Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 4.1e-90 334.7 170 100.0
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 9.7e-84 313.5 160 98.1
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 4.1e-74 281.6 160 86.9
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.2e-70 270.0 162 84.6
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 8.8e-69 263.8 160 85.0
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.5e-68 263.1 160 81.9
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 7.5e-68 260.8 160 82.5
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 1.4e-66 256.5 162 81.5
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 7.7e-65 250.8 161 80.1
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 3.8e-64 248.4 160 80.0
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 2.0e-60 236.1 160 72.5
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 4.4e-60 235.0 154 76.0
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.8e-59 232.3 162 71.0
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 3.7e-59 231.9 160 71.2
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 6.3e-59 231.1 153 74.5
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 8.3e-59 230.7 160 71.9
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.1e-58 230.3 153 73.9
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 1.1e-58 230.3 160 71.9
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.4e-58 229.9 160 69.4
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.4e-58 229.9 160 71.9
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 1.4e-58 229.9 154 73.4
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.4e-58 229.9 160 71.9
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.4e-58 229.9 160 71.2
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 2.4e-58 229.2 160 71.2
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 2.4e-58 229.2 160 71.9
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.1e-58 228.8 160 71.9
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 3.1e-58 228.8 160 70.6
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.1e-58 228.8 160 71.2
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 3.1e-58 228.8 160 70.6
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 4.1e-58 228.4 154 72.7
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 4.1e-58 228.4 160 71.2
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.1e-58 228.4 160 71.2
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 4.1e-58 228.4 160 70.6
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 5.4e-58 228.0 160 70.6
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 5.4e-58 228.0 154 72.7
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 5.4e-58 228.0 154 72.1
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 7.0e-58 227.6 159 71.1
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 7.0e-58 227.6 160 70.6
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 9.2e-58 227.3 160 70.0
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 9.2e-58 227.3 160 70.0
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 9.2e-58 227.3 160 69.4
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 1.2e-57 226.9 154 72.7
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.2e-57 226.9 160 70.6
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.2e-57 226.9 160 70.6
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 1.2e-57 226.9 160 69.4
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.6e-57 226.5 154 72.7
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 1.6e-57 226.5 160 70.6
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 1.6e-57 226.5 160 71.2
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.6e-57 226.5 160 69.4
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 2.0e-57 226.1 160 69.4
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 2.0e-57 226.1 160 70.0
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 2.0e-57 226.1 154 72.7
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 2.0e-57 226.1 154 72.7
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 2.0e-57 226.1 154 72.7
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 2.0e-57 226.1 160 69.4
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 2.7e-57 225.7 160 70.0
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 2.7e-57 225.7 160 70.0
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 2.7e-57 225.7 160 69.4
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 2.7e-57 225.7 154 72.1
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.7e-57 225.7 160 70.6
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 2.7e-57 225.7 154 72.7
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 3.5e-57 225.3 159 71.1
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 3.5e-57 225.3 160 69.4
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 3.5e-57 225.3 154 72.1
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 3.5e-57 225.3 160 70.0
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 3.5e-57 225.3 154 72.7
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 4.5e-57 224.9 160 69.4
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 4.5e-57 224.9 154 71.4
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 4.5e-57 224.9 160 69.4
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 5.9e-57 224.6 158 70.3
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 5.9e-57 224.6 160 69.4
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 5.9e-57 224.6 160 69.4
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 5.9e-57 224.6 157 70.7
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 5.9e-57 224.6 160 68.1
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 5.9e-57 224.6 159 70.4
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 7.7e-57 224.2 154 72.1
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 7.7e-57 224.2 160 70.0
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 7.7e-57 224.2 160 70.0
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 7.7e-57 224.2 159 70.4
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 7.7e-57 224.2 160 68.8
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 7.7e-57 224.2 160 68.8
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 7.7e-57 224.2 160 69.4
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 7.7e-57 224.2 160 68.8
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 7.7e-57 224.2 160 68.8
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 7.7e-57 224.2 155 71.6
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 1.3e-56 223.4 159 69.8
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 1.3e-56 223.4 160 70.0
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.3e-56 223.4 154 71.4
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.3e-56 223.4 160 68.8
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 1.3e-56 223.4 160 70.0
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.7e-56 223.0 154 72.7
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.7e-56 223.0 154 72.7
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 1.7e-56 223.0 154 72.7
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.7e-56 223.0 160 68.8
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 1.7e-56 223.0 160 68.8
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 1.7e-56 223.0 160 68.8
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 2.3e-56 222.6 160 68.8
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 2.3e-56 222.6 153 71.2
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.9e-56 222.2 160 68.1
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 2.9e-56 222.2 160 68.1
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 3.8e-56 221.9 154 69.5
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 3.8e-56 221.9 154 71.4
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 3.8e-56 221.9 154 70.8
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 3.8e-56 221.9 160 67.5
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 5.0e-56 221.5 154 70.8
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 5.0e-56 221.5 160 68.8
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 5.0e-56 221.5 153 70.6
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 8.6e-56 220.7 160 67.5
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 8.6e-56 220.7 160 67.5
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.5e-55 219.9 154 70.8
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-55 219.5 154 70.1
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 1.9e-55 219.5 154 70.1
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 1.9e-55 219.5 154 70.1
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 1.9e-55 219.5 154 70.1
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.9e-55 219.5 154 70.1
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 1.9e-55 219.5 154 70.1
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 1.9e-55 219.5 160 67.5
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 2.5e-55 219.2 160 66.2
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 3.3e-55 218.8 160 67.5
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 4.3e-55 218.4 154 69.5
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 5.6e-55 218.0 154 69.5
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 5.6e-55 218.0 154 69.5
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 5.6e-55 218.0 154 69.5
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 5.6e-55 218.0 154 69.5
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 5.6e-55 218.0 154 69.5
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 7.3e-55 217.6 154 68.8
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 7.3e-55 217.6 154 68.8
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 7.3e-55 217.6 154 68.8
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 7.3e-55 217.6 160 67.5
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 9.5e-55 217.2 154 69.5
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 1.2e-54 216.9 170 66.5
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 1.6e-54 216.5 154 68.2
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 1.6e-54 216.5 154 68.2
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.6e-54 216.5 161 65.2
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 2.1e-54 216.1 154 69.5
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 2.1e-54 216.1 154 69.5
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 2.8e-54 215.7 154 68.2
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 3.6e-54 215.3 159 67.3
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.5e-52 209.9 152 68.4
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 3.7e-51 205.3 139 71.9
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 6.4e-51 204.5 160 62.5
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 6.4e-51 204.5 160 62.5
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.1e-50 203.8 161 64.0
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.1e-50 203.8 160 63.1
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 7.0e-50 201.1 159 64.8
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 8.6e-48 194.1 159 63.5
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.0e-45 187.2 133 68.4
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.0e-45 187.2 133 68.4
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 9.8e-44 180.6 160 58.8
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.1e-30 136.3 144 47.9
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 2.0e-28 129.8 161 50.3
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 2.9e-27 125.9 88 68.2
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 4.1e-26 122.1 95 65.3
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.3e-19 100.5 66 68.2
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.3e-14 84.0 84 56.0
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.1e-14 83.2 84 52.4
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 2.4e-10 69.7 62 61.3
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 4.8e-06 55.5 34 85.3


User provided reference genes

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