Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 1.8e-111 406.0 214 100.0
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 2.2e-53 213.0 181 66.9
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 4.7e-43 178.7 176 52.8
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 8.0e-43 177.9 186 53.2
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 2.6e-41 172.9 186 54.3
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 1.7e-40 170.2 188 51.6
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 3.5e-38 162.5 182 54.4
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 5.9e-38 161.8 189 52.4
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 1.3e-37 160.6 188 48.9
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 1.3e-37 160.6 184 51.6
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 3.9e-37 159.1 178 47.2
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 5.0e-37 158.7 170 49.4
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 4.3e-36 155.6 190 47.9
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 5.6e-36 155.2 182 50.0
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 8.0e-35 151.4 185 44.9
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.4e-34 150.6 131 56.5
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 4.0e-34 149.1 202 45.0
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.2e-33 147.5 186 46.2
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 1.7e-32 143.7 141 51.8
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 2.2e-32 143.3 138 52.2
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 2.9e-32 142.9 143 52.4
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 6.4e-32 141.7 185 43.8
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 3.2e-31 139.4 142 49.3
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 4.1e-31 139.0 196 41.8
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 5.4e-31 138.7 186 43.5
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.2e-30 137.5 142 47.9
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 1.6e-30 137.1 191 43.5
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 2.0e-30 136.7 184 38.0
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.8e-30 134.8 142 48.6
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 1.7e-29 133.7 169 46.7
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 5.0e-29 132.1 188 44.1
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 6.6e-29 131.7 177 41.8
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 8.6e-29 131.3 142 47.2
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 8.6e-29 131.3 158 46.2
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.5e-28 130.6 142 46.5
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.9e-28 130.2 177 41.2
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 2.5e-28 129.8 176 41.5
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 9.5e-28 127.9 169 45.6
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 2.1e-27 126.7 155 43.9
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 2.1e-27 126.7 156 45.5
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 2.1e-27 126.7 151 47.0
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 4.7e-27 125.6 156 45.5
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 6.2e-27 125.2 177 39.0
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 6.2e-27 125.2 154 42.2
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.4e-26 124.0 146 46.6
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 1.8e-26 123.6 200 38.5
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 2.3e-26 123.2 155 41.9
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 4.0e-26 122.5 162 46.3
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 4.0e-26 122.5 146 46.6
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 8.9e-26 121.3 178 37.6
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 2.6e-25 119.8 146 42.5
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 1.4e-23 114.0 133 45.9
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 4.1e-23 112.5 185 41.1
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 7.1e-23 111.7 161 37.3
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 7.1e-23 111.7 137 43.8
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.6e-22 110.5 143 47.6
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.7e-22 109.8 139 45.3
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 3.5e-22 109.4 142 43.7
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 6.0e-22 108.6 196 38.8
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 6.0e-22 108.6 135 47.4
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 7.8e-22 108.2 133 46.6
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.0e-21 107.8 144 45.1
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.3e-21 107.5 144 44.4
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.0e-21 106.3 135 43.7
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 3.0e-21 106.3 140 47.1
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 3.9e-21 105.9 142 43.7
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 8.6e-21 104.8 142 43.0
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.1e-20 104.4 174 39.7
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 1.9e-20 103.6 133 46.6
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 1.9e-20 103.6 142 43.0
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 1.9e-20 103.6 132 47.0
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 1.9e-20 103.6 142 43.0
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.9e-20 103.6 155 38.7
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 2.5e-20 103.2 142 42.3
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 3.3e-20 102.8 146 42.5
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 3.3e-20 102.8 133 45.9
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 5.6e-20 102.1 133 45.1
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 7.3e-20 101.7 92 54.3
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 1.2e-19 100.9 133 45.1
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 8.1e-19 98.2 105 49.5
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 1.1e-18 97.8 127 40.9
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.4e-18 97.4 163 36.2
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 1.4e-18 97.4 106 44.3
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 1.8e-18 97.1 137 36.5
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.3e-18 96.7 128 39.8
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.3e-18 96.7 87 55.2
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 3.1e-18 96.3 139 39.6
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 3.1e-18 96.3 106 43.4
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 8.9e-18 94.7 155 38.7
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 8.9e-18 94.7 126 40.5
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.5e-17 94.0 91 57.1
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.0e-17 93.6 156 34.0
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 2.0e-17 93.6 170 32.9
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 3.4e-17 92.8 91 56.0
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 5.8e-17 92.0 155 34.2
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 5.8e-17 92.0 155 34.2
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 5.8e-17 92.0 131 38.9
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 9.9e-17 91.3 126 38.9
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 9.9e-17 91.3 126 38.9
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 2.9e-16 89.7 132 43.2
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 1.4e-15 87.4 140 41.4
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 2.4e-15 86.7 93 46.2
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 3.2e-15 86.3 89 52.8
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 1.2e-14 84.3 79 48.1
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 1.7e-13 80.5 115 39.1
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 2.3e-13 80.1 178 35.4
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 5.1e-13 79.0 90 44.4
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 9.6e-12 74.7 146 34.2
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 1.2e-11 74.3 147 33.3
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.8e-10 70.5 153 32.0
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 1.8e-10 70.5 151 34.4
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 5.2e-10 68.9 110 41.8
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 8.9e-10 68.2 131 35.1
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 1.2e-09 67.8 130 34.6
Nn8g39654 Nelumbo nucifera HOM05D005423 ORTHO05D006223 1.5e-09 67.4 86 41.9
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.0e-09 67.0 109 41.3
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.0e-09 67.0 109 41.3
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 4.4e-09 65.9 130 33.1
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 7.6e-09 65.1 96 36.5
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 9.9e-09 64.7 143 31.5
FAN18G0575 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.2e-08 63.5 64 56.2
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 2.9e-08 63.2 65 50.8
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 4.9e-08 62.4 65 49.2
arahy.Tifrunner.gnm1.ann1.L56H08 Arachis hypogaea HOM05D002727 ORTHO05D002856 6.4e-08 62.0 95 38.9
BcaB03g13072 Brassica carinata HOM05D005305 ORTHO05D006394 6.4e-08 62.0 120 40.8
FvH4_6g29350 Fragaria vesca HOM05D005423 ORTHO05D006223 6.4e-08 62.0 67 52.2
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 8.4e-08 61.6 95 38.9
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 8.4e-08 61.6 117 41.9
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 1.1e-07 61.2 68 42.6
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 1.1e-07 61.2 118 41.5
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 2.4e-07 60.1 122 39.3
Sc12g0002500 Simmondsia chinensis HOM05D007205 ORTHO05D009175 3.2e-07 59.7 103 35.0
Cpa.g.sc34.48 Carica papaya HOM05D007205 ORTHO05D009175 4.2e-07 59.3 139 36.0
Rhsim09G0083400 Rhododendron simsii HOM05D006072 ORTHO05D007363 4.2e-07 59.3 151 32.5
Aqoxy2G00583 Aquilegia oxysepala HOM05D007205 ORTHO05D009175 5.4e-07 58.9 100 32.0
BcaC07g38772 Brassica carinata HOM05D005305 ORTHO05D006394 5.4e-07 58.9 120 40.0
C08p17050 Brassica napus HOM05D005305 ORTHO05D006394 5.4e-07 58.9 120 40.0
BolC8t49330H Brassica oleracea HOM05D005305 ORTHO05D006394 5.4e-07 58.9 120 40.0
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 5.4e-07 58.9 99 32.3
Psat3g178240 Pisum sativum HOM05D002727 ORTHO05D002856 1.2e-06 57.8 117 35.0
Sed0009741 Sechium edule HOM05D007205 ORTHO05D009175 1.2e-06 57.8 93 37.6
Carub.0007s1174 Capsella rubella HOM05D005423 ORTHO05D006223 1.6e-06 57.4 119 36.1
HanXRQChr17g0564241 Helianthus annuus HOM05D007205 ORTHO05D009175 1.6e-06 57.4 121 35.5
Peaxi162Scf00007g00153 Petunia axillaris HOM05D007205 ORTHO05D009175 1.6e-06 57.4 70 41.4
FAN25G3864 Fragaria x ananassa HOM05D046692 ORTHO05D006223 2.1e-06 57.0 45 57.8
Glyma.09G119800 Glycine max HOM05D002727 ORTHO05D002856 2.1e-06 57.0 108 31.5
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 2.1e-06 57.0 121 33.1
BraA03t09662Z Brassica rapa HOM05D007205 ORTHO05D009175 2.7e-06 56.6 101 40.6
Phvul.006G211300 Phaseolus vulgaris HOM05D005305 ORTHO05D006394 2.7e-06 56.6 89 39.3
A03p03030 Brassica napus HOM05D007205 ORTHO05D009175 3.5e-06 56.2 101 40.6
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 3.5e-06 56.2 68 32.4
CARHR206230 Cardamine hirsuta HOM05D007205 ORTHO05D009175 3.5e-06 56.2 105 39.0
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 3.5e-06 56.2 170 22.4
Pp3c6_3400 Physcomitrium patens HOM05D005423 ORTHO05D006223 4.6e-06 55.8 109 33.0
PGSC0003DMG400040434 Solanum tuberosum HOM05D007205 ORTHO05D009175 4.6e-06 55.8 112 33.0
Aa31sc352G60 Aethionema arabicum HOM05D007205 ORTHO05D009175 6.0e-06 55.5 101 39.6
DCAR_002955 Daucus carota HOM05D005423 ORTHO05D006223 6.0e-06 55.5 83 36.1
SMO290G0002 Selaginella moellendorffii HOM05D005423 ORTHO05D006223 6.0e-06 55.5 208 28.8
BcaB01g02893 Brassica carinata HOM05D007205 ORTHO05D009175 7.8e-06 55.1 114 36.0
BcaC02g10449 Brassica carinata HOM05D007205 ORTHO05D009175 7.8e-06 55.1 94 39.4
A09p38220 Brassica napus HOM05D005423 ORTHO05D006223 7.8e-06 55.1 54 53.7
C04p28790 Brassica napus HOM05D007205 ORTHO05D009175 7.8e-06 55.1 94 39.4
Thhalv10015696m.g Eutrema salsugineum HOM05D007205 ORTHO05D009175 7.8e-06 55.1 105 37.1
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 7.8e-06 55.1 69 44.9
TPR.G4843 Trifolium pratense HOM05D002727 ORTHO05D002856 7.8e-06 55.1 129 32.6


User provided reference genes

Program Settings