Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 1.6e-104 382.9 204 100.0
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 8.3e-90 334.0 204 90.7
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 3.2e-81 305.4 208 78.8
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 1.1e-78 297.0 213 80.3
Lj3g0021891 Lotus japonicus HOM05D007501 ORTHO05D009528 1.1e-68 263.8 207 75.4
Psat4g135600 Pisum sativum HOM05D007501 ORTHO05D009528 6.9e-60 234.6 216 67.6
TPR.G16483 Trifolium pratense HOM05D007501 ORTHO05D009528 1.0e-55 220.7 217 59.9
Medtr8g042500 Medicago truncatula HOM05D007501 ORTHO05D009528 1.3e-50 203.8 221 61.1
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 4.3e-46 188.7 180 60.0
arahy.Tifrunner.gnm1.ann1.652QPS Arachis hypogaea HOM05D007501 ORTHO05D009528 8.5e-42 174.5 192 56.2
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 4.2e-41 172.2 211 49.3
Lalb_Chr03g0031351 Lupinus albus HOM05D007501 ORTHO05D009528 9.3e-41 171.0 160 70.0
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 2.5e-38 162.9 204 49.5
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 1.6e-37 160.2 208 48.6
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 2.8e-37 159.5 204 46.6
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 3.7e-37 159.1 204 46.1
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 6.3e-37 158.3 205 45.4
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 1.4e-36 157.1 204 45.6
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 1.8e-36 156.8 208 48.1
FAN25G1377 Fragaria x ananassa HOM05D007501 ORTHO05D009528 3.4e-35 152.5 208 47.1
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 4.5e-35 152.1 209 46.9
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 1.3e-34 150.6 204 47.1
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 1.7e-34 150.2 208 45.2
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 2.2e-34 149.8 213 46.5
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 2.2e-34 149.8 208 46.6
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 2.2e-34 149.8 208 46.6
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 2.2e-34 149.8 205 47.8
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 1.1e-33 147.5 204 42.6
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 2.5e-33 146.4 200 44.0
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 4.2e-33 145.6 182 49.5
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 5.5e-33 145.2 204 43.1
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 5.5e-33 145.2 206 47.1
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 1.2e-32 144.1 210 43.3
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 6.1e-32 141.7 206 44.7
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 1.4e-31 140.6 204 44.6
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 3.9e-31 139.0 209 44.5
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 6.7e-31 138.3 181 46.4
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 3.3e-30 136.0 216 44.4
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 7.4e-30 134.8 204 42.6
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 8.2e-29 131.3 208 38.9
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 1.4e-28 130.6 178 44.4
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 1.4e-28 130.6 202 43.6
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 1.8e-28 130.2 208 44.2
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 3.1e-28 129.4 207 40.1
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 4.1e-28 129.0 231 37.7
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 9.1e-28 127.9 217 40.6
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 9.1e-28 127.9 179 44.1
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 1.2e-27 127.5 208 38.0
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 2.0e-27 126.7 208 40.9
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 5.9e-27 125.2 207 42.0
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 7.7e-27 124.8 201 40.3
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 1.0e-26 124.4 208 40.4
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 1.3e-26 124.0 206 39.3
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 1.7e-26 123.6 174 44.3
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 8.5e-26 121.3 201 39.3
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 1.1e-25 120.9 212 41.0
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 2.5e-25 119.8 206 42.2
SGA_v2.0_scaffold73G24380 Striga asiatica HOM05D007501 ORTHO05D009528 7.9e-24 114.8 208 38.5
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 3.9e-23 112.5 193 38.9
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 2.0e-22 110.2 204 37.7
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 2.2e-21 106.7 204 38.7
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 6.3e-21 105.1 207 38.6
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 1.4e-20 104.0 140 45.0
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 1.4e-20 104.0 204 37.7
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 1.8e-20 103.6 204 37.7
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 1.8e-20 103.6 204 37.7
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 2.4e-20 103.2 204 38.7
CAN.G375.54 Capsicum annuum HOM05D007501 ORTHO05D009528 5.3e-20 102.1 171 41.5
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 5.3e-20 102.1 179 41.3
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 5.3e-20 102.1 178 38.8
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 1.6e-19 100.5 204 37.3
Peaxi162Scf00111g00124 Petunia axillaris HOM05D007501 ORTHO05D009528 2.0e-19 100.1 172 41.9
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 3.5e-19 99.4 206 42.2
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 4.5e-19 99.0 204 36.3
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 5.9e-19 98.6 204 37.7
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 5.9e-19 98.6 179 39.1
Nitab4.5_0000383g0020 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.3e-18 97.4 163 41.7
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 2.2e-18 96.7 204 38.7
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 3.8e-18 95.9 205 38.5
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 8.5e-18 94.7 187 38.5
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.9e-17 93.6 173 37.6
Dinv26703 Davidia involucrata HOM05D007501 ORTHO05D009528 3.2e-17 92.8 148 41.9
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 3.2e-17 92.8 174 39.1
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 4.7e-16 89.0 178 38.2
Migut.M00689 Erythranthe guttata HOM05D007501 ORTHO05D009528 8.0e-16 88.2 214 37.9
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 3.0e-15 86.3 115 46.1
CsaV3_4G032800 Cucumis sativus L. HOM05D007501 ORTHO05D009528 5.7e-14 82.0 204 33.3
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.3e-13 80.9 171 35.1
Sed0021060 Sechium edule HOM05D007501 ORTHO05D009528 8.2e-13 78.2 82 52.4
MELO3C027342.2 Cucumis melo HOM05D007501 ORTHO05D009528 4.1e-12 75.9 180 33.9
Peaxi162Scf00069g01713 Petunia axillaris HOM05D007501 ORTHO05D009528 9.1e-12 74.7 82 52.4
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 1.2e-11 74.3 176 33.0
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 2.7e-11 73.2 118 44.9
ClCG11G017140 Citrullus lanatus HOM05D007501 ORTHO05D009528 6.5e-10 68.6 175 32.6
Zm00001eb055040 Zea mays HOM05D007501 ORTHO05D009528 4.0e-07 59.3 71 50.7
Os02g0320600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 1.2e-06 57.8 44 59.1
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 3.4e-06 56.2 57 43.9
Os02g0321600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 4.4e-06 55.8 29 72.4
SEGI_41065 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 4.4e-06 55.8 38 60.5
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 5.7e-06 55.5 67 38.8
Oeu054753.1 Olea europaea HOM05D008294 ORTHO05D010468 7.5e-06 55.1 86 38.4
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 9.8e-06 54.7 56 44.6
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 9.8e-06 54.7 56 44.6
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 9.8e-06 54.7 67 38.8


User provided reference genes

Program Settings