Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1863.6 930 100.0
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1838.2 930 98.5
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1656.0 927 88.0
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1624.4 925 86.6
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1561.6 929 82.2
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1538.1 914 82.5
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1538.1 911 82.2
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1538.1 911 82.2
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1524.6 931 80.2
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1522.3 926 80.5
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1518.1 931 79.3
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1406.3 933 74.4
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1387.9 933 73.8
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1264.2 924 67.1
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1250.3 929 66.1
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1247.6 928 67.0
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 0.0e+00 1201.4 752 79.5
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1182.9 931 63.5
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1175.2 911 63.2
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1151.0 931 61.7
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1147.9 927 61.6
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1146.0 927 62.8
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1144.4 934 61.0
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1143.6 928 62.6
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1142.1 935 61.1
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1130.5 953 60.1
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1126.7 950 60.2
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1120.1 928 61.7
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1119.8 928 58.6
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1117.4 915 61.2
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1114.8 929 58.4
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1110.1 922 60.3
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1107.8 954 58.8
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1101.7 926 59.0
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1098.2 928 58.8
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1089.3 839 63.5
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1087.0 928 59.6
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1083.2 911 59.8
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1082.0 928 59.7
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1078.5 962 56.5
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 4.5e-311 1071.2 922 58.0
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 1.4e-301 1039.6 1016 52.9
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 9.1e-301 1036.9 909 56.1
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 5.5e-298 1027.7 773 64.6
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 9.4e-298 1026.9 906 56.8
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 8.0e-297 1023.8 920 56.0
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 1.2e-295 1020.0 922 56.0
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 4.8e-294 1014.6 925 55.5
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 8.2e-294 1013.8 897 55.6
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 1.8e-293 1012.7 909 56.0
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 2.4e-293 1012.3 919 55.6
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 3.5e-292 1008.4 925 54.8
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 5.0e-291 1004.6 924 54.8
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 5.0e-291 1004.6 960 53.8
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 5.5e-290 1001.1 934 54.8
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 6.8e-288 994.2 905 55.4
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 4.4e-287 991.5 892 55.3
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 1.3e-286 989.9 771 63.9
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 2.7e-284 982.2 924 54.1
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 4.5e-284 981.5 932 53.9
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 1.7e-283 979.5 919 54.1
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 5.0e-283 978.0 919 54.1
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 8.6e-283 977.2 945 53.0
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 7.2e-282 974.2 930 53.4
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 7.2e-282 974.2 913 54.3
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 2.8e-281 972.2 920 53.3
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 5.2e-280 968.0 869 55.8
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 6.8e-280 967.6 871 55.5
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 2.6e-279 965.7 926 51.5
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 7.5e-279 964.1 925 53.3
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 3.7e-278 961.8 926 53.3
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 4.9e-278 961.4 953 51.4
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 3.1e-277 958.7 932 53.3
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 3.6e-273 945.3 869 54.7
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 2.3e-272 942.6 886 55.4
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 9.2e-269 930.6 739 62.2
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 7.5e-263 911.0 925 50.5
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 1.1e-261 907.1 876 51.3
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 9.5e-258 894.0 927 48.7
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 1.0e-251 874.0 931 48.5
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 7.6e-247 857.8 932 47.7
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 1.9e-245 853.2 740 58.2
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 2.7e-244 849.4 907 48.7
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 6.9e-240 834.7 919 48.7
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 1.1e-234 817.4 930 47.0
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 5.8e-231 805.1 977 46.6
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 5.6e-226 788.5 699 57.4
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 1.3e-217 760.8 738 53.0
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 1.6e-212 743.8 901 43.7
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 9.7e-210 734.6 547 66.0
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.4e-203 714.1 585 61.2
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.8e-200 703.7 603 57.7
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 2.1e-196 690.3 922 40.5
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 2.2e-185 653.7 921 40.8
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 3.6e-180 636.3 531 59.5
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 2.3e-171 607.1 647 48.2
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 6.6e-158 562.4 594 48.3
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 2.5e-125 454.1 349 63.3
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 9.0e-123 445.7 367 59.7
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.4e-115 421.0 314 65.6
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 3.4e-106 390.6 381 51.2
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 4.5e-90 337.0 208 76.0
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 2.4e-83 314.7 192 79.7
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 8.5e-81 306.2 936 27.8
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 1.3e-76 292.4 219 63.5
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.8e-75 288.5 219 63.9
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 2.3e-70 271.6 226 55.8
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 4.1e-67 260.8 306 45.1
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 2.5e-64 251.5 220 53.6
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.4e-54 219.2 178 59.6
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 7.5e-53 213.4 881 22.9
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.4e-51 209.1 179 56.4
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.7e-50 204.9 179 55.9
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.8e-49 201.1 179 54.7
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 2.5e-40 171.8 206 40.8
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 1.5e-37 162.5 131 62.6
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.3e-36 159.5 178 45.5
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 1.3e-36 159.5 125 61.6
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 9.2e-35 153.3 130 54.6
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.3e-33 148.7 134 54.5
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 3.6e-31 141.4 154 44.8
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.4e-30 139.4 996 21.8
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 2.2e-28 132.1 114 47.4
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 1.1e-27 129.8 492 21.7
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 1.9e-27 129.0 100 55.0
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 1.5e-24 119.4 302 31.1
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 7.3e-24 117.1 270 28.9
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 9.2e-19 100.1 81 55.6
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 2.7e-18 98.6 81 53.1
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 9.6e-16 90.1 95 45.3
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 3.1e-14 85.1 912 20.3
Glyma.09G140050 Glycine max HOM05D005069 ORTHO05D006024 2.9e-12 78.6 44 93.2
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 6.4e-12 77.4 58 56.9
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 8.4e-12 77.0 227 25.6
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.9e-11 75.9 224 26.3
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.9e-11 75.9 58 55.2
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.7e-10 72.0 98 40.8
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 7.8e-10 70.5 311 22.2
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.7e-09 69.3 272 23.5
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.3e-08 64.7 57 47.4
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 9.0e-06 57.0 83 38.6


User provided reference genes

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