Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G231000 Glycine max HOM05D000230 ORTHO05D214303 7.8e-70 266.9 127 100.0
Glyma.09G032200 Glycine max HOM05D000858 ORTHO05D002556 5.3e-10 68.2 31 96.8
Phvul.006G120700 Phaseolus vulgaris HOM05D000858 ORTHO05D002556 5.3e-10 68.2 31 96.8
VMungo0540G1430 Vigna mungo HOM05D000858 ORTHO05D002556 2.0e-09 66.2 31 93.5
Lj6g0023910 Lotus japonicus HOM05D000858 ORTHO05D002556 2.6e-09 65.9 31 90.3
Psat0s2469g0040 Pisum sativum HOM05D000858 ORTHO05D002556 1.0e-08 63.9 31 90.3
TPR.G29335 Trifolium pratense HOM05D000858 ORTHO05D002556 1.0e-08 63.9 33 81.8
Medtr2g033270 Medicago truncatula HOM05D000858 ORTHO05D002556 1.3e-08 63.5 33 81.8
vmacro18666 Vaccinium macrocarpon HOM05D000230 ORTHO05D000176 2.2e-08 62.8 35 74.3
Glyma.13G165666 Glycine max HOM05D000230 ORTHO05D013113 2.9e-08 62.4 33 78.8
Ca_00949_v3 Cicer arietinum L. HOM05D000858 ORTHO05D002556 3.8e-08 62.0 33 78.8
Lj4C844G3 Lonicera japonica HOM05D000230 ORTHO05D000176 3.8e-08 62.0 31 80.6
ECA238G0891 Erigeron canadensis HOM05D000230 ORTHO05D000176 6.5e-08 61.2 33 75.8
Lj3C835T2 Lonicera japonica HOM05D000858 ORTHO05D002556 6.5e-08 61.2 31 83.9
Peaxi162Scf00183g00421 Petunia axillaris HOM05D000230 ORTHO05D000176 6.5e-08 61.2 33 75.8
Cc07_g18440 Coffea canephora HOM05D000230 ORTHO05D000176 8.5e-08 60.8 33 75.8
Dinv44251 Davidia involucrata HOM05D000858 ORTHO05D002556 8.5e-08 60.8 30 83.3
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 8.5e-08 60.8 33 72.7
Medtr8g093630 Medicago truncatula HOM05D000230 ORTHO05D000176 8.5e-08 60.8 35 74.3
Hma1.2p1_0476F.1_g160885 Hydrangea macrophylla HOM05D000230 ORTHO05D000176 1.1e-07 60.5 33 72.7
Lalb_Chr07g0184441 Lupinus albus HOM05D000230 ORTHO05D000176 1.1e-07 60.5 33 72.7
THA.LOC104807157 Tarenaya hassleriana HOM05D000230 ORTHO05D000176 1.1e-07 60.5 33 69.7
Ca_16943_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 1.4e-07 60.1 33 72.7
Ca_16962_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 1.4e-07 60.1 33 72.7
Dinv24353 Davidia involucrata HOM05D000230 ORTHO05D000176 1.4e-07 60.1 33 69.7
Glyma.04G213100 Glycine max HOM05D000230 ORTHO05D000176 1.4e-07 60.1 33 69.7
Lj4g0004269 Lotus japonicus HOM05D000858 ORTHO05D002556 1.4e-07 60.1 31 83.9
Medtr3g096200 Medicago truncatula HOM05D000230 ORTHO05D000176 1.4e-07 60.1 33 72.7
VMungo1309G2269 Vigna mungo HOM05D000230 ORTHO05D000176 1.4e-07 60.1 33 69.7
AL3G45540 Arabidopsis lyrata HOM05D000230 ORTHO05D000176 1.9e-07 59.7 33 69.7
AT2G13680 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 1.9e-07 59.7 33 69.7
BcaB02g11528 Brassica carinata HOM05D000230 ORTHO05D000176 1.9e-07 59.7 33 69.7
BcaC04g23077 Brassica carinata HOM05D000230 ORTHO05D000176 1.9e-07 59.7 33 69.7
A09p10430 Brassica napus HOM05D000230 ORTHO05D000176 1.9e-07 59.7 33 69.7
C09p12370 Brassica napus HOM05D000230 ORTHO05D000176 1.9e-07 59.7 33 69.7
BolC9t54131H Brassica oleracea HOM05D000230 ORTHO05D000176 1.9e-07 59.7 33 69.7
BraA09t36689Z Brassica rapa HOM05D000230 ORTHO05D000176 1.9e-07 59.7 33 69.7
Carub.0003s2817 Capsella rubella HOM05D000230 ORTHO05D000176 1.9e-07 59.7 33 69.7
CARHR104750 Cardamine hirsuta HOM05D000230 ORTHO05D000176 1.9e-07 59.7 33 69.7
COL.COLO4_34563 Corchorus olitorius HOM05D000858 ORTHO05D002556 1.9e-07 59.7 32 81.2
Thhalv10022518m.g Eutrema salsugineum HOM05D000230 ORTHO05D000176 1.9e-07 59.7 33 69.7
Sp3g27070 Schrenkiella parvula HOM05D000230 ORTHO05D000176 1.9e-07 59.7 33 69.7
vmacro07972 Vaccinium macrocarpon HOM05D000858 ORTHO05D002556 1.9e-07 59.7 30 83.3
DCAR_010255 Daucus carota HOM05D000230 ORTHO05D000176 2.5e-07 59.3 49 57.1
Dinv15131 Davidia involucrata HOM05D000858 ORTHO05D002556 2.5e-07 59.3 30 80.0
Duzib151G0830 Durio zibethinus HOM05D000858 ORTHO05D002556 2.5e-07 59.3 30 83.3
FAN19G2937 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.5e-07 59.3 32 78.1
FAN23G0965 Fragaria x ananassa HOM05D000230 ORTHO05D000176 2.5e-07 59.3 32 78.1
Psat7g046280 Pisum sativum HOM05D000230 ORTHO05D000176 2.5e-07 59.3 33 78.8
ECA234G3310 Erigeron canadensis HOM05D000230 ORTHO05D000176 3.2e-07 58.9 33 69.7
HanXRQChr09g0258671 Helianthus annuus HOM05D000230 ORTHO05D000176 3.2e-07 58.9 33 69.7
Psat5g062520 Pisum sativum HOM05D000230 ORTHO05D000176 3.2e-07 58.9 33 69.7
Potri.010G149700 Populus trichocarpa HOM05D000858 ORTHO05D002556 3.2e-07 58.9 30 83.3
Sabra10G0115400 Salix brachista HOM05D000858 ORTHO05D002556 3.2e-07 58.9 30 83.3
Solyc11g005980.3 Solanum lycopersicum HOM05D000230 ORTHO05D000176 3.2e-07 58.9 33 69.7
Sopen11g001920 Solanum pennellii HOM05D000230 ORTHO05D000176 3.2e-07 58.9 33 69.7
Glyma.05G191600 Glycine max HOM05D000230 ORTHO05D000176 4.2e-07 58.5 33 78.8
Glyma.08G156800 Glycine max HOM05D000230 ORTHO05D000176 4.2e-07 58.5 33 78.8
Lalb_Chr15g0089061 Lupinus albus HOM05D000858 ORTHO05D002556 4.2e-07 58.5 31 80.6
Sabra08G0076900 Salix brachista HOM05D000858 ORTHO05D002556 4.2e-07 58.5 31 80.6
SGA_v2.0_scaffold41G15755 Striga asiatica HOM05D000230 ORTHO05D000176 4.2e-07 58.5 33 69.7
TPR.G37312 Trifolium pratense HOM05D000230 ORTHO05D010859 4.2e-07 58.5 32 75.0
TAR636G1873 Trochodendron aralioides HOM05D000858 ORTHO05D002556 4.2e-07 58.5 30 80.0
Lalb_Chr13g0298721 Lupinus albus HOM05D000858 ORTHO05D002556 5.5e-07 58.2 31 80.6
PSO541G0109 Papaver somniferum HOM05D000230 ORTHO05D000176 5.5e-07 58.2 33 72.7
PSO675G2931 Papaver somniferum HOM05D000230 ORTHO05D000176 5.5e-07 58.2 33 72.7
PGR119G1551 Punica granatum HOM05D000230 ORTHO05D000176 5.5e-07 58.2 33 66.7
QL06p013209 Quercus lobata HOM05D000858 ORTHO05D002556 5.5e-07 58.2 31 77.4
Thecc.04G306900 Theobroma cacao HOM05D000858 ORTHO05D002556 5.5e-07 58.2 30 83.3
CAN.G652.13 Capsicum annuum HOM05D000230 ORTHO05D000176 7.2e-07 57.8 30 76.7
CiPaw.01G133800 Carya illinoinensis HOM05D000858 ORTHO05D002556 7.2e-07 57.8 30 76.7
Ca_17639_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 7.2e-07 57.8 33 75.8
Lalb_Chr11g0068391 Lupinus albus HOM05D000230 ORTHO05D000176 7.2e-07 57.8 33 63.6
Lalb_Chr23g0272591 Lupinus albus HOM05D000230 ORTHO05D000176 7.2e-07 57.8 33 63.6
Manes.15G002900 Manihot esculenta HOM05D000858 ORTHO05D002556 7.2e-07 57.8 30 80.0
PSO135G0764 Papaver somniferum HOM05D000230 ORTHO05D000176 7.2e-07 57.8 54 50.0
PSO339G5013 Papaver somniferum HOM05D000230 ORTHO05D000176 7.2e-07 57.8 54 50.0
TAR365G1032 Trochodendron aralioides HOM05D000858 ORTHO05D002556 7.2e-07 57.8 30 80.0
Carub.0001s3709 Capsella rubella HOM05D000858 ORTHO05D002556 9.4e-07 57.4 31 77.4
CARHR037620 Cardamine hirsuta HOM05D000858 ORTHO05D002556 9.4e-07 57.4 31 77.4
DCAR_014339 Daucus carota HOM05D000230 ORTHO05D000176 9.4e-07 57.4 33 72.7
Eucgr.B03983 Eucalyptus grandis HOM05D000858 ORTHO05D002556 9.4e-07 57.4 30 80.0
Thhalv10012193m.g Eutrema salsugineum HOM05D000858 ORTHO05D002556 9.4e-07 57.4 31 77.4
Manes.03G208300 Manihot esculenta HOM05D000858 ORTHO05D002556 9.4e-07 57.4 30 80.0
Nn3g21813 Nelumbo nucifera HOM05D000858 ORTHO05D002556 9.4e-07 57.4 31 74.2
QL06p028617 Quercus lobata HOM05D000230 ORTHO05D000176 9.4e-07 57.4 35 65.7
Thecc.01G131200 Theobroma cacao HOM05D000230 ORTHO05D000176 9.4e-07 57.4 33 66.7
arahy.Tifrunner.gnm1.ann1.JS5KS9 Arachis hypogaea HOM05D000230 ORTHO05D000176 1.2e-06 57.0 34 70.6
BcaB02g11356 Brassica carinata HOM05D000858 ORTHO05D002556 1.2e-06 57.0 31 77.4
FvH4_1g24300 Fragaria vesca HOM05D000230 ORTHO05D000176 1.2e-06 57.0 33 72.7
FAN23G2391 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.2e-06 57.0 33 72.7
FAN26G0885 Fragaria x ananassa HOM05D000230 ORTHO05D000176 1.2e-06 57.0 33 72.7
Lj4g0022892 Lotus japonicus HOM05D000230 ORTHO05D000176 1.2e-06 57.0 33 72.7
RcHm_v2.0_Chr2g0120781 Rosa chinensis HOM05D000230 ORTHO05D000176 1.2e-06 57.0 31 77.4
Cpa.g.sc9.2 Carica papaya HOM05D000858 ORTHO05D002556 1.6e-06 56.6 30 83.3
Ciclev10000018m.g Citrus clementina HOM05D000230 ORTHO05D000176 1.6e-06 56.6 33 60.6
Duzib212G0097 Durio zibethinus HOM05D000858 ORTHO05D002556 1.6e-06 56.6 30 80.0
Glyma.07G236100 Glycine max HOM05D000858 ORTHO05D002556 1.6e-06 56.6 31 80.6
Glyma.17G037300 Glycine max HOM05D000858 ORTHO05D002556 1.6e-06 56.6 31 80.6
Medtr3g015110 Medicago truncatula HOM05D000858 ORTHO05D002556 1.6e-06 56.6 33 69.7
Zm00001eb163000 Zea mays HOM05D000230 ORTHO05D000176 1.6e-06 56.6 33 66.7
Aa31LG8G12320 Aethionema arabicum HOM05D000230 ORTHO05D000176 2.1e-06 56.2 33 66.7
Aqoxy2G02634 Aquilegia oxysepala HOM05D000858 ORTHO05D002556 2.1e-06 56.2 30 70.0
arahy.Tifrunner.gnm1.ann1.B771QR Arachis hypogaea HOM05D000230 ORTHO05D000176 2.1e-06 56.2 30 80.0
arahy.Tifrunner.gnm1.ann1.YYM7FJ Arachis hypogaea HOM05D000230 ORTHO05D000176 2.1e-06 56.2 30 80.0
Cfa015684 Carpinus fangiana HOM05D000858 ORTHO05D002556 2.1e-06 56.2 31 77.4
COL.COLO4_35732 Corchorus olitorius HOM05D000230 ORTHO05D000176 2.1e-06 56.2 30 73.3
DCAR_002522 Daucus carota HOM05D000858 ORTHO05D002556 2.1e-06 56.2 32 71.9
Eucgr.I00208 Eucalyptus grandis HOM05D000230 ORTHO05D000176 2.1e-06 56.2 33 66.7
Lsat_1_v5_gn_6_70461 Lactuca sativa HOM05D000858 ORTHO05D002556 2.1e-06 56.2 30 73.3
MBI19_g03287_MAGBIO Magnolia biondii HOM05D000858 ORTHO05D002556 2.1e-06 56.2 30 73.3
SHI11473 Sapria himalayana HOM05D000230 ORTHO05D000176 2.1e-06 56.2 33 69.7
HPP92_017512 Vanilla planifolia HOM05D000230 ORTHO05D000176 2.1e-06 56.2 33 69.7
GSVIVG01034945001 Vitis vinifera HOM05D000858 ORTHO05D002556 2.1e-06 56.2 30 80.0
arahy.Tifrunner.gnm1.ann1.4YM5KJ Arachis hypogaea HOM05D000230 ORTHO05D000176 2.7e-06 55.8 33 66.7
arahy.Tifrunner.gnm1.ann1.DN5312 Arachis hypogaea HOM05D000230 ORTHO05D000176 2.7e-06 55.8 33 66.7
BcaC05g27599 Brassica carinata HOM05D000858 ORTHO05D002556 2.7e-06 55.8 31 77.4
A05p21250 Brassica napus HOM05D000858 ORTHO05D002556 2.7e-06 55.8 31 77.4
C05p35850 Brassica napus HOM05D000858 ORTHO05D002556 2.7e-06 55.8 31 77.4
BraA05t21033Z Brassica rapa HOM05D000858 ORTHO05D002556 2.7e-06 55.8 31 77.4
ECA233G5662 Erigeron canadensis HOM05D000858 ORTHO05D002556 2.7e-06 55.8 30 76.7
FvH4_4g20730 Fragaria vesca HOM05D000858 ORTHO05D002556 2.7e-06 55.8 31 80.6
Lalb_Chr07g0181891 Lupinus albus HOM05D000858 ORTHO05D002556 2.7e-06 55.8 31 74.2
VMungo0251G2149 Vigna mungo HOM05D000230 ORTHO05D000176 2.7e-06 55.8 33 72.7
Aqoxy7G03480 Aquilegia oxysepala HOM05D000230 ORTHO05D000176 3.6e-06 55.5 32 71.9
arahy.Tifrunner.gnm1.ann1.V659E7 Arachis hypogaea HOM05D000230 ORTHO05D000176 3.6e-06 55.5 33 66.7
MBI06_g15031_MAGBIO Magnolia biondii HOM05D000230 ORTHO05D000176 3.6e-06 55.5 63 44.4
PSO384G4929 Papaver somniferum HOM05D000230 ORTHO05D000176 3.6e-06 55.5 30 80.0
Phvul.003G118300 Phaseolus vulgaris HOM05D000858 ORTHO05D002556 3.6e-06 55.5 31 80.6
Rhsim04G0242800 Rhododendron simsii HOM05D000858 ORTHO05D002556 3.6e-06 55.5 30 76.7
Sed0007581 Sechium edule HOM05D000230 ORTHO05D000176 3.6e-06 55.5 33 66.7
Hund12766 Selenicereus undatus HOM05D000230 ORTHO05D000176 3.6e-06 55.5 32 65.6
VMungo1215G3082 Vigna mungo HOM05D000858 ORTHO05D002556 3.6e-06 55.5 31 80.6
arahy.Tifrunner.gnm1.ann1.3B8AB8 Arachis hypogaea HOM05D000858 ORTHO05D002556 4.7e-06 55.1 31 80.6
arahy.Tifrunner.gnm1.ann1.909YBZ Arachis hypogaea HOM05D000858 ORTHO05D002556 4.7e-06 55.1 31 77.4
arahy.Tifrunner.gnm1.ann1.MX5WXF Arachis hypogaea HOM05D000858 ORTHO05D002556 4.7e-06 55.1 31 80.6
arahy.Tifrunner.gnm1.ann1.VIJ10A Arachis hypogaea HOM05D000858 ORTHO05D002556 4.7e-06 55.1 31 77.4
Ca_14606_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 4.7e-06 55.1 64 37.5
Haze_00840 Corylus avellana HOM05D000858 ORTHO05D002556 4.7e-06 55.1 30 76.7
Oeu046513.3 Olea europaea HOM05D000230 ORTHO05D000176 4.7e-06 55.1 32 75.0
Hund04407 Selenicereus undatus HOM05D000230 ORTHO05D000176 4.7e-06 55.1 33 66.7
TAR362G0803 Trochodendron aralioides HOM05D000858 ORTHO05D002556 4.7e-06 55.1 30 80.0
GSVIVG01026489001 Vitis vinifera HOM05D000230 ORTHO05D000176 4.7e-06 55.1 30 76.7
CANSAT01G0637 Cannabis sativa HOM05D000230 ORTHO05D000176 6.1e-06 54.7 33 63.6
Cpa.g.sc3659.2 Carica papaya HOM05D000230 ORTHO05D013113 6.1e-06 54.7 63 41.3
FAN12G3342 Fragaria x ananassa HOM05D000858 ORTHO05D002556 6.1e-06 54.7 30 80.0
Psat0s1953g0280 Pisum sativum HOM05D000858 ORTHO05D002556 6.1e-06 54.7 31 74.2
TWI79G1186 Tripterygium wilfordii HOM05D000230 ORTHO05D000176 6.1e-06 54.7 33 69.7
AL1G54500 Arabidopsis lyrata HOM05D000858 ORTHO05D002556 7.9e-06 54.3 31 74.2
AT1G47990 Arabidopsis thaliana HOM05D000858 ORTHO05D002556 7.9e-06 54.3 31 74.2
BolC5t32302H Brassica oleracea HOM05D000858 ORTHO05D002556 7.9e-06 54.3 31 74.2
CSS0001566 Camellia sinensis var. sinensis HOM05D000858 ORTHO05D002556 7.9e-06 54.3 30 73.3
Ca_02881_v3 Cicer arietinum L. HOM05D000230 ORTHO05D000176 7.9e-06 54.3 35 62.9
Haze_25227 Corylus avellana HOM05D000230 ORTHO05D000176 7.9e-06 54.3 33 66.7
Thhalv10021102m.g Eutrema salsugineum HOM05D000858 ORTHO05D002556 7.9e-06 54.3 31 71.0
FAN07G2004 Fragaria x ananassa HOM05D000858 ORTHO05D002556 7.9e-06 54.3 30 80.0
HanXRQChr08g0235491 Helianthus annuus HOM05D000858 ORTHO05D002556 7.9e-06 54.3 30 76.7
Lj1g0014162 Lotus japonicus HOM05D000230 ORTHO05D000176 7.9e-06 54.3 33 63.6
MD02G1211500 Malus domestica HOM05D000230 ORTHO05D000176 7.9e-06 54.3 33 69.7
Manes.12G155300 Manihot esculenta HOM05D000230 ORTHO05D000176 7.9e-06 54.3 33 66.7
TPR.G16789 Trifolium pratense HOM05D000230 ORTHO05D000176 7.9e-06 54.3 55 45.5


User provided reference genes

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