.1e-23 113.6 69 84.1
COL.COLO4_12342 Corchorus olitorius HOM05D002508 ORTHO05D005724 1.9e-23 112.8 69 82.6
Gohir.A08G142600 Gossypium hirsutum HOM05D002508 ORTHO05D005724 1.9e-23 112.8 69 84.1
Gohir.D08G163600 Gossypium hirsutum HOM05D002508 ORTHO05D005724 1.9e-23 112.8 69 84.1
Gorai.004G170500 Gossypium raimondii HOM05D002508 ORTHO05D005724 1.9e-23 112.8 69 84.1
Sp5g00070 Schrenkiella parvula HOM05D002508 ORTHO05D005724 1.9e-23 112.8 84 73.8
Ciclev10031877m.g Citrus clementina HOM05D002508 ORTHO05D005724 2.5e-23 112.5 69 84.1
unitig_0.g1394 Utricularia gibba HOM05D002508 ORTHO05D005724 2.5e-23 112.5 69 82.6
unitig_61.g26459 Utricularia gibba HOM05D002508 ORTHO05D005724 2.5e-23 112.5 69 82.6
MSTRG.20562 Avicennia marina HOM05D002508 ORTHO05D005724 3.3e-23 112.1 69 84.1
Nitab4.5_0000707g0020 Nicotiana tabacum HOM05D002508 ORTHO05D005724 3.3e-23 112.1 69 84.1
Nitab4.5_0002388g0060 Nicotiana tabacum HOM05D002508 ORTHO05D005724 3.3e-23 112.1 69 84.1
Sed0007802 Sechium edule HOM05D002508 ORTHO05D005724 3.3e-23 112.1 69 82.6
vmacro21196 Vaccinium macrocarpon HOM05D002508 ORTHO05D005724 3.3e-23 112.1 69 84.1
CsaV3_7G030740 Cucumis sativus L. HOM05D002508 ORTHO05D005724 4.3e-23 111.7 69 82.6
Atru.chr11.2577 Acer truncatum HOM05D002508 ORTHO05D005724 5.6e-23 111.3 120 59.2
Aa31LG10G17360 Aethionema arabicum HOM05D002508 ORTHO05D005724 5.6e-23 111.3 84 72.6
ATR0320G017 Amborella trichopoda HOM05D002508 ORTHO05D005724 5.6e-23 111.3 69 82.6
BcaB02g08057 Brassica carinata HOM05D002508 ORTHO05D005724 5.6e-23 111.3 68 83.8
BcaC02g10355 Brassica carinata HOM05D002508 ORTHO05D005724 5.6e-23 111.3 68 83.8
A04p00070 Brassica napus HOM05D002508 ORTHO05D005724 5.6e-23 111.3 68 83.8
C04p29830 Brassica napus HOM05D002508 ORTHO05D005724 5.6e-23 111.3 68 83.8
BolC4t24515H Brassica oleracea HOM05D000433 ORTHO05D000443 5.6e-23 111.3 68 83.8
BraA04t15727Z Brassica rapa HOM05D002508 ORTHO05D005724 5.6e-23 111.3 68 83.8
Potri.009G057100 Populus trichocarpa HOM05D002508 ORTHO05D005724 5.6e-23 111.3 69 82.6
Rhsim01G0126900 Rhododendron simsii HOM05D002508 ORTHO05D005724 5.6e-23 111.3 84 70.2
Solyc01g087730.4 Solanum lycopersicum HOM05D002508 ORTHO05D005724 5.6e-23 111.3 86 69.8
Sopen01g034680 Solanum pennellii HOM05D002508 ORTHO05D005724 5.6e-23 111.3 86 69.8
AT3G63490 Arabidopsis thaliana HOM05D002508 ORTHO05D005724 7.4e-23 110.9 84 72.6
CSS0027034 Camellia sinensis var. sinensis HOM05D002508 ORTHO05D005724 7.4e-23 110.9 83 72.3
Haze_03134 Corylus avellana HOM05D002508 ORTHO05D005724 7.4e-23 110.9 82 73.2
Migut.B01269 Erythranthe guttata HOM05D002508 ORTHO05D005724 7.4e-23 110.9 69 81.2
CARHR291480 Cardamine hirsuta HOM05D002508 ORTHO05D005724 9.6e-23 110.5 84 72.6
ClCG10G012180 Citrullus lanatus HOM05D002508 ORTHO05D005724 9.6e-23 110.5 69 82.6
Eucgr.G03333 Eucalyptus grandis HOM05D002508 ORTHO05D005724 9.6e-23 110.5 68 83.8
Oeu027379.3 Olea europaea HOM05D002508 ORTHO05D005724 9.6e-23 110.5 69 81.2
Sed0025684 Sechium edule HOM05D002508 ORTHO05D005724 9.6e-23 110.5 68 82.4
PGSC0003DMG400006846 Solanum tuberosum HOM05D002508 ORTHO05D005724 9.6e-23 110.5 86 68.6
THA.LOC104823029 Tarenaya hassleriana HOM05D002508 ORTHO05D005724 9.6e-23 110.5 69 79.7
EL10Ac2g04366 Beta vulgaris HOM05D002508 ORTHO05D005724 1.3e-22 110.2 69 82.6
Thhalv10006062m.g Eutrema salsugineum HOM05D002508 ORTHO05D005724 1.3e-22 110.2 68 82.4
AL5G46350 Arabidopsis lyrata HOM05D002508 ORTHO05D005724 1.6e-22 109.8 84 72.6
AUR62023093 Chenopodium quinoa HOM05D002508 ORTHO05D005724 1.6e-22 109.8 69 81.2
Ca_20460_v3 Cicer arietinum L. HOM05D002508 ORTHO05D005724 1.6e-22 109.8 68 85.3
Ca_30001_v3 Cicer arietinum L. HOM05D002508 ORTHO05D005724 1.6e-22 109.8 68 85.3
DCAR_029704 Daucus carota HOM05D002508 ORTHO05D005724 1.6e-22 109.8 68 82.4
Lsat_1_v5_gn_2_60700 Lactuca sativa HOM05D002508 ORTHO05D005724 1.6e-22 109.8 69 81.2
Potri.001G262400 Populus trichocarpa HOM05D002508 ORTHO05D005724 1.6e-22 109.8 84 71.4
QL04p009835 Quercus lobata HOM05D002508 ORTHO05D005724 2.1e-22 109.4 68 83.8
Sabra09G0041800 Salix brachista HOM05D002508 ORTHO05D005724 2.1e-22 109.4 69 79.7
Thecc.01G406900 Theobroma cacao HOM05D002508 ORTHO05D005724 2.1e-22 109.4 69 81.2
Duzib133G0102 Durio zibethinus HOM05D002508 ORTHO05D005724 2.8e-22 109.0 69 81.2
HanXRQChr14g0439821 Helianthus annuus HOM05D002508 ORTHO05D005724 2.8e-22 109.0 69 76.8
Sabra16G0160900 Salix brachista HOM05D002508 ORTHO05D005724 3.7e-22 108.6 86 69.8
CiPaw.14G002800 Carya illinoinensis HOM05D002508 ORTHO05D005724 4.8e-22 108.2 68 82.4
AUR62009416 Chenopodium quinoa HOM05D002508 ORTHO05D005724 4.8e-22 108.2 81 71.6
Manes.07G010300 Manihot esculenta HOM05D002508 ORTHO05D005724 4.8e-22 108.2 69 78.3
PSO339G4165 Papaver somniferum HOM05D002508 ORTHO05D005724 4.8e-22 108.2 69 81.2
TWI09G0847 Tripterygium wilfordii HOM05D002508 ORTHO05D005724 4.8e-22 108.2 69 79.7
Ah.10g038620 Amaranthus hybridus HOM05D002508 ORTHO05D005724 6.2e-22 107.8 69 81.2
Cpa.g.c29343.2 Carica papaya HOM05D002508 ORTHO05D005724 6.2e-22 107.8 69 78.3
CDE04G1509 Ceratophyllum demersum HOM05D002508 ORTHO05D005724 6.2e-22 107.8 85 69.4
SGA_v2.0_scaffold4G02496 Striga asiatica HOM05D002508 ORTHO05D005724 6.2e-22 107.8 69 79.7
GSVIVG01032196001 Vitis vinifera HOM05D002508 ORTHO05D005724 6.2e-22 107.8 68 80.9
MBI19_g19507_MAGBIO Magnolia biondii HOM05D002508 ORTHO05D005724 8.1e-22 107.5 69 76.8
PSO384G1180 Papaver somniferum HOM05D002508 ORTHO05D005724 8.1e-22 107.5 86 68.6
Sed0022327 Sechium edule HOM05D002508 ORTHO05D005724 8.1e-22 107.5 69 79.7
Carub.0005s3010 Capsella rubella HOM05D002508 ORTHO05D005724 1.1e-21 107.1 68 80.9
Cpa.g.sc125.45 Carica papaya HOM05D002508 ORTHO05D005724 1.1e-21 107.1 72 75.0
CDE02G4361 Ceratophyllum demersum HOM05D002508 ORTHO05D005724 1.1e-21 107.1 85 68.2
MELO3C023997.2 Cucumis melo HOM05D002508 ORTHO05D005724 1.1e-21 107.1 69 79.7
ECA238G3317 Erigeron canadensis HOM05D002508 ORTHO05D005724 1.1e-21 107.1 69 78.3
CSS0049958 Camellia sinensis var. sinensis HOM05D002508 ORTHO05D005724 1.4e-21 106.7 83 69.9
CsaV3_3G031960 Cucumis sativus L. HOM05D002508 ORTHO05D005724 1.4e-21 106.7 69 79.7
Duzib138G1745 Durio zibethinus HOM05D002508 ORTHO05D005724 1.4e-21 106.7 68 80.9
Sc11g0009060 Simmondsia chinensis HOM05D002508 ORTHO05D005724 1.8e-21 106.3 69 76.8
Manes.10G136300 Manihot esculenta HOM05D002508 ORTHO05D005724 2.4e-21 105.9 69 76.8
CANSAT80G0809 Cannabis sativa HOM05D002508 ORTHO05D005724 3.1e-21 105.5 68 79.4
THA.LOC104817578 Tarenaya hassleriana HOM05D002508 ORTHO05D005724 3.1e-21 105.5 69 76.8
Haze_03137 Corylus avellana HOM05D002508 ORTHO05D005724 4.0e-21 105.1 85 69.4
FvH4_7g01650 Fragaria vesca HOM05D002508 ORTHO05D005724 6.9e-21 104.4 68 79.4
Lj7A576T82 Lonicera japonica HOM05D002508 ORTHO05D005724 9.0e-21 104.0 64 82.8
TWI53G1933 Tripterygium wilfordii HOM05D002508 ORTHO05D005724 1.2e-20 103.6 69 76.8
FAN01G2421 Fragaria x ananassa HOM05D002508 ORTHO05D005724 1.5e-20 103.2 68 77.9
FAN03G0396 Fragaria x ananassa HOM05D002508 ORTHO05D005724 1.5e-20 103.2 67 79.1
FAN03G2253 Fragaria x ananassa HOM05D002508 ORTHO05D005724 1.5e-20 103.2 68 77.9
FAN03G2859 Fragaria x ananassa HOM05D002508 ORTHO05D005724 1.5e-20 103.2 67 79.1
FAN10G0515 Fragaria x ananassa HOM05D002508 ORTHO05D005724 1.5e-20 103.2 68 77.9
Prupe.2G022100 Prunus persica HOM05D002508 ORTHO05D005724 1.5e-20 103.2 68 77.9
Hund14183 Selenicereus undatus HOM05D002508 ORTHO05D005724 1.5e-20 103.2 69 76.8
MD07G1022000 Malus domestica HOM05D002508 ORTHO05D005724 2.6e-20 102.4 68 76.5
Os05g0388500 Oryza sativa ssp. japonica HOM05D002508 ORTHO05D005724 2.6e-20 102.4 69 73.9
FAN06G1664 Fragaria x ananassa HOM05D002508 ORTHO05D005724 3.4e-20 102.1 68 77.9
Pp3c23_7820 Physcomitrium patens HOM05D002508 ORTHO05D005724 3.4e-20 102.1 68 77.9
MD02G1302000 Malus domestica HOM05D002508 ORTHO05D005724 4.5e-20 101.7 68 77.9
MD02G1302200 Malus domestica HOM05D002508 ORTHO05D005724 4.5e-20 101.7 68 77.9
TAR633G0895 Trochodendron aralioides HOM05D002508 ORTHO05D005724 4.5e-20 101.7 68 79.4
TAR633G1571 Trochodendron aralioides HOM05D002508 ORTHO05D005724 4.5e-20 101.7 68 79.4
RcHm_v2.0_Chr1g0317921 Rosa chinensis HOM05D002508 ORTHO05D005724 5.8e-20 101.3 68 76.5
Pp3c24_9740 Physcomitrium patens HOM05D002508 ORTHO05D005724 7.6e-20 100.9 69 75.4
Nn2g15221 Nelumbo nucifera HOM05D002508 ORTHO05D005724 2.2e-19 99.4 63 81.0
Zm00001eb287080 Zea mays HOM05D002508 ORTHO05D005724 2.2e-19 99.4 68 72.1
SEGI_22662 Sequoiadendron giganteum HOM05D002508 ORTHO05D005724 3.8e-19 98.6 69 73.9
AagrBONN_evm.TU.Sc2ySwM_228.5151 Anthoceros agrestis HOM05D002508 ORTHO05D005724 1.1e-18 97.1 69 72.5
Glyma.03G107166 Glycine max HOM05D002508 ORTHO05D005724 4.6e-17 91.7 44 93.2
SMO353G0403 Selaginella moellendorffii HOM05D002508 ORTHO05D005724 7.9e-17 90.9 69 66.7
CBR_g8929 Chara braunii HOM05D002508 ORTHO05D005724 1.8e-16 89.7 68 64.7
Mapoly0043s0143 Marchantia polymorpha HOM05D002508 ORTHO05D005724 3.3e-15 85.5 70 61.4
MELO3C000754.2 Cucumis melo HOM05D002508 ORTHO05D005724 1.6e-14 83.2 46 84.8
Cre02.g088900 Chlamydomonas reinhardtii HOM05D002508 ORTHO05D005724 2.7e-09 65.9 73 50.7
ClCG09G004400 Citrullus lanatus HOM05D002508 ORTHO05D005724 1.8e-08 63.2 42 78.6
MCO07G072 Micromonas commoda HOM05D002508 ORTHO05D005724 8.7e-08 60.8 79 41.8
Actinidia19422 Actinidia chinensis HOM05D002508 ORTHO05D005724 2.2e-06 56.2 32 81.2
PRCOL_00003657 Prasinoderma coloniale HOM05D002508 ORTHO05D005724 2.8e-06 55.8 36 69.4
FAN10G3115 Fragaria x ananassa HOM05D002508 ORTHO05D005724 6.3e-06 54.7 41 70.7


User provided reference genes

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