Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 7.4e-172 607.1 295 100.0
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 4.5e-161 571.2 290 94.1
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 3.9e-149 531.6 298 85.2
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 1.3e-147 526.6 295 84.7
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 1.2e-142 510.0 297 82.2
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 1.0e-141 506.9 294 83.3
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 3.1e-138 495.4 297 82.2
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 7.7e-137 490.7 302 80.5
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 1.8e-133 479.6 291 80.4
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 2.3e-133 479.2 291 80.4
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 5.2e-133 478.0 294 78.9
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 5.9e-129 464.5 294 78.2
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 4.4e-124 448.4 286 77.3
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 5.7e-124 448.0 301 72.4
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 7.5e-124 447.6 282 75.9
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.4e-122 442.6 299 74.2
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.6e-121 439.9 287 75.6
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.6e-121 439.9 299 73.9
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 3.5e-121 438.7 289 72.0
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 1.0e-120 437.2 294 71.4
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 1.3e-120 436.8 279 73.8
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 1.7e-120 436.4 272 74.6
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 2.9e-120 435.6 281 74.0
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 3.8e-120 435.3 269 77.7
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 1.5e-119 433.3 254 78.7
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 9.5e-119 430.6 278 74.1
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 9.5e-119 430.6 273 74.0
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 1.2e-118 430.3 286 72.7
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 1.2e-118 430.3 280 73.9
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 1.6e-118 429.9 271 76.0
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.7e-118 428.3 253 79.4
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.0e-117 427.2 278 73.7
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.8e-117 426.4 300 69.7
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 8.9e-117 424.1 298 70.8
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 1.2e-116 423.7 285 71.2
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 2.6e-116 422.5 292 69.5
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 7.5e-116 421.0 289 70.9
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 9.8e-116 420.6 272 72.8
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 9.8e-116 420.6 300 69.7
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.3e-115 420.2 300 68.7
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.2e-115 419.5 267 73.8
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.2e-115 419.5 296 70.3
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 3.7e-115 418.7 278 72.3
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 8.3e-115 417.5 274 71.5
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 1.1e-114 417.2 291 69.4
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.4e-114 416.8 276 71.0
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.4e-114 416.8 278 72.3
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.4e-114 416.0 279 70.6
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.1e-114 415.6 269 73.6
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 1.2e-113 413.7 288 71.2
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 3.5e-113 412.1 292 68.5
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 5.9e-113 411.4 292 69.9
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 8.6e-112 407.5 289 68.5
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 8.6e-112 407.5 296 66.6
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 1.9e-111 406.4 279 71.0
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 4.3e-111 405.2 262 74.4
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 5.6e-111 404.8 279 70.6
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 7.3e-111 404.4 285 69.8
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 1.6e-110 403.3 290 67.9
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.6e-110 403.3 299 66.2
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 1.6e-110 403.3 299 66.2
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 2.1e-110 402.9 279 69.2
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 2.1e-110 402.9 290 67.9
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 4.7e-110 401.7 292 68.5
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 6.1e-110 401.4 288 67.4
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 1.2e-108 397.1 273 71.4
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 1.5e-108 396.7 288 68.1
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 2.0e-108 396.4 283 67.8
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 5.8e-108 394.8 258 72.9
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 5.8e-108 394.8 284 69.0
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 9.8e-108 394.0 265 70.2
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 9.8e-108 394.0 243 77.0
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 9.8e-108 394.0 286 67.5
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.2e-107 392.9 288 66.7
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 2.2e-107 392.9 243 76.5
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 2.2e-107 392.9 256 71.1
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 3.5e-105 385.6 295 64.4
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 1.3e-104 383.6 286 66.1
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 1.9e-103 379.8 224 78.6
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 8.0e-102 374.4 273 68.1
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.1e-101 374.0 279 68.8
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 6.8e-101 371.3 286 63.6
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 2.9e-99 365.9 243 74.9
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.9e-99 365.2 224 76.8
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 4.9e-99 365.2 279 60.6
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 4.6e-97 358.6 273 62.6
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 6.0e-97 358.2 375 49.6
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 8.6e-96 354.4 238 74.4
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 1.2e-94 350.5 282 61.3
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 1.4e-93 347.1 282 61.3
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 5.2e-93 345.1 289 58.5
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 4.4e-92 342.0 283 57.6
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 5.8e-92 341.7 230 69.6
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 1.7e-91 340.1 261 62.5
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 4.9e-91 338.6 221 70.6
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 1.9e-90 336.7 290 56.6
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 1.0e-88 330.9 247 64.4
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 4.7e-86 322.0 264 58.7
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 8.1e-86 321.2 250 60.8
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 8.1e-86 321.2 250 60.8
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 8.1e-86 321.2 250 60.8
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 1.4e-85 320.5 255 60.8
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 1.8e-85 320.1 266 60.2
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 3.4e-84 315.8 266 57.5
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 3.4e-84 315.8 266 57.5
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 4.4e-84 315.5 262 58.0
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 7.6e-84 314.7 251 62.9
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 1.3e-83 313.9 248 60.9
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 1.3e-83 313.9 247 61.1
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 1.4e-82 310.5 247 60.7
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 5.4e-82 308.5 207 69.1
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 3.3e-79 299.3 210 68.6
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 2.8e-78 296.2 257 56.0
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.8e-77 293.5 234 60.3
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 2.2e-75 286.6 266 55.6
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 2.7e-73 279.6 224 61.2
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 7.3e-71 271.6 203 63.1
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 6.2e-70 268.5 234 55.6
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 9.6e-63 244.6 199 58.3
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 1.1e-58 231.1 262 49.2
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 1.2e-57 227.6 240 47.9
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 1.8e-56 223.8 238 47.5
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 8.7e-56 221.5 137 74.5
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 1.4e-50 204.1 202 55.4
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 5.9e-44 182.2 120 70.0
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 2.5e-42 176.8 300 36.0
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 5.0e-35 152.5 97 78.4
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 4.7e-33 146.0 133 50.4
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 2.4e-29 133.7 212 34.9
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 3.5e-28 129.8 103 65.0
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 3.5e-20 103.2 159 36.5
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 5.9e-20 102.4 142 37.3
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 2.5e-18 97.1 79 62.0
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 5.2e-16 89.4 61 67.2
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 8.8e-16 88.6 48 87.5
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 2.4e-13 80.5 43 79.1
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 2.9e-11 73.6 84 47.6
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 3.6e-09 66.6 233 26.2
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 1.0e-08 65.1 40 65.0


User provided reference genes

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